Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Jenabian (2015)
Title Pitfalls of antiretroviral drug resistance genotyping of HIV-1 Group M and Group N from Cameroon by sequenced-based assays.
Citation Niger Med J
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 42
NumPts 42
Subtype CRF02_AG, F, A, CRF18_cpx, D, B, G, A + J


Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
DR02 DR02 NRTI NNRTI  K103N, E138A V35T, E40ED, K49KR, V90I, K122KE, I135IV, S162A, K173T, Q174K, N175Y, D177E, T200A, Q207EG, R211K, V245Q, K281R, T286A, I293V, V317VA, S322T, I326V, G335D  
DR03 DR03 NRTI NNRTI D67N, T69D, K70R, M184V, T215F, K219Q V108I, V179D, Y181C, G190A K32I, V35T, T39M, V60I, L109V, V111VI, K122P, D123E, I135R, T165L, K173T, Q174K, D177E, T200A, Q207E, R211K, F214L, D218E, L228H, V245T, A272Q, V276T, T286A, V292I, I293V, T296TS, S322T, I326V, Q334H, G335D  
DR04 DR04 NRTI NNRTI M41L, D67N, M184V, L210W, T215Y K103NS, K238T V35T, E44D, K49KR, V60I, V111I, K122KE, I135T, S162A, K173T, Q174K, D177E, I178L, T200E, E203Q, Q207D, H208Y, R211K, V245K, A272P, T286A, I293V, P294T, S322A, G335D  
DR05 DR05 NRTI NNRTI M184V K103N, P225H K20R, V35T, T39K, K43Q, S68G, D121H, K122E, I135T, E169D, K173A, Q174K, D177E, G196E, T200A, Q207A, V245Q, T286A, E291ED, I293IV, E297EK, E312D, G335D  
DR06 DR06 NRTI NNRTI M184V, T215Y K103N, E138Q K11M, K20R, V35T, S48T, K49R, V60I, K102Q, D121Y, K122E, E169D, K173A, Q174K, D177E, I178IM, G196E, Q207E, R211K, F214L, V245K, E248D, A272P, K281R, L283LF, E291D, I293V, E297R, A304E, E312N, G335D  
DR07 DR07 NRTI NNRTI M41L, D67N, V75I, L210W, T215Y K103N, P225H V35T, T39A, K43KE, E44ED, V60I, V90I, V118I, K122E, D123N, R125RK, I132L, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, L228N, V245K, D250E, L283I, T286S, A288T, E291D, V292I, I293V, P294T, L295LM, S322T, G335D  
DR08 DR08 NRTI NNRTI D67G, K70R, M184I, T215F, K219Q V106A, F227L, M230L V35T, T39A, K49R, S68G, V90I, L109I, K122E, D123N, S162A, T165I, K173A, Q174K, D177E, T200A, Q207E, R211K, L228H, V245Q, E248D, T286A, E291D, I293V, P294T, S322T, D324E, I326V, G335D  
DR09 DR09 NRTI NNRTI M41L, L74I, M184V, T215F, K219N K103N, V108I, H221Y, F227L, M230L V35T, T39D, E44D, K49R, K122E, D123S, S162C, E169D, P170PL, K173T, Q174K, D177E, I178IM, G196E, T200A, Q207A, R211X, L228R, V245Q, E248D, D250E, T286A, E291D, I293V, E297EA, E312D, G335D  
DR10 DR10 NRTI NNRTI V75IT, M184IV, T215F L100LI, K103N, V108VI V35T, T39K, K43E, K49R, E53ED, V90I, V118I, K122E, D123N, I132L, I135V, S162D, K173T, Q174K, D177E, I178M, T200A, Q207E, R211K, K275R, T286A, E291D, P294T, S322T, I326IV, Q334QK, G335D I293IMV 
