Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Dennis (2018)
Title HIV-1 Transmission Clustering and Phylodynamics Highlight the Important Role of Young Men Who Have Sex with Men.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 2913
NumPts 2913
Subtype B, C, A, CRF02_AG, CRF01_AE, D, G, B + C, F, G + CRF02_AG, H, CRF20_BG, CRF24_BG

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 2913 Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
PT1000804 ISO1000804 Unknown Unknown   I37X, K64KR, K122KE, D123E, I135T, I244V  
PT1000807 ISO1000807 Unknown Unknown   A98S, K122KE, I135IT, T200A, A272S, K277R, Q278H, K281R, T286A, I293V, S322A, Q334L, K366KR, T369X, Q373QH, K385KR, K388KR, K390R, A400AT  
PT1000808 ISO1000808 Unknown Unknown   K20R, V21I, V60I, K122KE, I178IM, V179I, I195IL, G196E, Q197QE, V245K, E248D, T286A, E297K, D324DE  
PT1000809 ISO1000809 Unknown Unknown M184V K103N V35T, V60I, K64R, R83K, K122E, I135T, E138A, S162Y, I178L, Q207D, Y232YH, I244V, A272P, T286A, I293V, E297T, K311R, F346Y, M357V, T369TI, K390R, A400T  
PT100081 ISO100081 Unknown Unknown   K122E, I135T, I178M, G196E, F214L, V245E, D250E, A272P, L283I, T296S, E297K, Q334H, T338S, R356K, M357T, A376T, K390R, A400S  
PT1000810 ISO1000810 Unknown Unknown   I142V, S162C, T200A, E203D, R211K, K281R, T286TA, G333D, T377I, K390R, A400T  
PT1000811 ISO1000811 Unknown Unknown   K20R, V35I, V106VI, I135T, T165I, D177E, I178X, Q207E, R211RK, F214L, V245I, E248X, K249Q, S251SI, A272P, K277R, T286A, A288AS, I293V, S322SA, Y339F, M357T, A360AT, T386V, K390R, A400T  
PT1000815 ISO1000815 Unknown Unknown   K20R, V35I, D123E, I178L, Q207E, F214L, V245E, V292I, I293V, Q334Y, S379G, T386I, A400T  
PT1000819 ISO1000819 Unknown Unknown   D123E, S162C, D177E, I178X, T200X, Q207G, R211RK, A272P, K277R, T286A, V292I, M357T, A376S, T377L, K390R, A400T  
PT1000822 ISO1000822 Unknown Unknown  K103N V35VI, K102Q, I135V, K173N, R211G, I293V, V317A, I329L, M357T, K366R, K390R, Q394H  
PT1000825 ISO1000825 Unknown Unknown   V35I, R83K, D123E, K173E, T200X, Q207QH, R211RK, E248N, D250DE, V261VI, T286A, E297K, K311KR, M357V, A376T, T377S, T386A, A400T  
PT1000827 ISO1000827 Unknown Unknown   S162C, R211K, K275R, K277R, L283I, I293V, E297A, V317A, I329V, M357T, T386I, K390R, E399D, A400T  
PT1000829 ISO1000829 Unknown Unknown   K122E, S162C, Q197E, T200A, E204EG, Q207X, L210LF, R211RK, F214FL, E248D, A272P, K277KR, T286A, V292I, I293IV, E297EK, G333GE, Q334QL, M357T, A376AS, T377I, K390R, A400T  
PT1000830 ISO1000830 Unknown Unknown  K103KN, Y181YC A98S, L109LM, K122KE, K173KT, Q174QH, I178IM, R211K, V245VE, T286TA, V292I, E297K, K311KR, D324DE, I329L, Q334N, G335D, M357V, V365VI, K390KR, A400T  
