Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Waleria-Aleixo (2008)
Title Drug resistance mutation profile and accumulation kinetics in human immunodeficiency virus-positive individuals infected with subtypes B and F failing highly active antiretroviral therapy are influenced by different viral codon usage patterns.
Citation AAC
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 911
NumPts 911
Subtype B, C, F, CRF12_BF, B + F, D, CRF05_DF, CRF01_AE, Unknown


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Page 1   listing Isolate 1 to Isolate 100 from Total 911 Clinical PR Isolates

02PE060852 02PE060852 PI  M46I, N88S K43T I3V, I13V, E34D, M36V, I62V, L63P  
08PR040128 08PR040128 PI  M46I, I84V, L90M G73T L10I, L19I, R41RK, D60DE, L63P, I64V  
08PR040132 08PR040132 PI    I15V, K20R, M36I, N37D, R41K, H69K, L89M, I93L  
08PR040161 08PR040161 PI    I13V, G16E, K20R, M36I, R57K, Q61E, L63S  
08PR040173 08PR040173 PI    L10I, I15V, E35D, M36I, N37D, R41K, R57K, D60E, Q61N, L63V, I93L  
08PR040177 08PR040177 PI  I54V, V82F, I84V, N88NS L33F, F53L L10I, T12S, I13V, K14R, Q18H, K45V, K55N, L63P, I64V, V77I  
08PR040178 08PR040178 PI  I54V L24I, L33F L10I, I13V, I15V, K20M, E35D, M36I, L63P, I64V, H69K  
08PR040180 08PR040180 PI  V82A, L90M  L10I, K20R, E35D, M36I, N37D, R41K, I62V, L63P, I64IM, A71V, I85V, I93L  
08PR040190 08PR040190 PI    E35EK, R57K, I62IV, L63HP  
08PR040199 08PR040199 PI    I15V, K20R, E35D, M36I, P39T, R41K, R57K, Q61D, I72R, T74S, L89M  
08PR040203 08PR040203 PI  I54IM, V82VA, I84IV, L90M L23LI, L33F, G73GS, L89V L10LI, T12S, I13IV, E34Q, N37NS, I62V, L63P, C67G, G68GE, A71V, V77I, I93L  
08PR040210 08PR040210 PI  V32I, M46I, I47A, I54V, V82A L33F L10I, L19I, N37D, R41T, K45R, I66F, A71V  
08PR040213 08PR040213 PI  M46I, I54V, V82VA, I84V, L90M L10F, L33F, T74P R41K, Q61E, I62V, L63P, A71V, V77I, I93L  
08PR040217 08PR040217 PI  M46I, L90M  L10V, I13V, R41K, L63P, A71T, G73X, T74S, V77I, I85V  
08PR050233 08PR050233 PI    E35D, I62V, L63P, F99L  
08PR050258 08PR050258 PI  D30N N88D E35D, M36I, N37K, R41N, Q61H, L63P, I64IV, H69K, V75I, I93L  
08PR050264 08PR050264 PI  D30N, L90LM L10F, K20T, N88D I13V, I15V, E35N, M36I, N37K, R41N, K45R, L63P, H69K, T74A, L89M, I93L  
08PR050266 08PR050266 PI  I50L  T12Q, K14T, I15V, K20R, E35D, M36I, R41K, R57K, A71V  
08PR050267 08PR050267 PI    K14KR, I15V, M36I, N37K, R41N, H69K, I93L  
08PR050280 08PR050280 PI  I54V, V82S L33F G16A, K20R, M36I, N37S, R41K, D60E, Q61D, I62V, H69K, A71V  
08PR050283 08PR050283 PI  V82S L33F I13V, I64V, I72V  
08PR050298 08PR050298 PI    L10V, T12K, I15V, K20M, M36I, R41K, R57K, Q61S, L63S, I93L  
08PR050329 08PR050329 PI    I13V, L19V, N37E, I62V, L63H, I64V, I72V, V77I, Q92K  
08PR050330 08PR050330 PI    I15V, G16E, E35D, N37H, P39S, R41K, L63P, I72V  
08PR050333 08PR050333 PI  V32I, M46I, I47V, V82A Q58E L10V, E34Q, I62V, L63P, I93L  
08PR050334 08PR050334 PI  M46L, I54V, V82F Q58E L10I, I13V, A22V, L33I, E35D, M36I, R41K, Q61N, I62V, L63I, I64V, H69R, K70R, L89M  
08PR050337 08PR050337 PI  L90M  T12S, I15V, M36I, N37S, R41K, I64V, V82I, I93L  
