Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Dennis (2017)
Title Rising prevalence of non-B HIV-1 subtypes in North Carolina and evidence for local onward transmission.
Citation Virus Evol
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 425
NumPts 425
Subtype B, C, CRF02_AG, A, D, CRF01_AE, G, CRF06_cpx, CRF45_cpx, H, CRF18_cpx, J, G + J, G + CRF02_AG, CRF09_cpx, CRF12_BF, CRF25_cpx

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 425 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
NC_LC_1006 NC_LC_1006 Unknown    I13V, M36I, R41K, L63P, I72V  
NC_LC_1021 NC_LC_1021 Unknown    T12S, I15V, L19I, M36I, N37K, R41N, Q61D, L63P, H69K, V82I, I93L  
NC_LC_1055 NC_LC_1055 Unknown    T12A, I13V, K14R, G16E, K20I, E35D, M36I, R41K, H69K, K70R, L89M  
NC_LC_1076 NC_LC_1076 Unknown    I13V, K20I, M36I, R41K, C67S, H69K, K70R, V82I, L89M  
NC_LC_1084 NC_LC_1084 Unknown    I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, L89M  
NC_LC_1093 NC_LC_1093 Unknown    L19V, M36L, N37S, R41K, L63P, H69K, L89M, I93L  
NC_LC_1097 NC_LC_1097 Unknown    T12S, I15IV, G16A, L19I, M36I, N37K, P39PS, R41N, H69K, L89M, I93L  
NC_LC_1102 NC_LC_1102 Unknown    I13V, K14R, G17E, K20I, M36I, N37K, R41K, H69K, L89M  
NC_LC_1122 NC_LC_1122 Unknown    T12TP, K14KR, I15IV, G16GE, E35D, M36I, R41K, L63LP, H69K, V77VI, L89M, I93L  
NC_LC_1128 NC_LC_1128 Unknown    T12S, I15V, G16A, L19I, E35D, M36I, R41K, D60E, Q61E, L63P, H69K, I93L  
NC_LC_1131 NC_LC_1131 Unknown    T12TA, I13V, K14KR, K20I, M36I, P39PS, R41K, I64L, H69K, L89M  
NC_LC_1132 NC_LC_1132 Unknown    L10V, I13V, K14R, L19P, K20I, M36I, N37D, R41K, L63P, H69K, K70R, L89M  
NC_LC_1141 NC_LC_1141 Unknown    T12S, I15V, L19S, M36I, R41K, L63P, H69K, I93L  
NC_LC_1151 NC_LC_1151 Unknown    T12TI, I13V, K14R, G17E, K20I, E35Q, M36I, N37D, R41K, K45R, R57K, C67E, H69K, K70R, V82I, L89M  
NC_LC_1168 NC_LC_1168 Unknown    L10I, I13V, K14KR, I15V, E35D, M36I, R41K, L63P, H69Q, V77I, L89M  
NC_LC_1177 NC_LC_1177 Unknown    I13V, G17E, K20I, M36I, R41K, L63P, H69K, K70R, I72L, L89I  
NC_LC_1182 NC_LC_1182 Unknown    T12A, I13V, K14R, G16E, K20I, M36I, N37D, R41K, L63H, I64L, H69K, L89M E35T 
NC_LC_1184 NC_LC_1184 Unknown    I13V, K14R, K20I, E35Q, M36I, R41K, R57K, L63PT, I64ILM, C67E, H69K, K70R, V82I, L89M  
NC_LC_1196 NC_LC_1196 Unknown    I13V, I15V, L19S, K20I, E35D, M36I, R41K, I64M, H69K, K70R, A71AV, L89M  
NC_LC_1202 NC_LC_1202 Unknown    I13V, K20I, M36I, N37T, R41K, H69K, K70KR, V82VI, L89M  
NC_LC_1221 NC_LC_1221 Unknown    L10I, I13V, K14R, G16E, E35D, M36I, N37E, R41K, H69K, L89M  