PT1000832 ISO1000832 Unknown Unknown L210LW, K219KN Y181YC K122KE, I142V, S162C, I178L, R211K, L228LR, V245X, K277R, T286TA, I293V, D324DE, G333E, R356K, M357MI, K390R  
PT1000833 ISO1000833 Unknown Unknown   K20R, M41MV, V60X, R83RK, K104KN, D121H, K122E, I142IV, D177E, I178IM, T200A, Q207A, R211K, I293V, E297A, I326IV, I329L, T386I, K390R, A400T  
PT1000836 ISO1000836 Unknown Unknown M184MV  K20KR, K122E, A158S, E203EA, V245VI, I257L, A272P, I293V, L325LI, K390R, A400S N306ND 
PT1000843 ISO1000843 Unknown Unknown   V35VI, R83K, V90I, I135IT, S162H, I202IV, Q207K, R211S, T286A, R356K, K390R, T397I, A400T  
PT1000844 ISO1000844 Unknown Unknown M184V, T215F K103N, Y318F V35VL, K43KR, K101R, I132L, S162Y, D177E, T200TA, R211E, L228X, V245L, A272P, Q334L, G335S, T338S, F346Y, R356K, M357ML, V365I, K390R, E399D  
PT1000847 ISO1000847 Unknown Unknown   V35I, T200A, E248D, V261I, K277R, T286A, E297K, K311KR, M357V, T377S, A400T  
PT1000849 ISO1000849 Unknown Unknown   K49KR, I50V, V60VI, R83K, K122E, E169ED, P176PA, D177DN, I178IM, G196E, T200A, A272P, K281R, Q334L, G335N, A376AT, T386TA, K390R, A400T  
PT1000852 ISO1000852 Unknown Unknown   A98S, K102R, K122E, D123N, S162C, T200A, S251N, K277R, T286A, F346Y, S379G, K390R, E399D, A400T  
PT1000854 ISO1000854 Unknown Unknown   V35M, T39TS, A98S, T107S, K122P, S162C, Q197E, R211X, A272S, K281R, T286A, I293V, P313T, E328D, I329V, M357MI, K390KR, A400T  
PT1000855 ISO1000855 Unknown Unknown M184V  K20R, V35T, V60I, K122P, K166R, Q174E, D177E, F214L, I244V, E248D, D250E, A272P, T286A, A288S, I293V, T296S, E297K, G335D, R356K, M357T, V365I, K366R, E399D  
PT1000856 ISO1000856 Unknown Unknown   I37X, T39E, S48T, D121H, K122E, A158S, K173A, Q174QK, D177E, I178L, G196R, T200A, I202V, Q207E, R211RK, V245Q  
PT1000860 ISO1000860 Unknown Unknown   V21VI, S48T, E53D, S162A, P243T, V245K, A272S, K281R, I293V, I326V, Q343QR, M357T, A360V, T377V, A400T  
PT1000863 ISO1000863 Unknown Unknown   V35I, V60I, D121Y, K122E, I135T, I142V, T200X, Q207N, R211K, I274IV, T286A, I293V, E297EA, L325I, I326IV, I341IF, T369TA, E370EA, K374KR, T377Q, K390R, A400AT  
PT1000865 ISO1000865 Unknown Unknown M41L, L210W, T215D  T39A, I50V, V60I, K64R, V118I, D123E, I135T, I142V, T165I, D177E, T200A, Q207E, R211K, F214L, A272P, K277KR, I293V, E297A, S322T, I326IV, M357T, V381I, A400I  
PT1000867 ISO1000867 Unknown Unknown  K103N R83K, K166R, G196E, R211K, K277R, P294Q, S322T, D324DE, Q334QL, A376T, T386A, K390R, A400S  
PT1000871 ISO1000871 Unknown Unknown M184V  I37X, K102R, K122E, D123N, I135T, D177E, I178M, T200A, F214L  
