Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Feng (2016)
Title Diverse intersubtype recombinants and high frequency of drug-resistance mutations of HIV-1 among newly diagnosed and antiretroviral treatment naive HIV-infected individuals in Baoshan, a western prefecture of Yunnan, China.
Citation Direct Genbank Submission
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 103
NumPts 103
Subtype CRF08_BC, B, C, B + C, CRF01_AE, CRF07_BC, A, B + C + CRF01_AE, B + CRF01_AE, CRF78_cpx

 
  Page 1 of 2    Next >   Last Page Jump to Page   
Back To Query

Page 1   listing Isolate 1 to Isolate 100 from Total 103 Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
YNBS01HS YNBS01HS None None   V35T, T39K, K43E, V60I, I135V, K173A, Q174K, D177E, V179T, T200I, Q207A, R211S, V245Q, A272P, E291D  
YNBS01IDU YNBS01IDU None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162C, Q207E, R211K, V245Q, A272P, E291D  
YNBS02HS YNBS02HS None None   V35T, T39K, K43E, K173V, D177E, V179T, T200I, Q207A, R211S, F214L, V245Q, A272P, E291D  
YNBS04IDU YNBS04IDU None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS05HS YNBS05HS None None   V35T, E36A, T39D, S48T, V60I, K122E, I135V, I178V, Q207E, R211K, V245Q, K249Q, A272P, E291D  
YNBS06HS YNBS06HS None None   P19Q, V35T, T39D, V60I, D121Y, K122E, I135V, S162C, K173A, D177E, T200A, Q207E, R211K, V245Q, E248V, A272P, T286V, E291D G18G_R 
YNBS06IDU YNBS06IDU None None   K20R, V35T, E36A, T39E, E40D, S48T, E53D, V60I, K101R, I135V, S162C, Q207E, R211K, V245H, A272P, K277R, E291D  
YNBS07HS YNBS07HS None None   K101R, I135R, T200A, Q207E, R211K, V245E, A272P, K277R, E291D  
YNBS08HS YNBS08HS None None   E6N, K11T, V35T, T39E, S68G, I135T, S163T, T165I, K173V, Q174A, D177E, V179T, G196K, T200A, Q207A, R211K, V245E, A272P, V276I, L283I, E291D  
YNBS09HS YNBS09HS None None   E6D, V35T, T39K, K43E, D121H, K122E, I135T, K166R, K173I, Q174K, D177E, V179I, T200I, Q207A, R211S, K238R, I244V, V245E, A272P, E291D  
YNBS09IDU YNBS09IDU None None  V106I V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135V, S162C, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS10HS YNBS10HS None None   V35I, I135L, S162C, G196E, E203K, R211K, V245Q, A272P, K277R, E291D  
YNBS11HS YNBS11HS None None  E138K E6D, V8I, K11T, V35T, T39K, K43E, K49R, D123N, F124L, R125K, K126R, T131P, S134R, I135T, N136T, R143K, Y144F, N147H, V148G, W153R, K154E, A158T, S163T, K173V, D177E, D186E, T200V, Q207A, H235P, K238R, V241I, P243A, V245K, P247Q, D250E, K277R, T286A, E291D Y127K, A129D, I132K, T139P, L149V, P150A, Q151P, S156T, S162I, M164R, Q182P, G231E 
YNBS11IDU YNBS11IDU None None  V179D V35T, T39D, S48T, E53D, V60I, G112A, K122E, I135V, S162C, T200A, Q207E, R211K, V245Q, A272P, T286A, E291D  
YNBS12HS YNBS12HS None None   E6D, V8I, K11T, V35T, T39K, K43E, K49R, K122E, D123S, K173I, Q174K, D177E, T200A, I202V, Q207A, R211S, V245K, K277R, T286A, E291D  