DR11 DR11 NRTI NNRTI M41L, L74V, M184V, L210W, T215F K103N, V108I, Y181C, G190A V35T, T39A, E44D, V118I, K122E, D123N, S162D, K173T, Q174K, D177E, I178M, G196E, T200A, E203K, Q207D, R211K, K223KE, L228H, V245Q, T286TA, E291D, V292VI, I293V, P294AT, E297K, A304E, S322A, I326V, G335D  
DR12 DR12 NRTI NNRTI M41L, D67N, T69DN, K70R, V75IM, M184V, T215F, K219Q Y181C, Y318F T7TA, K11T, K20KR, V35T, T39K, S48SL, V60I, D121H, K122E, D123S, I135V, A158S, S162D, K173A, Q174K, D177E, T200X, Q207A, R211K, F214FL, D218E, L228H, V245E, K281R, T286A, E291D, I293V, V317VA, G333E, G335N  
DR13 DR13 NRTI NNRTI M184V V108I, Y181C, H221Y K43E, E53ED, S68ST, D76X, V90I, I135V, R143RK, S162A, T165I, K173Q, Q174N, D177E, I178M, D192DE, I195IL, G196GR, Q197QE, T200A, Q207D, R211K, L228LR S48S*, P52PL, N54NK, N57NI, A62G, I63IKN, R83RI, E89EQ, L92LS, G93GE, S191S*, H198HN 
DR14 DR14 NRTI NNRTI T69DN, L74LV, M184V, T215Y L100LI, K101E, V108VI, Y181C, G190A I31L, V35M, T39KR, K43E, K49R, V90I, V111VI, V118I, I142IV, S162D, K173T, Q174K, D177E, I178M, T200A, E203ED, Q207E, L210S, R211A, L228R, V245K, E248D, A272P, T286TA, V292I, I293V, P294T, S322T  
DR15 DR15 NRTI NNRTI M184V, T215Y Y181C, H221Y V35T, T39S, S68G, K122KE, I135V, S162T, D177E, V179I, T200A, Q207E, P243H, V245Q, N265NK, Y271F, A272P, T286A, E291D, V292I, I293V, S322T, G335D  
DR16 DR16 NRTI NNRTI L74I, M184V, L210W, T215Y A98G, K103N, V108I N57NY, V60I, K82KN, K102KN, T107X, V118I, K122E, I135M, I142T, Q145X, K154KE, G155GR, A158X, I159IL, D177E, I178L, E194EQ, R199RT, E203K, Q207E, R211K, T216X, K223E, L228X, W229WS K64KE, E79E*, H96HY, A114AV, P157PQ, F160FC, M164MR, D192DH, L193LS, I202IK, P226PHQ, L234LV 
DR18 DR18 NRTI NNRTI D67N, K70R, M184V, T215F, K219E Y188L V35T, E36D, T39L, K49R, T69N, V90I, D123E, T139I, S162A, K173T, Q174K, D177E, T200A, Q207E, R211K, K223KT, L228H, V245E, A272P, K275R, T286TA, T290TA, E291D, V292I, I293V, P294T, P321Q, S322T, G335D P243K 
DR19 DR19 NRTI NNRTI M41L, D67N, L74V, M184V, T215Y, K219E K101E, V106I, V108I, E138A, G190S K43KR, K49KR, V60I, S68G, F87FL, Q91QH, K102KM, S117X, V118I, K122P, D123EQ, I135T, Q145QE, N147NK, W153WR, S162C, K166KE, E169EDG, F171X, R172X, K173KQ, D177E, I178L, Q182S, D185X, G196GE, T200A, K201X, I202X, E204K, Q207E, R211K, F214L, K223KQ, L228LH, D237X F61FL, P140PR, V148VE, L149LR, F160FC, M164MR, T165TR, L168L*, D186DG, V189VG, D192DV, L193L*, Y232YF 
DR20 DR20 NRTI NNRTI  K103KN V35T, E36ED, T39IL, V60VI, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, R211K, V245E, A272P, T286A, E291D, V292I, I293V, P294T, R307RS, E312D  
DR21 DR21 NRTI NNRTI M41L, M184V, T215F K103N V35K, E36D, T39TA, K43E, V60VI, K101R, K102R, K122E, D123S, I135T, S162A, K173T, Q174A, D177E, T200A, Q207E, R211K, V245Q, L283I, E291D, I293V, P294T, S322A, G335D  