NC_LC_1225 NC_LC_1225 Unknown    I13V, I15V, E35D, M36I, R41K, H69K, L89M  
NC_LC_1245 NC_LC_1245 Unknown    I13V, G16E, E35D, M36I, R41K, L63T, H69K, K70KR, T74S, L89M, I93L  
NC_LC_1257 NC_LC_1257 Unknown    T12S, I15V, L19I, M36I, N37E, D60E, Q61N, I62V, L63S, H69K, K70Q, A71T, I72T, I93L  
NC_LC_1272 NC_LC_1272 Unknown    L10I, T12A, I13V, K14R, I15V, K20I, M36I, N37D, R41K, I64L, H69K, L89M, F99L  
NC_LC_1276 NC_LC_1276 Unknown    I15V, E35D, M36I, R41K, H69K, T74S, L89M, I93L  
NC_LC_1294 NC_LC_1294 Unknown    T12S, I15V, L19IV, E35D, M36I, N37ND, R41K, K45KR, Q61DN, I62IV, L63T, I64IM, E65ED, H69K, T74S, L89M, I93L R57RKQ 
NC_LC_1306 NC_LC_1306 Unknown    T12S, I15V, L19I, M36I, R57K, D60E, Q61E, L63P, H69K, I93L  
NC_LC_1308 NC_LC_1308 Unknown    I13V, K14KR, I15IV, G17E, K20I, M36I, R41K, L63PS, I64M, E65D, H69K, I72V, L89M  
NC_LC_1312 NC_LC_1312 Unknown    L10IM, I13V, M36I, R41K, L63Q, I64V, H69Q  
NC_LC_1321 NC_LC_1321 Unknown    T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63LP, H69K, L89M, I93L  
NC_LC_1332 NC_LC_1332 Unknown    I13V, K14R, G16E, K20I, E35D, M36I, R41K, K43R, L63A, H69K, L89M  
NC_LC_1361 NC_LC_1361 Unknown    L10I, I13V, L19LP, K20I, M36I, R41K, L63V, C67N, H69K, V82I, L89M  
NC_LC_1370 NC_LC_1370 Unknown    L10V, I13V, I15IV, G17E, K20I, M36I, P39A, R41K, L63X, I64M, H69K, L89M  
NC_LC_1387 NC_LC_1387 Unknown    L10LI, I13V, K14KR, E35D, M36I, R41K, R57K, H69K, L89M  
NC_LC_1393 NC_LC_1393 Unknown    I13V, L19LP, K20I, M36I, R41K, H69K, V75VI, L89M  
NC_LC_1395 NC_LC_1395 Unknown    I15V, L19I, M36I, R41K, L63V, H69K, T74S, L89M, I93L  
NC_LC_1397 NC_LC_1397 Unknown    T12A, I13V, K14R, I15V, K20I, M36I, R41K, H69K, L89M  
NC_LC_1404 NC_LC_1404 Unknown    T12S, I15V, L19I, M36I, R41K, L63P, H69K, L89I, I93L  
NC_LC_1406 NC_LC_1406 Unknown    T12K, I13V, K14R, G17E, L19I, K20I, E35D, M36I, R41K, K43R, L63P, H69K, L89M  
NC_LC_1426 NC_LC_1426 Unknown    T12S, I15V, L19I, K20R, E35D, M36I, N37D, R41K, R57K, D60E, Q61E, H69K, L89M, I93L  
NC_LC_1474 NC_LC_1474 Unknown    I13V, I15V, E35D, M36I, R41K, H69K, L89M  
NC_LC_1483 NC_LC_1483 Unknown    I13V, K14R, K20I, M36I, R41K, H69K, L89M  
NC_LC_1495 NC_LC_1495 Unknown    I13V, K14R, K20I, E35D, M36I, R41K, H69K, L89M  
NC_LC_1504 NC_LC_1504 Unknown    T12S, I15V, L19I, M36I, N37K, R41N, L63P, H69K, I93L  
NC_LC_1517 NC_LC_1517 Unknown    T12S, I15IV, L19X, R41K, D60E, Q61E, I62V, L63P, H69K, T74A, V77I, L89M, I93L  
NC_LC_1526 NC_LC_1526 Unknown    T12S, I15V, L19I, M36I, R41K, K45R, H69K, I93L  