YNBS12IDU YNBS12IDU None None   V8I, K20R, V35T, E36A, T39D, S48T, E53D, V60I, K122Q, E169D, T200A, I202V, Q207E, R211K, V245Q, A272P, K287Q, E291D R284M, T286D 
YNBS13IDU YNBS13IDU None None   V35T, E36A, T39D, S48T, V60I, K102R, K122E, D177E, R211K, V245Q, A272P, K281R, T286A, E291D  
YNBS14HS YNBS14HS None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS14IDU YNBS14IDU None None   V35T, E36A, T39D, S48T, E53D, V60I, K102Q, D121A, K122E, I135V, S162C, E194T, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS15HS YNBS15HS None None   E6D, K11S, V35T, E36D, T39K, K43E, K102R, K122E, D123S, K166R, K173I, Q174K, V179I, K238R, V245E, A272P, E291D  
YNBS15IDU YNBS15IDU None None   V35T, E36A, T39E, S48T, E53D, V60I, D123E, I135V, D177G, Q207E, R211K, V245Q, A272P, I274V, T286A, E291D  
YNBS16HS YNBS16HS None None   V35I, D123E, I135V, S162C, D177E, T200A, Q207E, R211K, V245Q, E248K, A272P, E291D  
YNBS16IDU YNBS16IDU None None   V35T, T39N, S48T, E53D, V60I, I135V, T200A, Q207E, R211K, V245Q, A272P, T286A, E291D  
YNBS17IDU YNBS17IDU None None A62V E138A L34V, V35T, E36A, T39D, S48T, E53D, V60I, T69S, I135V, S162C, T200I, Q207E, V245Q, A272P, Q278A, L279I, E291D  
YNBS18HS YNBS18HS None None   D121Y, K122E, I135V, S162C, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS18IDU YNBS18IDU None None   V35T, T39D, S48T, E53D, V60I, I178M, Q207E, R211K, V245Q, A272P, K277R, E291D  
YNBS19HS YNBS19HS None None   V35T, T39K, K43E, I135V, K173I, Q174K, D177E, V179T, S191F, Q207A, R211S, V245Q, A272P, T286A, E291D T107K 
YNBS19IDU YNBS19IDU None None   V35T, T39E, S48T, V60I, K122E, I135T, I178M, R211Q, V245Q, A272P, K277R, K281R, T286A, E291D  
YNBS20HS YNBS20HS None None   V35I, I135L, S162C, G196E, R211K, K238KR, V245Q, A272P, K277R, T286A, E291D  
YNBS20IDU YNBS20IDU None None   V35T, T39D, S48T, E53D, V60I, K64R, V90I, K122E, D123S, I135V, I178L, T200A, E204K, Q207E, R211K, F214L, V245Q, A272P, K277R, T286A, E291D  
YNBS21HS YNBS21HS None None   E6D, K11T, V35T, T39K, K43Q, V60I, S68G, K122E, D123N, K166R, K173I, Q174K, D177E, T200A, Q207A, K238R, V245T, A272P, K275R, V276I, T286A, E291D  
YNBS22HS YNBS22HS None None  V179D V8I, V35T, E36A, T39D, S48T, V60I, K102E, D121Y, K122E, I135T, S162C, D177G, T200A, Q207E, R211K, D237N, V245Q, A272P, K277R, L283I, T286A, A288G, E291D  
YNBS22IDU YNBS22IDU None None   V35T, T39N, S48T, E53D, V60I, K101R, K166R, Q207E, R211K, V245Q, A272P, K277R, E291D  
YNBS23HS YNBS23HS None None   I135L, S162C, G196E, L210M, R211K, V245Q, A272P, V276I, T286A, E291D  
YNBS23IDU YNBS23IDU None None   V35T, T39N, E40D, S48T, V60I, F171Y, T200I, V245H, A272P, V276T, K277R, T286V, E291D  
YNBS24HS YNBS24HS None None   V35M, I47L, K122E, T139K, S162C, D177E, T200A, Q207E, R211K, V245Q, A272P, V276I, T286X, K287Q, E291D  
YNBS25IDU YNBS25IDU None None  E138A E6D, V35T, E36A, T39D, S48T, N57NY, V60I, D121H, K122E, I135V, S162C, N175NI, T200A, Q207E, R211K, V245Q, A272P, E291D P95PS 