PT1000875 ISO1000875 Unknown Unknown   K122E, S162C, R172K, T200A, Q207E, R211Q, E248D, T286A, V292I, V317M, Q334E, R356K, M357T, K390R, A400T  
PT1000876 ISO1000876 Unknown Unknown M41L, M184V, T215Y, N348I K103N, V108I V8VI, R83K, T165L, T200A, Q207E, L210F, L228R, V245M, D250E, A272P, K277R, E297A, S322A, M357T, G359GS, K366R, T369A, A376T, K390R, A400T  
PT1000877 ISO1000877 Unknown Unknown M184V  I37X, K43KR, K49R, I50V, K102KR, K104KR, K122E, G196E, I202V, R211RK, I244V  
PT1000883 ISO1000883 Unknown Unknown M184V  I37X, K43KR, S68G, R83K, K102KQ, K122E, D123DN, I135T, R211S, F214FL  
PT1000884 ISO1000884 Unknown Unknown   K122E, I135T, T139TA, G196E, T200A, I202V, I244V, A272P, E291D, E297K, Q334E, M357T, V365I, K390R, A400T  
PT1000885 ISO1000885 Unknown Unknown  V106VA, G190A S48T, E53D, K101X, S162X, T165TI, P243A, V245K, A272P, K281R, I293V, E297EK, I326V, M357T, A360V, A400T W383WL 
PT1000887 ISO1000887 Unknown Unknown   V35M, T39A, R83K, V90I, A98S, A158S, S162C, E169D, T200A, R211K, E248D, S251C, A272S, K277R, A288S, E297K, A304E, I326V, Q334L, T386I, K390R, A400T  
PT1000888 ISO1000888 Unknown Unknown D67N, K70R, T215TI L100I, K103N, P225H I37X, T69S, S134SG, I135T, S162C, F214L, K219X, V245K P157A 
PT1000889 ISO1000889 Unknown Unknown M184MV K103N, V106VA, Y181YC K122E, G196E, R211Q, K277R, A288AS, I293V, P294T, E297R, Q334QL, A376T, A400T  
PT1000891 ISO1000891 Unknown Unknown M184I K103N I37X, R83K, V90I, K122E, S162Y, T200L, R211K  
PT1000893 ISO1000893 Unknown Unknown M41L, D67N, L74V, M184V, T215Y K101E, V108I, Y181C, G190A I37X, T69E, S134G, S162C, T200X, E203D  
PT1000897 ISO1000897 Unknown Unknown   V35I, T69TN, R83K, K122KE, D177E, G196E, T200TI, I202IV, R211X, E248D, D250E, S251SC, A272P, K277R, T286A, E297K, G333E, Q334H, P345Q, F346Y, M357MI, K385KR, K390R, A400T  
PT1000898 ISO1000898 Unknown Unknown   V35I, I135M, T200I, R211K, V245K, A272P, T286A, E297K, I326V  
PT1000899 ISO1000899 Unknown Unknown   P4S, I135T, K166KR, F214L, A272P, K277R, T286A, I329V, R358K, A376T  
PT100090 ISO100090 Unknown Unknown   I37X, T39A, K102KQ, K122E, I178M, T200A, Q207E, R211RK  
PT1000902 ISO1000902 Unknown Unknown L74V, M184V  Y115X, K277R, L283I, I293V, A376T, K390R, A400T  
PT1000905 ISO1000905 Unknown Unknown   K102Q, K122E, D123E, K166R, E169ED, I202V, R211K, V245M, A272P, K277R, L283I, I293V, E300Q, I329V, Q334E, P345Q, F346Y, R356K, K390R  
PT1000908 ISO1000908 Unknown Unknown  K103N K82KR, I178L, R211K, I293V, I326V, Q334L, A376T, T377M, S379C, E399D  
PT1000909 ISO1000909 Unknown Unknown   E53D, R83K, V90I, D123E, G196E, T200A, A272P, K275KR, V276VI, Q278H, I293V, Q334S, M357A, A376T, K390R, A400T Q151QR 