DR23 DR23 NRTI NNRTI M184V, T215Y K103N K20R, V35T, T39L, V90I, A98S, I135T, S162A, K173T, Q174K, D177E, T200A, Q207E, R211K, V245K, S251H, T286A, E291D, V292I, I293V, P294T, S322T, I326V, G335D  
DR24 DR24 NRTI NNRTI  K103KN V35T, E36D, T39LS, K101KQ, K102KQR, S162A, K173T, Q174K, D177E, I178M, T200TA, E204EK, Q207E, R211RK, V245E, A272P, K275R, T286A, K287KR, E291ED, V292I, I293V, P294T P243K 
DR25 DR25 NRTI NNRTI K219R K103N, E138G, V179E, P225H, K238T V35T, T39L, V60VI, V90I, K122E, D123N, I135V, S162A, T165I, K173T, Q174K, D177E, T200TA, Q207E, D237N, V245Q, T286A, E291D, V292I, I293V, P294V, S322T, I326V, G335D  
DR26 DR26 NRTI NNRTI M184V, T215Y K103N I31L, V35T, E36D, T39L, K49R, V90VI, D123E, K173A, Q174K, D177E, G196E, T200A, Q207E, L228R, P243A, V245Q, E248D, D250S, A272S, Q278H, I293V, E297A, Q334QH, G335D  
DR27 DR27 NRTI NNRTI K65R, L74IV, Y115F, M184V L100I, K103N E6ED, V35T, T39S, K102R, I135V, S162A, K173T, Q174R, D177E, I178M, T200A, Q207E, R211K, V245Q, A272P, T286A, E291D, V292I, I293V, P294T, K311Q, S322T, I326V  
DR28 DR28 NRTI NNRTI K65R, M184V V106I, Y188FL K20KR, V35T, T39A, K46Q, S68KN, V90I, K104KR, I135V, S162A, K173T, Q174K, D177E, I178IM, T200A, Q207E, R211K, V245X, A272P, L283I, E291D, V292I, I293V, P294T, S322T, I326V, G335D  
DR29 DR29 NRTI NNRTI D67N, K70R, M184V, K219Q Y181C, H221Y V35T, E36D, T39S, E40D, S48T, K49R, V60I, I135V, S162A, K173AT, Q174K, N175Y, D177E, T200E, Q207E, P243T, V245Q, K281R, T286A, E291D, V292I, I293V, P294T, S322T, I326V, G335D  
DR30 DR30 NRTI NNRTI   V35T, K49R, I50IV, V60I, T69TS, A98S, K102Q, K122E, D123N, Q174K, D177E, I178M, T200A, Q207D, R211K, V245Q, E248D, D250E, A272S, L283I, V292I, I293V, E297A, D324E, L325I, I329V, Q334S, G335D  
DR31 DR31 NRTI NNRTI   V35T, K49KR, E53D, A98AS, D123E, I135V, S162A, F171Y, K173I, Q174K, D177E, I178V, T200E, K201KR, E203Q, Q207D, P243PT, V245E, T286A, E291D, I293V, S322A, I326V, G335D  
DR32 DR32 NRTI NNRTI V75VI K103KN V35T, T39A, E40D, S48T, K122E, S162A, K173T, Q174K, D177G, I178M, T200TA, Q207E, R211K, D250E, S251D, A272P, T286A, E291D, V292I, I293V, P294T, K311R, S322A, G335D  
DR33 DR33 NRTI NNRTI L74V, M184V, K219N L100I, K103N E42X, K43KQ, N54NI, T58TS, K102KN, K122E, D123E, P133PL, S134SG, I135V, F160X, S162A, K173T, Q174A, D177E, G196E, T200A, I202IV, Q207E, L228R S48RT, P52PS, V60VA, F61FS, K64K*Q, R72RS, K73KQ, D76DE, G93G*, T107TI, D121DG, N136N_XXXXXXXXX, G141G*, P217PQ 
DR34 DR34 NRTI NNRTI M41L, T69DN, L210LRW, T215Y  I31L, V35T, T39E, E44D, K49R, V118VI, K122E, D123N, K173I, Q174K, D177E, T200A, E203X, Q207E, H208HY, R211Q, L228R, P243H, V245Q, D250E, A272P, K275R, E291D, V292I, I293V, E297A, S322A, I329V, Q334L  