NC_LC_1546 NC_LC_1546 Unknown    L10M, I13V, M36I, R41K, L63Q, I64V, H69Q  
NC_LC_1553 NC_LC_1553 Unknown    I15V, M36I, R41K, R57K, Q61N, I93L  
NC_LC_1555 NC_LC_1555 Unknown    I15V, M36I, N37K, R41N, R57K, L63P, H69K, K70Q, I93L  
NC_LC_1569 NC_LC_1569 Unknown    I13V, K14R, G16E, K20R, E35D, M36I, R41K, H69K, L89M  
NC_LC_1583 NC_LC_1583 Unknown    I13V, K14R, G17E, K20I, M36I, R41K, H69K, K70R, L89M  
NC_LC_1587 NC_LC_1587 Unknown    I13V, M36I, R41K, C67H, H69K, V82I, L89M  
NC_LC_1589 NC_LC_1589 Unknown    T12A, I13V, K14R, I15V, K20I, E35D, M36I, R41K, G68E, H69R, V82I, L89M  
NC_LC_1591 NC_LC_1591 Unknown    L10I, I13V, I15V, E35D, M36I, R41K, R57K, D60E, I62V, L63LI, H69K, L89M  
NC_LC_1607 NC_LC_1607 Unknown    I13V, E35D, M36I, R41K, Q61E, H69K, K70KR, V82I, L89M  
NC_LC_1611 NC_LC_1611 Unknown    I13V, K14R, K20R, E35D, M36I, N37D, R41K, R57K, E65D, H69K, L89M  
NC_LC_1613 NC_LC_1613 Unknown    I13V, K14KR, E35D, M36I, N37E, R41K, K45R, R57K, D60E, I62IV, H69K, L89M  
NC_LC_1614 NC_LC_1614 Unknown    L10I, I13V, K14R, G16A, M36I, N37D, R41K, L63T, C67S, H69Q, L89I  
NC_LC_1616 NC_LC_1616 Unknown    I15V, M36I, N37K, R41N, L63P, H69K, I72V, I93L  
NC_LC_1632 NC_LC_1632 Unknown    T12S, I15V, L19V, M36I, R41K, L63V, H69K, L89M, I93L  
NC_LC_1636 NC_LC_1636 Unknown    I13V, K14R, K20I, M36I, R41K, D60E, Q61E, L63P, H69K, L89M  
NC_LC_1642 NC_LC_1642 Unknown    T4I, I13V, E35D, M36I, R41K, R57K, H69K, L89M  
NC_LC_1668 NC_LC_1668 Unknown    L10I, I13V, K14R, E35D, M36I, N37D, R41K, R57K, D60DE, Q61E, L63LV, H69K, L89M  
NC_LC_1669 NC_LC_1669 Unknown    I13V, E35D, M36I, R41K, R57K, H69K, L89M  
NC_LC_1670 NC_LC_1670 Unknown    I15V, G16E, M36I, L63T, H69K, L89M, I93L  
NC_LC_1680 NC_LC_1680 Unknown    T12TS, L19I, M36I, R41K, R57RK, D60E, H69K, K70KR, L89M, I93L  
NC_LC_1682 NC_LC_1682 Unknown    T12AS, I15V, L19IV, N37S, R41K, R57K, L63P, H69K, V77I, L89M, I93L  
NC_LC_1695 NC_LC_1695 Unknown    I13V, K14R, G17E, K20I, M36I, H69K, L89M  
NC_LC_1697 NC_LC_1697 Unknown    V11I, T12S, I13IM, I15IV, L19IV, M36I, R41K, I62V, L63V, H69K, T74S, L89M, I93L  
NC_LC_1703 NC_LC_1703 Unknown    L10I, I13V, K14R, M36I, R41K, K43R, L63P, H69K, L89M K20AV 
NC_LC_1730 NC_LC_1730 Unknown  L90M  I15V, L19I, R41K, R57K, L63LP, H69K, V77I, L89M, I93L  
NC_LC_1734 NC_LC_1734 Unknown    I13V, K14R, K20I, M36I, R41K, H69K, L89M  
NC_LC_1738 NC_LC_1738 Unknown    T12P, I13V, L19I, K20R, E35D, M36I, R41K, Q61QE, L63LF, H69KR, L89M  
