Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Chen (2016)
Title Fast Dissemination of New HIV-1 CRF02/A1 Recombinants in Pakistan.
Citation PLoS ONE
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 36
NumPts 36
Subtype A, CRF02_AG, C

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
PK001 PK001 None    E11D, K14R, R20K, S24N, L101I, T112I, T124A, T125A, I135V, D167E, V201I, T206S, K219N, N222K, L234I, S255N, S283G, R284G, D288N  
PK002 PK002 None    K14R, R20K, V31I, S39N, Y83F, T112I, I113V, T124A, T125A, V126F, G134S, I135V, D167E, K173R, V201I, T206S, K215N, N222K, L234I, D279G, S283G, R284G  
PK003 PK003 None    K14R, L45Q, M50I, L101I, T112V, T124A, T125A, G134N, K136T, D167E, V201I, T206S, T218I, L234I, S283G, D286N  
PK004 PK004 None    E11D, K14R, R20K, V31I, V32I, I72V, I84L, T112I, I113V, T124A, V126F, I135V, D167E, V201I, A205S, T206S, I208L, N222K, L234I, S283G, R284G  
PK005 PK005 None    L234I, D256E, S283G, D286N  
PK006 PK006 None    K14R, S39C, L45Q, L101I, T112V, T124A, T125A, G134N, K136T, D167E, V201I, T206S, T218L, L234I, S283G, D286N  
PK007 PK007 None    R20K, V31I, L68M, I72V, L74I, I84L, T112V, I113V, S119T, T124A, T125A, V126F, G134S, I135V, V201I, I208L, T218I, N222K, L234I, R284G  
PK008 PK008 None    K14R, V31I, L45Q, S57G, I72V, L101I, T112V, T124A, T125A, G134S, I135V, D167E, V201I, T206S, K211R, N222K, L234I, M275V, S283G  
PK009 PK009 None    M50T, L74M, L101I, T112V, T124N, T125A, V126T, G134D, K136Q, G163S, V201I, L234I, R269K, D278A, S283G, R284G, D286N  
PK010 PK010 None    L234I, R269K, D278A, S283G, R284G  
PK011 PK011 None  E138K, G140R G163R M22I, V31I, D41N, L45Q, G52R, G59R, L74I, L101I, T112V, T124A, T125A, G134N, K136T, M154I, R166K, D167E, V201I, T206S, T218I, R224Q, L234I, S283G, D286N G47K, G70K, E96K, G149R 
PK012 PK012 None    K14R, R20K, A21T, V31I, I72V, L74I, I84L, T112V, I113V, T124A, T125A, V126F, G134S, I135V, D167E, V201I, I203M, T206S, K211R, N222K, Y227F, L234I, D253Y, M275V, S283G, R284G  
PK013 PK013 None    K14R, R20K, V31I, S39N, I72V, A76G, I84L, T112V, I113V, T124A, T125A, V126F, G134S, I135V, D167E, V201I, I203M, K211R, N222K, L234I, S283G, R284G  
PK014 PK014 None   T97A A21T, I72V, I84L, T112V, I113V, T124A, T125A, V126F, G134S, I135V, V165I, D167E, V201I, T206S, N222K, L234I, M275V, S283G, R284G, E287A  
PK015 PK015 None    K14R, R20K, V31I, L101I, T112V, T124A, T125A, K136T, G163E, D167E, V201I, T206S, L234I, S283G, D286N  
PK016 PK016 None    K14R, R20K, V32I, I60M, I72V, I84L, T112V, I113V, T124A, T125A, V126F, I135V, D167E, V201I, A205S, T206S, D207E, N222K, L234I, S283G, R284G, D286N  
PK017 PK017 None    K14R, R20K, V32I, I60M, I72V, G82S, I84L, T112V, I113V, T124A, T125A, V126F, I135V, D167E, V201I, A205S, T206S, D207E, N222K, L234I, S283G, R284G, D286N  
PK018 PK018 None    E11D, R20K, V32I, I72V, I84L, T112V, I113V, T124A, T125A, V126F, I135V, D167E, V201I, T206S, K215N, N222K, L234I, S283G, R284G, D286N  
