Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Chimukangara (2016)
Title HIV drug resistance testing among patients failing second line antiretroviral therapy. Comparison of in-house and commercial sequencing.
Citation J Virol Methods
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 25
NumPts 25
Subtype C

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
NC1 NC1 RTV, ATV 186 M46L, I54V, V82A L33F L10V, I13V, K14R, I15IV, G16E, L19V, K20R, V32VA, E35D, M36I, N37D, R41K, K55R, L63T, H69K, T74S, L89I, I93L  
NC10 NC10 LPV 586 M46I, I54V, L76V, V82A L10F, L24I, Q58E T12S, I15V, G16E, L19I, K20M, M36L, N37D, L63N, H69K, L89I, I93L, L97I  
NC11 NC11 LPV 21   I15V, L19I, E35D, M36I, P39T, R41K, K45R, R57K, I62V, L63V, H69K, K70R, A71T, I72E, I93L  
NC12 NC12 RTV, ATV 21   T12S, I15V, G16E, L19I, K20M, E35D, M36I, R41K, I62V, L63H, H69K, A71T, I93L  
NC13 NC13 LPV 202   T12S, I15V, L19I, M36I, R41K, D60E, I62V, L63P, H69K, L89M, I93L  
NC14 NC14 LPV 62   I15V, L19V, M36I, R41K, L63A, H69K, I93L  
NC15 NC15 LPV, RTV, ATV 570   T12S, I15V, L19I, M36I, R41K, D60E, H69K, L89M, I93L  
NC16 NC16 RTV, ATV 145 I54L K20T, K43T, T74P, L89T I15V, G16A, L19I, E35D, M36I, D60E, L63P, H69K, A71I, I93L  
NC17 NC17 RTV, ATV 309   K14R, L19I, M36I, R41K, H69K, L89M, I93L  
NC19 NC19 RTV, ATV 139   I15V, L19I, M36I, R41K, L63P, H69K, I72T, I93L  
NC20 NC20 RTV, ATV 113   I15V, E35D, M36I, N37D, P39Q, R41K, R57K, L63P, H69K, A71T, I93L  
NC22 NC22 RTV, ATV 197   L19I, M36I, R41K, D60E, L63P, H69K, L89M, I93L  
NC23 NC23 RTV, ATV 403   V11I, T12S, I15V, L19T, M36I, R41K, D60E, L63P, H69K, V82I, L89M, I93L  
NC25 NC25 RTV, ATV 109   T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L  
NC27 NC27 LPV, RTV, ATV 461   I15V, L19I, M36L, N37D, D60E, L63P, H69K, I93L  
NC28 NC28 RTV, ATV 99   T12S, I15V, L19T, K20R, M36I, R41K, L63E, E65D, H69K, I93L  
NC29 NC29 RTV, ATV 197   I15V, L19I, M36I, R41K, L63V, H69K, T74S, L89M, I93L  
NC3 NC3 RTV, ATV 278   K14R, I15V, G16A, L19I, M36I, R41K, H69K, K70R, L89M, I93L  
NC30 NC30 RTV, ATV 77   T12S, L19I, K20R, M36I, L63Q, H69K, L89M, I93L  
NC4 NC4 RTV, ATV 174 I50L, L90M L10F, Q58E, G73S I15V, L19I, K20R, E34N, E35D, M36I, R41K, K45R, L63P, H69K, V77I, I93L  
NC5 NC5 RTV, ATV 177   T12S, I15V, L19I, M36I, R41K, L63V, H69K, T74TA, L89M, I93L  
NC6 NC6 RTV, ATV 113 M46I, V82M T74P, L89T T12S, I15V, L19I, K20R, E35D, M36I, R41K, D60E, L63P, H69K, I93L  
NC7 NC7 RTV, ATV 132  L10F, L23I, Q58E, G73T T12S, L19I, L33I, E34D, E35D, M36I, N37D, L63P, H69K, V75I, I85V, I93L  
NC8 NC8 None    L10I, T12S, I15V, L19I, M36I, R41K, D60E, L63V, C67S, H69K, L89M, I93L  
NC9 NC9 LPV 41   T12S, I15V, L19V, M36I, R41K, L63T, E65D, H69K, I93L  

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