DR35 DR35 NRTI NNRTI M184V, T215Y K103N M16L, I31L, V35T, E36ED, T39L, K49R, S162A, K173T, Q174K, D177E, T200A, Q207E, R211K, V245Q, T286A, E291D, V292I, I293V, Q334L, G335D  
DR36 DR36 NRTI NNRTI K65R, M184V V106I, Y181C, H221HY K49KR, I50IN, Y56X, N57NHY, T58TS, V60I, K66KR, K82X, L109LV, V111I, D121DY, T131X, I132IL, T139X, I142X, N147NK, S162C, E169D, K173E, D177E, I178L, E204N, Q207E, R211K, F214L, T216TP K64KE, E89EG, D110DH, I159IR, F160FC, D237EQ 
DR37 DR37 NRTI NNRTI   V35T, T39L, D123E, K173A, Q174K, D177E, Q207E, R211K, P243A, V245Q, E248D, D250S, A272P, T286A, E291D, I293V, E297A, L303M, S322AT, I326V  
DR38 DR38 NRTI NNRTI M184V, T215Y Y181C V35T, E36D, E40D, K49R, V60I, I135V, S162A, K166R, K173I, Q174K, D177E, T200A, R211K, T240K, V245KT, K281R, T286A, A288S, E291D, I293V, P294T, S322T, G335D  
DR39 DR39 NRTI NNRTI M41L, M184V, T215FY A98G, K103N, V108I K20R, V35T, T39K, K43E, V60I, D121Y, K122E, I135T, S162A, K173A, Q174N, D177E, T200A, E203K, Q207E, H208HY, K223E, L228R, V245Q, A272P, T286A, E291D, V292I, I293V, P294T, E312D, S322A, I326V  
DR40 DR40 NRTI NNRTI  K103N, E138A V35T, K49R, V90I, S162A, K173T, Q174K, N175Y, D177E, T200A, Q207E, R211K, V245E, G262R, K281R, T286A, I293V, V317A, S322T, I326V, G335D  
DR41 DR41 NRTI NNRTI M41ML, D67N, K70R, M184V, T215Y, K219KE K103N, Y181C E6EK, E28EK, V35T, T39L, K101R, K102Q, K122E, I135V, T139A, S162A, K173I, Q174K, D177E, T200A, Q207E, R211K, V245K, E248D, K281R, T286A, V292I, I293V, E297K, S322T, I326V, G335D  
DR42 DR42 NRTI NNRTI L74V, Y115YF, M184V, T215F, K219N K101H, V106A, E138EQ, G190A, F227L, M230L V35T, T39M, E53ED, V60I, S68G, L109I, S162A, K173T, Q174K, D177E, T200A, Q207E, R211K, L228HQ, V245Q, A272P, I274V, K275R, Q278HY, T286A, E291ED, V292VI, I293V, P294T, E297KR, E312D, S322T, G335D  
DR43 DR43 NRTI NNRTI M41ML, M184V, T215Y Y181C V35T, T39M, S48E, K49R, V60VI, T69TN, I135R, I159IL, S162D, K166KR, K173T, Q174K, N175NY, D177E, V179I, T200A, I202V, Q207E, R211K, V245Q, E248D, T286A, E291D, V292I, I293V, S322T, I326V, G335D  
DR45 DR45 NRTI NNRTI M41L, D67N, M184V, L210W, T215Y K103KN K20R, V35T, T39K, K43E, V60I, V111VI, V118VI, K122P, I135T, I142V, K173A, Q174K, D177E, G196GE, Q197K, T200A, Q207E, H208HY, R211K, L228Q, I244V, V245T, A272Q, T286A, E291D, I293V, E297A, R307RK, E312N, Q334H, G335D  
DR46 DR46 NRTI NNRTI L74I, M184V, K219E K103N, V108I, E138G, H221HY, P225H P4HQ, P9PS, K20R, V35T, T39L, D123E, S162C, K173A, Q174K, D177E, I178M, T200A, Q207A, R211K, P243A, V245Q, E248D, A272P, K275R, Q278N, T286A, E291D, I293V, E297A, L303M, Q334N Q182K