08PR050345 08PR050345 PI  M46L, I54V, V82A, L90M  L10IV, I15V, K20R, E35D, M36I, R41K, I62V, L63P, A71T, I93L  
08PR050355 08PR050355 PI    I15V, L19I, M36I, N37K, R41N, H69K, I93L  
08PR050356 08PR050356 PI  D30N L33F, N88D N37D, R57K, L63P, V77I, I93L  
08PR050377 08PR050377 PI  I54V, V82A L33F I13V, L19I, M36A, N37KQ, Q61H, L63P, H69K, L89M, I93L R41D 
08PR050387 08PR050387 PI    L10V, I13V, L19I, N37S, R57K, L63P, I64V, K70R  
08PR050393 08PR050393 PI    E35D, M36I, N37D, R41K, L63P, H69Q  
08PR050397 08PR050397 PI    L10V, I13V, L63P  
08PR050398 08PR050398 PI  I50L, N88T L10F, K43KT, Q58QE, T74TP I15V, G16Q, K20R, E35D, M36I, N37K, P39S, R41N, I62IV, I64V, H69K, A71V, L89M, I93L  
08PR050400 08PR050400 PI    K14E, I15V, L19I, M36I, L63D, E65K, I72T  
08PR050401 08PR050401 PI    I15V, M36I, N37K, R41N, L63LP, H69K, K70R, L89M, I93L  
08PR050449 08PR050449 PI  M46MI, I50L, N88S K20KT E34EA, E35D, M36I, R41K, I62V, L63P, A71I, I93L  
08PR060544 08PR060544 PI  V32I, M46I, L90M F53L L10I, I15V, K20R, E35D, M36I, R41K, R57K, Q61N, L63S, E65D, A71V, I72E  
08PR060545 08PR060545 PI    G16E, E35D, M36I, P39PS, R41K, Q61N, I62V, L63T, I64L, V77I, L89M  
08PR060546 08PR060546 PI  I54V, V82A, L90M F53L L10V, T12I, I15V, G16E, K20M, E35N, M36I, N37D, R41K, K55R, R57K, Q61N, K70KR, A71T, I72T, I85V, L89I, Q92K, C95V I66M 
08PR060561 08PR060561 PI    T12K, I15V, E35D, M36I, R41K, R57RK, Q61D, L63V, E65D, V82VI  
08PR060638 08PR060638 PI    T12E, I13IV, L19T, D60E, L63P, I64V, I72T  
08PR060639 08PR060639 PI  I54V, V82A, L90M K20T, G73S L10I, I15V, G16A, E35D, M36I, R41K, I62V, L63P, A71T  
08PR060710 08PR060710 PI  L90M G73T L10I, I15V, L19LI, D60E, L63P, I64V, I66V, H69Q, A71AT, V82I  
08PR060719 08PR060719 PI  G48V, I54T, V82A  L10I, I15V, L19I, K20R, E35D, M36I, N37K, R41N, L63T, H69K, A71V, T74S, I93L  
08PR060720 08PR060720 PI  I54V, V82T L24I, F53L L10V, I13V, K20R, E35D, M36V, N37T, R41K, R57K, I62V, L63P, I64V, A71V, T74S  
08RJ040107 08RJ040107 PI    I13IV, I15V, M36I, I62V, L63P  
08RJ040138 08RJ040138 PI  M46L, I54V, V82A L24I L10I, L33I, M36I, R41K, R57K, L63P, A71V, T74S  
08RJ040143 08RJ040143 PI    E35D, N37S, L63P, I72V, V77I  
08RJ040145 08RJ040145 PI  I84V, L90M G73S K20I, M36I, L63P, A71V  
08RJ040148 08RJ040148 PI  M46L, I84V, L90M T74P L10I, N37D, L63P, E65D, A71V, V77I, I93L  
08RJ040150 08RJ040150 PI    I13V, N37T, I62V, L63P  
08RJ04080 08RJ04080 PI    T12P, I15V, M36I, N37K, R41N, H69K, L89M, I93L  
08RJ04086 08RJ04086 PI  D30N, L90M N88D K20I, M36I, L63P, A71V, I72L  
08RJ04088 08RJ04088 PI    T12N, E35D, R41K, L63P  
08RJ04089 08RJ04089 PI  M46I, L76V, V82A Q58E T4S, L10I, I13V, G16A, K20R, M36I, G51A, L63P, K70KT, L89I  
08RJ04094 08RJ04094 PI    I15V, M36T, N37K, R41N, Q61H, H69K, L89M, I93L  
08RJ04095 08RJ04095 PI  M46L, I54V, L76V, V82A F53L L10V, I15V, K20R, E35D, M36I, N37D, K55R, R57K, Q61N, L63P, A71V, L89M, I93L  
08RJ050407 08RJ050407 PI  N88S K20T L10I, I15V, L19I, E35D, M36I, K45R, R57K, I62V, L63A, A71T, I85V, I93IM L90LW 
08RJ050431 08RJ050431 PI  D30N L10F, N88D I13V, I15V, K20R, E35D, M36I, N37K, R41N, L63P, H69K, V75I, I93L  
08RJ060474 08RJ060474 PI    N37NS, L63PT, I64V, I72IT, V77VI  