YNBS26HS YNBS26HS None None   V21I, V35I, K122E, I135L, S162C, G196E, R211K, V245Q, A272P, K277R, G285E, T286A, E291D  
YNBS27HS YNBS27HS None None  V106I E6D, V35T, T39K, K43E, V60I, D123E, I135T, K166R, K173I, Q174K, D177E, V179I, T200A, Q207A, R211S, V245E, A272P, T286A, E291D  
YNBS27IDU YNBS27IDU None None   V35T, E36A, T39D, V60I, S105A, I135R, S162C, T200A, Q207E, V245Q, A272P, K277R, E291D  
YNBS28HS YNBS28HS None None   V35T, D121H, K122E, I135R, S162C, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS28IDU YNBS28IDU None None   V35T, E36A, T39D, V60I, S105A, I135R, S162C, T200A, Q207E, V245Q, A272P, K277R, E291D  
YNBS29HS YNBS29HS None None   E6D, V35T, T39K, K43E, I135T, S162C, K173A, Q174K, D177E, V179T, T200E, Q207A, R211S, V245E, V276I, K281R, T286A, E291D  
YNBS31HS YNBS31HS None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162Y, V189I, Q207E, R211K, V245Q, A272P, K277R, E291D  
YNBS32HS YNBS32HS None None   K102Q, S162C, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS33HS YNBS33HS None None   V8I, G15R, K20R, K102R, I135V, S162C, K173R, Q174R, T200A, I202V, Q207E, R211K, V245Q, A272P, K277R, L283I, T286V, E291D  
YNBS35HS YNBS35HS None None   V35T, T39K, K43E, K122E, I135L, K173V, Q174K, D177E, V179T, T200I, Q207A, R211S, V245Q, A272P, T286A, E291D  
YNBS35IDU YNBS35IDU None None   V35T, E36A, T39E, S48T, V60I, K102R, E169K, F171Y, K173E, Q174K, I195T, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS36IDU YNBS36IDU None None   V35T, E36A, T39E, S48T, E53D, V60I, I135V, I202V, Q207E, R211K, V245Q, A272P, K277R, E291D  
YNBS37HS YNBS37HS None None   V35T, T39N, S48T, V60I, D121Y, K122E, I159V, K166R, K173A, Q174R, T200A, Q207D, R211K, V245Q, A272P, K277R, T286X, K287Q, E291D  
YNBS37IDU YNBS37IDU None None   E6D, V35T, E36A, T39D, S48T, E53D, V60I, S68G, T69N, E169D, Q207E, R211K, V245Q, A272P, K275R, V276I, E291D  
YNBS38HS YNBS38HS None None   V35T, T39D, S48T, V60I, T107S, K122E, S162C, Q174R, Q207E, R211K, V245Q, K249Q, A272P, G285E, T286A, E291D  
YNBS38IDU YNBS38IDU None None   V35T, T39K, K43E, V60I, T107S, V118I, S162C, K173E, Q174K, I202V, Q207E, R211S, K238R, V245K, E248D, A272P, E291D  
YNBS40HS YNBS40HS None None   I5V, E6D, K11T, V35T, T39K, K43Q, V60I, S68G, K122E, D123N, K173I, Q174K, D177E, V189I, T200A, Q207A, R211K, K238R, V245T, A272P, V276I, E291D  
YNBS41IDU YNBS41IDU None None   E6D, V60I, D121Y, K122E, I135R, S162C, K173A, Q174R, D177E, I178L, T200A, Q207E, R211K, V245Q, A272P, V276T, K277R, T286A, E291D  
YNBS42HS YNBS42HS None None   V35T, T39N, S48T, V60I, D121Y, K122E, S162A, K173A, Q174R, T200A, Q207D, R211K, V245Q, A272P, K277R, T286X, K287Q, E291D  
YNBS42IDU YNBS42IDU None None   V35T, T39D, S48T, E53D, V60I, K122E, D123N, I135V, E169D, I202V, Q207E, R211K, V245Q, A272P, K277R, E291D  