NC_LC_1745 NC_LC_1745 Unknown    K20R, M36I, N37D, R41K, D60N, Q61E, I62V, L63LP, C67E, H69K, L89M, I93L  
NC_LC_1746 NC_LC_1746 Unknown    I13V, I15V, K20R, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M  
NC_LC_1782 NC_LC_1782 Unknown    L10IV, I13V, K14R, E35D, M36I, N37D, R41K, R57K, D60E, Q61E, H69K, L89M  
NC_LC_1793 NC_LC_1793 Unknown   G73GS V11VI, I13V, G16E, K20R, M36I, P39Q, R41K, D60E, I62V, L63A, H69K, V82I, L89I  
NC_LC_1811 NC_LC_1811 Unknown    L10IV, I13V, K14R, L19Q, K20R, E35D, M36I, N37D, R41K, R57K, H69K, V77VI, L89M  
NC_LC_1821 NC_LC_1821 Unknown    L10V, V11I, I13V, G16E, K20I, M36I, H69K, L89M  
NC_LC_1833 NC_LC_1833 Unknown    I13V, K14R, G16E, K20I, E35D, M36I, L63P, H69K, L89M, I93L  
NC_LC_1843 NC_LC_1843 Unknown    T12S, I15V, L19I, N37C, H69K, L89M, I93L  
NC_LC_1844 NC_LC_1844 Unknown    T12S, I15V, L19I, M36I, N37K, R41N, L63S, I64IV, H69K, V82I, L89M, I93L  
NC_LC_1851 NC_LC_1851 Unknown    I13V, K20I, T31TP, E35ED, M36I, R41K, H69K, K70R, L89M  
NC_LC_1869 NC_LC_1869 Unknown    I13V, E35D, M36I, R41K, I62V, H69K, K70R, L89M  
NC_LC_1876 NC_LC_1876 Unknown    T12S, I15V, L19I, M36I, K43R, L63P, H69K, T74S, L89M, I93L  
NC_LC_1885 NC_LC_1885 Unknown    T12K, I13V, K14R, G17E, K20I, E35D, M36I, R41K, R57K, I64L, H69K, L89M  
NC_LC_1886 NC_LC_1886 Unknown    I13V, K14R, K20I, E35Q, M36I, R41K, R57K, I62IV, L63PT, I64IL, C67E, H69K, V82I, L89M  
NC_LC_1897 NC_LC_1897 Unknown    I13V, K14KR, I15V, E35D, M36I, N37ND, R41K, D60DE, Q61E, H69K, L89M  
NC_LC_1903 NC_LC_1903 Unknown    T12S, I15V, L19I, M36I, R41K, K45KR, L63S, H69K, I93L  
NC_LC_1919 NC_LC_1919 Unknown    I13V, E35D, M36I, R41K, H69K, L89M  
NC_LC_1924 NC_LC_1924 Unknown    T12P, K14R, I15V, L19M, M36IV, R41K, L63P, H69K, L89M, I93L V56VI 
NC_LC_1927 NC_LC_1927 Unknown    I13V, K14R, K20I, M36I, R41K, H69K, K70R, L89M  
NC_LC_1930 NC_LC_1930 Unknown    I13V, G17E, K20R, E35D, M36I, P39PS, R41K, R57K, I62V, L63S, H69K, L89M  
NC_LC_1952 NC_LC_1952 Unknown    T12S, I13IV, L19V, M36I, R41K, L63P, I64L, K70KR  
NC_LC_1955 NC_LC_1955 Unknown    L19I, M36I, R41K, I64V, H69Y  
NC_LC_1957 NC_LC_1957 Unknown    T12S, I15V, L19I, E35ED, M36I, R41K, L63LP, H69K, T74S, L89M, I93L  
NC_LC_1969 NC_LC_1969 Unknown    I13IV, G16A, E35D, M36I, R41K, I62IV, L63V, H69K, V77I, L89M  
NC_LC_1995 NC_LC_1995 Unknown    T12K, I13A, K14R, K20I, M36I, N37D, R41K, L63P, H69K, K70R, L89M I85IM 
NC_LC_1997 NC_LC_1997 Unknown  D30N N88ND T12S, I13V, I15V, L19I, E35D, M36I, R41K, D60E, Q61E, L63P, H69K, T74A, L89M, I93L  

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