08RJ060476 08RJ060476 PI    R41K, L63P, H69Q  
08RJ060494 08RJ060494 PI    L19IV, K43R, L63P, Q92E, I93L  
08RJ060498 08RJ060498 PI    K14R, N37D, I64V  
08RJ060512 08RJ060512 PI    I13V, I15V, M36I, L63PT, H69K, I72V  
08RJ060525 08RJ060525 PI    R41K, D60E, Q61E, L63P, V77I, I93L  
08RJ060533 08RJ060533 PI  M46I, I54V, I84V, L90M L10F, L33F, N83D, N88D T4P, L19I, K20R, E34N, E35D, M36I, N37E, I62V, L63P, I66V, A71T, I72V, Q92R, C95F  
08RJ060573 08RJ060573 PI  D30N L10LF, N88D I13IV, K14R, I15V, G17D, K20R, E35D, M36I, N37NS, D60E, I62V, L63P, V75VI, I93L  
08RJ060575 08RJ060575 PI  V82AT  L10I, I13V, K14R, I15IV, N37S, R41K, L63P, I64V, C67E, I93L  
08RJ060599 08RJ060599 PI  V82VA, L90M G73S L10I, L63P, A71V, V77I, I93L  
08RJ060608 08RJ060608 PI   L33F, Q58E I13IV, G17E, E35D, N37K, P39S, R41K, R57K, D60E, Q61D, L63P, V77I, L89M  
08RJ060612 08RJ060612 PI  D30N L10LF, Q58E, N88D I13IV, I15IV, G17D, K20R, E35D, M36I, R41K, K45R, R57K, D60E, I62V, L63P, I64V, I93L  
08RJ060616 08RJ060616 PI    I3V, T4N, T12S, K20M, M36I, D60E, L63P, I64IV, E65D, I85IV  
08RJ060622 08RJ060622 PI  M46I, I54IV, V82F, L90M  L10IV, I13V, E35D, M36I, R41K, K55N, I62V, L63P, K70R, I93L  
08RJ060695 08RJ060695 PI  M46I, I54V, L76V, V82A L24I L10I, T12P, K14R, I15V, G16A, N37D, K55R, D60E, I62V, L63P, A71V, I72K  
08RJ060724 08RJ060724 PI  D30N, M46I, L90M F53L, N88D L10V, I15V, G16E, K20R, L23V, E35D, M36I, N37T, P39Q, R41K, R57K, Q61N, L63A, A71V, V77I, I93L  
RES10 RES10 PI  V32I, M46I, I47A, V82A  T12S, I13V, L19I, K20R, M36I, K43KR, R57K, Q61N, L63P, L89I  
RES107 RES107 PI  D30DN, M46MI, L90LM G73GS M36MV, I62IV, H69K, A71V, T74TS, V77VI  
RES108 RES108 PI    L10I, L33I, L63P, I64V, I93L  
RES117 RES117 PI    L19LV, E35D, M36I, I62V, L63P, H69Q  
RES128 RES128 PI    L63P, I72T  
RES192 RES192 PI    R41K, V77I, I93L  
RES222 RES222 PI  L90M K20T L10V, I15V, L19I, E35D, M36I, R41K, R57K, Q61N, L63A, T74S, I93L  
RES235 RES235 PI    I15V, E35D, M36I, R41K, R57K, Q61N  
RES247 RES247 PI    T12TA, I15IV, G16E, E35D, M36I, N37K, R41N, Q61QK, L63LR, H69K, L89M, I93L  
RES257 RES257 PI  M46I, L90M  L10V, K20M, P39S, K55KR, D60E, I62V, L63P, I64V, V77I, I93L  
RES274 RES274 PI  V32I, I47V  L10I, T12I, I15V, L19I, R41K, I62V, L63P, Q92E, I93L  
RES291 RES291 PI    L10I, M36I, N37D, K43R, I62IV, L63P, C67CY, H69K, I93L  
RES303 RES303 PI  I54V, V82A  L10I, K14R, I15V, L19I, K20R, E35D, M36I, R41K, R57K, Q61N, T74A, L89M  
RES310 RES310 PI    K14KR, I15V  
RES44 RES44 PI    L10I, I13V, K14R, I15V, G16E, E35D, P39S, L63Q, I64V  
RES72 RES72 PI  M46L, I54V, V82A  L10I, L38I, R41K, K55R, Q61QH, I62IV, L63P, A71T, I72E, I93L  
RES74 RES74 PI    R41K, I93IL  
RES80 RES80 PI  M46I, I84V G73T L10V, I13V, N37ND, I62V, L63P, I66F, H69R, I72L, V77I  
RES87 RES87 PI  M46I, I84V, L90M G73S, N88ND L10I, K20I, E35D, N37S, K55R, I62V, A71T, I72IR, V77I, T91TA G68A 
RES94 RES94 PI  D30N N88D L10I, N37NT, L63P, V77I, I93L  
RG6 RG6 PI  M46I, V82F, L90M L33F I13V, L63T, I72T, T74A, V77I  
RG64 RG64 PI  M46MI, I54L, I84V, L90M L33F, G73S L10I, I13V, N37D, P39Q, I62V, L63P, A71V, I72T, V77VI  
RG67 RG67 PI    L10V, L19Q, E35D, N37S, L63P, I64V, T74S, V77I, I93L