PK019 PK019 None    K14R, V31I, L45Q, S57G, E96D, L101I, T112V, T124A, T125A, G134N, K136T, D167E, V201I, I204L, T206S, L234I, S283G, D286N  
PK020 PK020 None    E11D, K14R, V31I, S39N, L45Q, I72V, L101I, T112I, T124A, T125A, K136H, D167E, N222K, L234I, S283G, R284G, D288N  
PK021 PK021 None    K14R, R20K, V32I, M50R, I72V, I84L, G106A, T112V, I113V, T124A, T125A, V126F, G134S, I135V, D167E, G193E, V201I, I203M, T206S, K211R, N222K, L234I, D279G, S283G  
PK023 PK023 None    K14R, V31I, L45Q, L101I, T112V, T124A, T125A, G134N, K136T, D167E, V201I, T206S, T218I, L234I, S283G, D286N Q137P 
PK024 PK024 None    K14R, V31I, L45Q, S57G, L101I, T112V, T124A, T125A, G134N, K136T, D167E, V201I, I204L, T206S, L234I, S283G, R284G, D286N  
PK025 PK025 None    K14R, V31I, S39C, L45Q, L101I, T112V, T124A, T125A, G134N, K136T, D167E, V201I, I203M, T206S, T218I, L234I, S283G  
PK026 PK026 None    K14R, R20K, V32I, I60M, I72V, L74M, I84L, T112V, I113V, T124A, T125A, V126F, G134S, I135V, D167E, V201I, I203M, T206S, K211R, N222K, Y227F, L234I, D253Y, M275V, S283G, R284G  
PK027 PK027 None    E11D, K14R, R20K, V32I, I60M, I72V, L74I, T112V, I113V, T124A, T125A, V126F, G134S, I135V, D167E, V201I, I203M, T206S, K211R, N222K, Y227F, L234I, D253H, D256E, M275V, S283G, R284G  
PK030 PK030 None    K14R, V31I, I72V, I84L, T112V, I113V, S119T, T124A, T125A, V126F, I135V, V201I, I203M, I208L, T218I, N222K, L234I, R284G  
PK031 PK031 None    V31I, M50I, I72V, I84L, T112V, I113V, S119T, T124A, T125A, V126F, I135V, V201I, I203M, I208L, T218I, N222K, L234I, R284G  
PK032 PK032 None    K14R, V31I, L45Q, S57G, L101I, T112V, T124A, T125A, G134N, K136T, D167E, K188R, V201I, T206S, T218I, L234I, S283G, D286N  
PK033 PK033 None    E11D, K14R, V31I, V32I, L45Q, T112V, I113V, T124A, T125A, V126F, G134S, I135V, V201I, T206S, K211R, L234I, S255R, S283G, D286N  
PK034 PK034 None    E11D, K14R, R20K, V31I, T112V, I113V, T124A, T125A, V126F, G134S, I135V, D167E, V201I, I204L, T206S, K211R, N222K, Y227F, L234I, D253H, S255N, R269K, M275V, S283G, R284G  
PK035 PK035 None    K14R, V31I, L45Q, S57G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, D167E, V201I, T206S, L234I, S283G, D286N  
PK036 PK036 None    K14R, R20K, V31I, D41N, L74M, I84L, T112V, I113V, T124A, T125A, V126F, D167E, V201I, I204L, T206S, K211R, T218S, N222K, Y227F, L234I, S255G, M275V, S283G, R284G I135A 
PK038 PK038 None    E11D, K14R, V31I, L45Q, S57G, L101I, K111R, T112V, T124A, T125A, G134N, I135V, K136T, D167E, V201I, T206S, T218I, L234I, S283G, D286N  
PK039 PK039 None    K14R, L45Q, S57G, E96D, L101I, K111R, T112V, T124A, T125A, G134N, K136T, D167E, V201I, I204L, T206S, L234I, S283G, D286N  
PK040 PK040 None    K14R, V31I, A49T, I72V, I84L, T112V, I113V, S119T, T124A, T125A, V126F, G134S, V201I, I208L, N222K, L234I, R284G  

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