PT1000910 ISO1000910 Unknown Unknown   V35X, R83K, D123E, D177E, I178L, T200TA, E204D, R211K, L283I, A288S, I293IV, S322T, D324DE, Q334E, G359GS, T377X, K390R  
PT1000911 ISO1000911 Unknown Unknown   V35I, S68N, D123E, I135T, S163T, Q174QR, T200I, R211K, F214L, I244V, E248D, A272P, K275Q, K277R, Q278H, K281KR, T286A, I293IV, P294A, E297K, F346Y, R356K, A360AT, K390R, A400T  
PT1000912 ISO1000912 Unknown Unknown M184V  I37X, V60I, R83K, R211K, V245E  
PT1000914 ISO1000914 Unknown Unknown   D123E, I178M, T200A, R211RK, A272P, K277R, K281R, T286A, E297R, S322L, T377I, K390KR, A400T  
PT1000915 ISO1000915 Unknown Unknown K65KR, M184V K103N, Y181C V35M, V60VI, K64KR, S68SG, K70X, V90I, K101KR, D121Y, K122E, I135T, D177E, T200TA, F214L, I244IV, A272P, K281R, E297R, F346Y, M357T, A376S, T386I, K390R, A400T  
PT1000916 ISO1000916 Unknown Unknown M184V A98AG, K103N K20KR, K49R, V60I, K64R, D121Y, K122E, D123E, I135T, K173Q, Q174QK, T200TA, E204ED, R211K, A272P, K275R, K277KR, Q278X, I293V, K311KR, I329L, Q334X, G335D, T338TS, M357MT, G359GS, T377X, A400AT  
PT1000917 ISO1000917 Unknown Unknown   K11KR, K32KE, V35I, R83K, K122E, I135T, K166KR, I178M, I202V, R211K, I244V, A272P, K275Q, K277R, P294T, E297K, F346Y, R356RK, A360T, K390R, A400T  
PT1000918 ISO1000918 Unknown Unknown D67N, T69D, K70KR, M184V  I37F, V179VI, T200E, E203EK, R211K, V245K  
PT1000922 ISO1000922 Unknown Unknown   V35I, I135T, K166R, R211K, V245Q, D250E, T286A, A288S, M357T, R358K, T377I, K390R, A400S  
PT1000925 ISO1000925 Unknown Unknown M184V K103N I37X, V60I, R83K, I135V, T200A, R211K  
PT1000928 ISO1000928 Unknown Unknown K70R, K219KQ  I37X, V60VI, T69S, S134SG, I142IV, S162X, E203D, R211K, F214FL, K223KR  
PT1000932 ISO1000932 Unknown Unknown   S68SG, A98AS, S162X, K166KR, Q174H, I178IM, Q197E, T200TA, R211K, A272X, L283LI, T286TA, I293V, E297X, L301M, Q334E, P345PQ, M357T, A360AT, S379G, V381I, K390R, A400T  
PT1000933 ISO1000933 Unknown Unknown   E40R, K122E, D123S, Q174X, D177E, G196E, T200E  
PT1000934 ISO1000934 Unknown Unknown D67N, K70R, M184V, T215V, K219E  E6D, V35X, V60VI, T69N, K122E, I202V, R211K, A272P, K277R, D324DE, R356K, A376T, T386I, A400T  
PT1000938 ISO1000938 Unknown Unknown  V179D A98S, K103R, T107TS, D123N, S162C, Q207D, R211K, F214FL, A272P, K277R, A288T, P294Q, R307RK, K311R, I329V, G359S, T377I, A400T  
PT1000942 ISO1000942 Unknown Unknown  V179D V35I, T39TA, S68G, K122E, I135L, I178IM, V245E, L283LI, T286TA, V292I, P313T, G359S, I375IV, T377TI, S379SG, T386TI, K390R, A400T  
PT1000948 ISO1000948 Unknown Unknown D67N, K70R, M184V, K219Q  K49R, I50V, V60VI, D123E, I135T, F214L, R284K, E297K, I329L, A360T, V365VI, K390R, K395R, E399D, A400T  