YNBS43HS YNBS43HS None None   V60I, D121Y, K122E, I135V, S162C, T200I, Q207A, R211K, A272P, K277R, T286A, E291D I270M 
YNBS44HS YNBS44HS None None   E6D, V35T, T39K, K43E, V60I, S68G, D121H, K122E, K173I, Q174K, D177E, V179I, T200I, Q207A, R211S, K238R, V245E, A272P, K277R, E291D  
YNBS44IDU YNBS44IDU None None   V35T, E36A, T39D, S48T, V60I, D121H, K122E, E169D, I178IM, Q207E, R211K, V245Q, A272P, T286A, E291D  
YNBS45IDU YNBS45IDU None None   V21I, V35T, T39D, S48T, V60I, S162C, I178L, Q207E, R211K, V245Q, G262E, A272P, T286A, E291D  
YNBS46IDU YNBS46IDU None None   Q23P, V35T, T39K, S48T, V60I, T200I, V245E, L246P, A272P, K277R, T286A, E291D K32M, K249M, T253P 
YNBS47HS YNBS47HS None None   V8I, V35T, E36A, T39D, S48T, V60I, K104R, D121H, K122E, I135R, A158S, S162DH, K166R, K173A, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS48IDU YNBS48IDU None None   K101Q, K122E, S162C, E169D, T200A, Q207E, R211K, E224D, V245Q, A272P, K277R, T286A, E291D  
YNBS49IDU YNBS49IDU None None   K32T, V35K, T39D, S48T, E53D, V60I, S162C, E169D, I178L, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS51IDU YNBS51IDU None None  E138A V35K, T39D, S48T, E53D, V60I, I135L, S162Y, K173E, Q207D, R211K, V245Q, A272P, V276I, K277R, T286A, E291D  
YNBS52IDU YNBS52IDU None None   V35T, T39DN, S48T, E53D, V60I, S162C, Q207E, R211K, D218E, V245Q, A272P, K277R, T286A, E291D  
YNBS53IDU YNBS53IDU None None   E6D, V35T, T39D, S48T, E53D, V60I, S68G, T69N, V90I, I135V, S162C, Q207E, R211K, V245Q, A272P, K277R, R284K, E291D  
YNBS54IDU YNBS54IDU None None   S68G, K102Q, I159V, Q174E, D177E, E203D, Q207A, R211K, K238R, V245E, K277Q, T286A, E291D  
YNBS55IDU YNBS55IDU None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, V245Q, A272P, K277R, T286A, E291D  
YNBS56IDU YNBS56IDU None None   V35T, T39N, S48T, E53D, V60I, K122E, I135V, S162C, I178L, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS57IDU YNBS57IDU None None   V35T, E36A, T39E, S48T, E53D, V60I, I135L, S162C, Q197K, Q207E, R211K, V245Q, A272P, K275R, V276I, K277R, T286A, E291D  
YNBS58IDU YNBS58IDU None None   E6D, V35T, E36A, T39E, S48T, I135V, S162C, T200A, Q207G, R211K, V245Q, A272P, K277R, T286A, E291D G18GA 
YNBS59IDU YNBS59IDU None None  V106I V35T, E36A, T39D, S48T, V60I, I135V, S162C, N175H, Q207E, R211K, L228H, V245Q, A272P, K277R, K281R, T286V, E291D  
YNBS61IDU YNBS61IDU None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T165I, Q197QK, V245Q, A272P, T286A, E291D  
YNBS62IDU YNBS62IDU None None T215D  V21I, V35I, G112A, I135V, S162C, E194D, I195L, T200A, Q207E, R211K, V245Q, A272P, G285E, T286A, E291D  
YNBS63IDU YNBS63IDU None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, E169D, T200A, Q207E, R211K, V245Q, A272P, V276T, K277R, L283I, E291D  
YNBS64IDU YNBS64IDU None None   E6D, V35T, T39K, K43E, K122E, D123S, I135T, K173I, Q174K, D177E, Q207A, R211S, V245E, A272P, K275R, V276I, T286A, E291D  
