Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Onywera (2017)
Title Surveillance of HIV-1 pol transmitted drug resistance in acutely and recently infected antiretroviral drug-naïve persons in rural western Kenya.
Citation PLoS ONE
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 87
NumPts 87
Subtype A, D, C, CRF35_AD, G, CRF05_DF, CRF45_cpx, CRF01_AE

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
0010704 0010704 None    I13V, R41K, L63S, I64V  
0101402 0101402 None    L19LV, R41K, K43KR, L63S, I64V, H69Y, V77I  
0101602 0101602 None    I13V, K14R, E35D, M36I, N37D, R41K, R57K, Y59H, L63P, H69K, L89M  
0160301 0160301 None    I13V, I15V, K20R, E35D, M36I, R41K, R57K, H69K, K70KR, I72IV, L89M  
0160803 0160803 None    I13V, K14R, E35D, M36I, R41K, R57K, I62V, L63P, I64M, H69K, K70E, L89M  
0190202 0190202 None    I13V, E35D, M36I, N37D, R41K, H69K, K70R, L89M  
0210801 0210801 None    L10M, I13V, K14R, G16E, E35D, M36I, R41K, R57K, L63GV, H69K, L89M  
0212301 0212301 None    K14R, I15V, K20R, E35D, M36I, N37D, R41K, R57K, H69K, L89M  
0241302 0241302 None    I13V, K20R, E35D, M36I, R41K, R57K, L63P, H69K, L89M  
0260202 0260202 None    L10I, I13V, L33V, M36I, R41K, L63I, I64V, H69Q  
0300501 0300501 None    K14KR, I15V, M36I, N37K, R41N, K45R, L63X, H69K, L89M, I93L  
0301602 0301602 None    I13V, K14R, E35D, M36I, N37D, R41K, K45R, R57K, L63P, H69K, L89M  
0330302 0330302 None    L10I, I13V, K14R, E35D, M36I, N37E, R57K, L63P, H69K, L89M  
0351701 0351701 None    I13IV, E35D, M36I, R41K, R57K, H69K, L89M  
0361402 0361402 None    I13V, G17E, L33M, E35D, M36I, R41K, K45R, R57K, L63P, H69K, K70R, V77I, L89M  
0391802 0391802 None    I13V, E35D, M36V, N37D, R41K, L63S, H69K, L89M  
0401402 0401402 None    I15V, E35D, M36I, N37T, R41K, R57K, H69K, T74TS, L89M  
0500603 0500603 None    V11I, I13V, G16E, E35D, M36I, R41K, R57K, L63H, H69K, K70R, L89I  
0540802 0540802 None    I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69K, L89M  
0551003 0551003 None    T12S, I15V, L19I, E35D, M36I, N37D, R41K, R57K, L63V, H69K, L89M, I93IV  
0570901 0570901 None    I15V, L19I, M36I, N37K, R41N, L63T, H69K, I93L  
0601702 0601702 None    I13V, L33V, M36I, R41K, D60E, I62V, L63P, I64V  
0620602 0620602 None    L10V, I13V, G16E, K20I, E35D, M36I, N37D, R41K, R57K, H69K, K70R, T74K, L89M  
0630401 0630401 None    I13V, K20KR, E35D, M36I, R41K, R57K, H69K, L89M  
0630403 0630403 None    I13V, E35D, M36I, R41K, K45R, R57K, L63AP, I64IM, H69K, L89M, I93IL  
0631701 0631701 None    M36I, R41K, H69K, L89M  
0631702 0631702 None  M46MIL  M36I, R41K, H69K, L89M  
0631801 0631801 None    L10V, I13V, E35D, M36I, N37D, R41K, R57K, D60E, I62V, H69K, L89M, N98K  
0680702 0680702 None    I13V, R41K, I64V, I72V  
0681903 0681903 None    I15V, M36I, R41K, K70R  
0691701 0691701 None    T12S, I15V, L19I, M36I, N37K, R41N, L63P, H69K, I72M, L89M, I93L  
0721403 0721403 None    I13V, M36I, R41K, L63Q, I64V, H69Y, I72V  
0751101 0751101 None    I13V, K14KR, I15IV, E35D, M36I, R41K, R57K, H69K, L89M  
0751401 0751401 None    L19T, M36I, R41K, L63P, I64L  
0751402 0751402 None    I13V, G16E, E35D, M36I, R41K, R57K, H69K, K70R, L89M  
0760801 0760801 None    I13V, K14R, K20I, M36I, R41K, L63P, C67G, H69K, V82I, L89M  
0792002 0792002 None    I13V, K14R, E35D, M36I, R41K, K45R, H69K, L89M  
0810403 0810403 None    I13V, L19V, K20R, M36I, R41K, R57K, H69K, K70R, L89M  
0840201 0840201 None    L10V, I13V, M36I, R41K, D60E, I64V, K70KR  
0841402 0841402 None    L10I, I13V, K14R, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M  
0851401 0851401 None    L10LI, I13V, K14KR, I15IV, E35D, M36I, R41K, R57K, H69K, V77VI, L89M  