PT1000950 ISO1000950 Unknown Unknown   K20R, V35I, D86E, Q207E, R211K, E291D, P294Q, T369A, E370D, I375V  
PT1000951 ISO1000951 Unknown Unknown   V35T, V60I, R83K, K122KE, D123E, I135T, S162X, I195IL, T200A, R211RG, I244V, A272P, K277R, T286A, E297K, F346Y, K366R, K390R, A400T  
PT1000952 ISO1000952 Unknown Unknown M184V  K122KE, E138A, I142V, K166T, T200A, R211K, K277R, R284RK, E297EA, A327AV, K366R, T377R, K390R, Q394H  
PT1000954 ISO1000954 Unknown Unknown M184V  T7TA, K32N, K49R, R83RK, D123E, I142IT, E169D, D177E, T200A, Q207E, R211RK, K277KR, I293V, E297A, S322T, I326V, G359GS, A360T, A400T  
PT1000957 ISO1000957 Unknown Unknown M41L, D67N, M184V, L210W, T215Y, K219N  E44D, V118I, K122E, D123E, I135T, S162C, G196E, H208HY, R211RK  
PT1000958 ISO1000958 Unknown Unknown M184V  V35T, E36A, K122E, D123N, D177E, I178L, V179I, T200I, Q207QE, R211RG, A272AP, T286A, I293V, E297A, I329V, A376T, E399D, A400X  
PT1000959 ISO1000959 Unknown Unknown K65KR, M184MV  I5IV, V106I, K173X, G196GE, Q207E, H208Y, R211K, F214FL, V245X, D250DE, A272P, K277R, T286A, I293IV, E297K, G333E, Q334D, G335N  
PT1000960 ISO1000960 Unknown Unknown   K20R, D123E, T165I, Q174X, T200TA, R211G, F214L, V245VM, R284K, I293V, P294Q, K311KR, Q334L, M357T, A376T, K390R, A400T  
PT1000961 ISO1000961 Unknown Unknown   S68G, D121H, K122E, I135T, E138A, S162C, R172K, P176Q, G196E, A272P, K277R, I293V, E297I, V317A, M357T, K390R  
PT1000962 ISO1000962 Unknown Unknown   V35T, T39E, S48T, K122E, D123N, I142IV, K173A, T200A, Q207K, R211K, V245K, E248D, E291D, V292I, I293V, Q334H, G335D, R356K, G359T, K366R, K390R, A400T  
PT1000963 ISO1000963 Unknown Unknown   S48T, K49KR, E53D, S162A, P243A, V245K, D250DE, S251SI, A272P, K281R, V317VA, D324DE, I326IV, M357T, A360AT, A376V, T386TP, E399K, A400T  
PT1000964 ISO1000964 Unknown Unknown   V35VI, K49KR, R83K, R211K, V245VM, E248ED, D250DE, A272P, K281R, T286A, E297K, Q334D  
PT1000965 ISO1000965 Unknown Unknown M41ML, M184MV, N348I K103N, P225H K22KN, D123X, Q174L, D177DE, I178IV, G196E, T200TA, Q207E, R211K, F214L, V245E, I293V, G333E, Q334H, M357T, V365VI, S379G, K385R, K390R, E399G, A400T  
PT1000966 ISO1000966 Unknown Unknown D67N, K70R, M184V, K219H  V35I, K43E, A98S, K122E, I135V, Q174X, T200A, E203K, Q207E, R211K, A272P, I274V, K275R, Q278H, I293V, V314I, D324E, I329L, G335D, A355AT, R356K, R358K, G359S, A360V, A376T, T386I, A400T W239G 
PT100097 ISO100097 Unknown Unknown   R83K, D123E, S163T, T165I, R211K, A272P, K277R, T286A, E297K, Q334L, R358RK, K366R, A371V, I375V, A376T, K395R, E399D, A400T  
PT1000970 ISO1000970 Unknown Unknown   V35T, K122P, I159V, Q174E, D177E, I244V, V245X, E248D, D250E, A272P, K275R, T286A, A288S, I293V, T296S, E297K, G335D  