YNBS66IDU YNBS66IDU None None   V35I, S68G, K122E, I135V, Q174E, D177E, I178M, E203D, Q207A, R211K, K238R, V245E, K281R, T286A, E291D  
YNBS67IDU YNBS67IDU None None   V60I, D121Y, K122E, I135R, S162C, K173A, Q174R, D177E, I178L, T200A, Q207E, R211K, V245Q, A272P, V276T, K277R, E291D  
YNBS72IDU YNBS72IDU None None   K20R, V35T, E36A, T39D, S48T, E53D, V60I, K101R, I135V, S162C, Q207E, V245Q, A272P, K277R, T286V, E291D  
YNBS73IDU YNBS73IDU None None   V35T, T39D, S48T, V60I, K122E, I135R, Q207E, V245Q, A272P, K277R, T286A, A288T, E291D  
YNBS74IDU YNBS74IDU None None   V35T, T39N, S48T, E53D, V60I, I135V, S162C, T200A, Q207E, V245E, A272P, K275R, Q278H, E291D  
YNBS75IDU YNBS75IDU None None   V35T, E36A, T39D, S48T, K49R, D121H, K122E, T165I, D177E, I178M, Q207E, V245Q, A272P, K277R, T286A, E291D  
YNBS76IDU YNBS76IDU None None   V35T, E36A, T39D, S48T, E53D, V60I, K122E, I135V, S162C, I178L, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D  
YNBS77IDU YNBS77IDU None None   V35T, T39N, S48T, V60I, K101R, D177DE, V245Q, A272P, V276I, K277R, T286A, E291D  
YNBS78IDU YNBS78IDU None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135M, K166R, R211K, V245Q, A272P, K277R, E291D  
YNBS79IDU YNBS79IDU None None   E6D, V35T, T39K, K43E, K122E, S162C, Q174R, D177E, Q207A, R211S, K238R, V245K, A272P, K281R, E291D  
YNBS80IDU YNBS80IDU None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, I135V, S162C, Q207E, R211K, V245Q, A272P, K277R, K281R, E291D  
YNBS81IDU YNBS81IDU None None A62V  E6D, V35T, E36A, T39D, S48T, E53D, V60I, T69N, I135V, S162C, T200A, Q207E, R211K, V245Q, A272P, K275R, E291D  
YNBS83IDU YNBS83IDU None None   K122E, I159V, K173N, D177E, T200A, I202V, Q207E, R211K, A272P, K277R, L283I, E291D  
YNBS84IDU YNBS84IDU None None   V35T, T39N, S48T, V60I, D121Y, K122E, K166R, V245Q, A272P, K277R, E291D  
YNBS85IDU YNBS85IDU None None   V35T, E36A, T39E, S48T, V60I, K101R, D121Y, K122E, S162H, K166R, K173A, D177E, T200A, I202V, Q207E, R211K, V245T, A272P, V276I, K277R, T286P  
YNBS86IDU YNBS86IDU None None   V35T, E36A, T39E, S48T, V60I, I135V, S162C, Q207E, V245Q, K249Q, A272P, E291D  
YNBS87IDU YNBS87IDU None None  E138A V35K, T39D, S48T, E53D, V60I, K122E, I135V, S162C, Q207E, R211K, V245E, A272P, K277R, E291D  
YNBS88IDU YNBS88IDU None None   V35T, T39K, K43E, K64R, K173L, D177E, V179T, T200I, Q207A, R211S, F214L, V245Q, A272P, E291D  
YNBS89IDU YNBS89IDU None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, V179A, Q207E, R211K, V245Q, A272P, K281R, T286A, E291D  
YNBS90IDU YNBS90IDU None None   S68G, T107S, R172K, K173KR, Q174E, D177E, I178V, V179I, Q207A, R211K, K238R, V245E, K277Q, K281R, T286A, E291D I135GR 
YNBS92IDU YNBS92IDU None None  K103N S68G, D123E, Q174K, D177E, I178M, Q207A, K238R, V245E, T286A, E291D  
YNBS93IDU YNBS93IDU None None  E138A V35T, T39N, S48T, V60I, D121Y, K122E, I135V, S162C, D177E, Q197H, T200A, Q207E, R211K, V245E, A272P, T286A, E291D  

Database

Resources

Team