0860701 0860701 None    K14R, L19I, M36I, R41K, L63S  
0860702 0860702 None    K14R, L19I, M36I, R41K, I62V, L63S, I72V  
0900602 0900602 None    I13V, E35D, M36I, N37E, R41K, K45R, R57K, H69K, K70R, L89M  
0921502 0921502 None    V11I, I13V, K20R, E35D, M36I, N37D, R41K, R57K, Q61E, H69K, L89M  
0951302 0951302 None    I13V, K14R, L19I, K20R, M36I, R41K, R57K, L63P, H69K, L89M  
0951602 0951602 None    I13V, G16E, K20R, E35D, M36I, R41K, L63A, G68E, H69K, K70R, L89M, T91V, I93L  
0952201 0952201 None    T12S, I15V, L19I, M36I, R41K, R57K, L63V, H69K, T74A, L89M  
0991102 0991102 None    G16E, P39S, R41K, L63Q  
0991602 0991602 None    L10I, I13V, K14R, E35D, M36I, N37D, R41K, R57RK, H69K, L89M  
1020901 1020901 None    I13V, K20KR, E35D, M36I, R41K, R57K, Q61QE, L63P, H69K, L89M  
1041502 1041502 None    I13V, N37T, R41K, L63P, K70R, V77I  
1060801 1060801 None    L10V, I13V, I15V, E35D, M36I, R41K, R57K, I62V, L63V, I64M, H69K, L89M  
1071402 1071402 None    L10V, T12I, I13V, G16E, E35D, M36I, R41K, K45R, R57K, H69K, I72V, L89M  
1140305 1140305 None    I13V, E35D, M36I, N37E, R41K, K45R, R57K, H69K, K70R, L89M  
1140902 1140902 None    E35D, M36I, N37D, R41K, R57K, D60E, Q61QK, H69K, L89M  
1150201 1150201 None    I13V, E35D, M36I, R57K, L63T, H69K, L89M  
1150202 1150202 None    I13V, E35D, M36I, R57K, L63T, H69K, L89M  
1161702 1161702 None    I13V, K14R, E35D, M36I, N37E, R41K, H69K, K70R, L89M  
1170301 1170301 None    I13V, I15V, G16GE, M36I, R41K, R57RK, I62V, L63HQ, I64V, E65D  
1170802 1170802 None    L10LI, I13V, K14KR, E35D, M36I, N37D, R41K, H69K, L89M  
1201401 1201401 None    I13V, E35D, M36I, R41K, I64V  
1211101 1211101 None    I13V, I15V, K20R, E35D, M36I, N37D, R41K, R57K, H69K, L89M  
1211102 1211102 None    I13V, I15V, K20R, E35D, M36I, N37D, R41K, R57K, H69K, L89M  
1211302 1211302 None    E35D, M36I, N37E, R41K, R57K, H69K, L89M  
1241001 1241001 None    I13V, I15V, K20R, E35D, M36I, N37D, R41K, R57K, H69K, I72M, L89M  
1241302 1241302 None    R41K, L63P, I64L, H69Q  
1270103 1270103 None    I13V, E35D, M36I, R41K, I62V, L63S, H69K, L89M  
1281602 1281602 None    I13V, K14R, K20R, E35D, M36I, N37D, R41K, R57K, H69K, L89M  
1311802 1311802 None    I15V, E35D, R41K, L63P, I64V, I72IV  
1330501 1330501 None    I13V, L33V, N37S, R41K  
1331301 1331301 None    L10V, K14KR, G16GE, K20KR, E35D, M36I, P39PS, R41K, R57K, H69K, L89M  
1341808 1341808 None    L10V, I13V, M36I, R41K, I64V  
1360102 1360102 None    I13V, K14R, I15V, E35D, M36I, R41K, R57K, H69K, L89M  
1370501 1370501 None    I13V, K20R, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M  
1401802 1401802 None    L10V, I13V, I15V, E35D, M36I, N37D, R41K, R57RK, H69K, L89M  
1411802 1411802 None    I13V, K14R, G16E, E35D, M36I, R41K, R57K, H69K, L89M  
1431801 1431801 None    I13V, I15V, M36I, R41K, K45R  
1472001 1472001 None    I13V, K14R, E35D, M36I, R41K, K45R, R57K, L63P, E65K, H69K, L89M  
1480701 1480701 None    L10V, I13V, G16E, E35D, M36I, N37D, R57K, L63V, I64M, H69K, L89M  
1490702 1490702 None    I13V, E35D, M36I, R41K, R57K, H69K, L89M  
1531302 1531302 None    T12K, I13V, K14R, K20I, M36I, N37S, R41K, I64M, C67E, H69K, K70R, V82I, L89M  
1531703 1531703 None    I13V, K14R, L19V, E35D, M36I, N37D, R41K, K45R, L63S, H69K, L89M  
1541701 1541701 None    L10I, I13V, E35D, M36I, N37D, R41K, R57K, L63V, H69K, K70R, L89M  
1561801 1561801 None    I13V, M36I, N37D, R41K, L63S, I64V  
1570502 1570502 None    T12TA, I13V, K14KR, E35D, M36I, N37ND, R41K, R57RK, D60DE, I64V, H69K  
1580506 1580506 None    I13V, G16A, E35D, M36I, R41RK, K45R, R57K, Q61E, L63P, H69K, K70R, V77I, L89M  

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