PT1000972 ISO1000972 Unknown Unknown   R83K, R211K, I293V, E297Q  
PT1000973 ISO1000973 Unknown Unknown   V35I, K122KE, D123DE, I135T, F171FY, T200A, R211K, V245Q, I293V, Q334L, K385R, K390R  
PT1000974 ISO1000974 Unknown Unknown  K103N V35X, K122E, I135L, D177N, T200I, I244IV, V245E, A272P, L283I, T286A, V292VI, I293V, P294PS, E297X, D320DE, R356K, G359S, A371AV, K385R, K390R  
PT1000975 ISO1000975 Unknown Unknown   I37X, T165TI, Q174QK, R211RK, F214L, V245X  
PT1000977 ISO1000977 Unknown Unknown   K20R, D123E, D177E, R211K, K277R, I293V, E297EA, Q334L, A360T, T369V, Q373H, A376S, K390R, A400V  
PT1000978 ISO1000978 Unknown Unknown   V60VI, Q174K, G196E, I202IV, Q207X, R211K, A272P, K281KR, T286A, K311KR, V317A, Q334L, G335GS, M357T, K366R, I375X, K390R, A400T  
PT1000979 ISO1000979 Unknown Unknown   I37X, S134SG, I142IT, S162C, T200A, R211K, L246LP D110DN, D113DN 
PT100098 ISO100098 Unknown Unknown  K103N, V179VE E6D, T200TI, R211RK, T286A, A288S, E297EA, K311R, A376T, A400T  
PT1000981 ISO1000981 Unknown Unknown M41ML, K70KR, M184V  I37X, K102KR, E203K, Q207E, R211K, V245E  
PT1000984 ISO1000984 Unknown Unknown M184V K103N, P225H I37F, I135T, I142V, S162C, R211K  
PT1000986 ISO1000986 Unknown Unknown M184V  K13R, V35I, K122E, A158S, S162C, E169D, R211K, V245E, A272P, K277R, Q278H, E297K, D324E, I329L, K390R, A400T P52S, L92LF 
PT1000989 ISO1000989 Unknown Unknown   V35M, R83K, I178M, Q207X, K281R, T286A, E291ED, E297A, Q334E, Y339F, M357T, K390R, A400T  
PT1000990 ISO1000990 Unknown Unknown   V35I, V106VI, V118I, K122E, D123A, K173E, I202V, E204X, R211G, F214L, A272P, L283LI, I293IV, S322T, I329L  
PT1000991 ISO1000991 Unknown Unknown M184V K103N I37X, K122E, I135T, T139TR, S162C, T200I, V241VI D113DN 
PT1000993 ISO1000993 Unknown Unknown A62V, V75I, F77L, Y115F, F116Y, Q151M, M184I A98G, K103N, Y181C E28A, K32Q, V118I, D123E, I135L, T139TA, T165TI, D177E, G196E, T200A, F214L, K249Q, D250E, K275Q, K277R, T286A, I293V, P294Q, E297K, R356K, T369A, A376T, K388KR, K390R, E399D, A400T  
PT1000995 ISO1000995 Unknown Unknown   V35T, E36EA, T39A, E40D, D121H, K122E, I142IV, K166R, P176PS, D177E, I178IM, G196E, T200A, Q207X, E248D, A272P, K277R, T286A, P294A, I326V  
PT1000996 ISO1000996 Unknown Unknown   V90VI, K101X, K103KR, K104KR, D123E, S162A, Q174E, D177E, I178V, T200TA, Q207N, H208HY, R211K, L228LR, I257L, K277R, I293V, P313T, Q334E, T369TI, E370EG, K390R, A400T  
PT1000999 ISO1000999 Unknown Unknown   P4Q, K49R, K122KE, I135T, E169D, G196E, I202V, E204Q, R211K, F214FL, A272P, K281R, P294T, L295F, E297K, Q334E, M357T, K390R, A400T  

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