Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Billings (2017)
Title HIV-1 genetic diversity among incident infections in Mbeya, Tanzania.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 97
NumPts 97
Subtype C, A, D, CRF10_CD

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
CO0041V3 CO0041V3 None    D25E, V31I, M50I, Q95P, F100Y, L101I, T112V, T124N, T125A, K136Q, F185FY, V201I, T218I, L234I, A265V, R269K, D278A  
CO0053V5 CO0053V5 None   A128T S17N, L28I, F100Y, L101I, T112V, T125A, K136Q, V201I, K215N, T218I, L234I, A265V, R269K, D278A, S283G, D288N  
CO0077V1 CO0077V1 None    D25E, V31I, L101I, T112V, T124A, T125A, K136Q, V201I, K215N, T218I, L234I, A265V, R269K, D278A, S283G  
CO0098V3 CO0098V3 None    K14R, A21T, V31I, M50I, I60M, I72V, I113V, S119T, T124A, T125A, V126F, G134N, K136Q, F139Y, D167E, V201I, T206S, T218I, L234I, S283D, D288N  
CO0260V5 CO0260V5 None    E11D, K14R, A21T, A23V, D25E, V31I, M50I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134S, K136Q, D167E, V201I, N222K, L234V, S283G  
CO0272V4 CO0272V4 None    E11D, K14R, I72V, T112V, I113V, T124A, T125A, G134D, K136Q, D167E, V201I, L234I, S283G  
CO0329V1 CO0329V1 None   T97A E11D, K14R, V31I, V32I, D41N, I60M, T112I, I113V, T124A, T125A, V126F, G134D, I135V, K136Q, D167E, V201I, I203M, I208L, E212A, Q216H, T218I, D232E, L234I, D253H, S283G  
CO0330V4 CO0330V4 None    K14R, V31I, I60M, I72V, T112V, S119T, T124A, T125A, V126F, K136Q, D167E, V201I, K211R, L234I, S283G  
CO0335V1 CO0335V1 None    S17N, M50L, I72V, T112V, I113V, T124A, T125A, V201I, T218I, K219Q, N222K, L234I, D256E, S283G  
CO0377V4 CO0377V4 None    K14R, V31I, M50T, I72V, E96D, F100Y, L101I, T112V, S119T, T124TA, T125A, K136Q, V201I, T206S, T218I, L234I, A265V, R269K, D278A, S283G  
CO0434V7 CO0434V7 None    V31I, M50V, I60M, I72V, T112V, I113V, S119P, T125A, V126F, G134S, K136Q, F139Y, D167E, V201I, K211R, Y227F, L234V, A265V, R269K, D286N  
CO0439V5 CO0439V5 None    E11D, K14R, I72V, L101I, G106A, T112I, T124A, T125A, G134D, K136Q, D167E, I200M, V201I, I203M, I220L  
CO0543V2 CO0543V2 None   T97A K14R, V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, L234I, S283G, R284G, D286N  
CO0694V7 CO0694V7 None    K14R, V31I, M50T, I72V, E96D, F100Y, L101I, T112V, S119T, T124A, T125A, K136Q, V201I, T206S, T218I, L234I, A265V, R269K, D278A, S283G  
CO0735V4 CO0735V4 None    L45I, T112V, I113V, T124A, T125A, K136Q, V201I, T218I, K219Q, L234I, D278A, S283G  
CO0778V2 CO0778V2 None    S17N, V31I, I72V, I84M, F100Y, L101I, T112V, S119P, T124N, T125A, K136Q, V201I, T206S, K215N, T218I, L234I, A265V, R269K, D270N, D278A G163I 
CO0783V0 CO0783V0 None    K14R, R20K, D41N, M50I, L63V, I72V, L101I, T112V, I113V, T124A, T125A, G134D, K136Q, D167E, V201I, D270N, S283G  
CO0815V3 CO0815V3 None    K14R, S24N, D25E, L45V, M50T, L101I, T112I, T124S, T125A, K136Q, V201I, K215N, T218L, L234I, D278A, S283G  
CO0844V2 CO0844V2 None    S39C, M50I, I72V, F100Y, L101I, K111R, T112V, T124S, T125A, K136Q, D167E, V201I, N222T, L234I, I268L, R269K, D278A, S283G, R284G  
CO0907V4 CO0907V4 None    S17N, R20K, M50I, I72V, T112V, T124A, I161X, V201I, K211R, L234I, A265V  
CO0921V2 CO0921V2 None    K34R, M50I, I72V, F100Y, L101I, T112I, T124A, T125A, K136Q, H171Y, V201I, T218I, L234I, D278A, S283G  
CO0933V4 CO0933V4 None    T122I, T124A, T125A, K136Q, V201I, L234I, R269K, D278A, S283G  
CO0984V2 CO0984V2 None    D25E, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, I208M, K211T, T218I, L234I, A265V, R269K, D278A, S283G  
CO3016V6 CO3016V6 None    S17N, R20K, L74M, F100Y, L101I, T112V, T124A, T125A, F181L, V201I, K211R, L234I, A265V, D278A, S283G, R284G  
CO3022V7 CO3022V7 None    K14R, R20K, V31I, I72V, G106A, V110I, T112V, I113V, T124A, T125A, K136Q, V201I, L234I, S283G  
CO3038V3 CO3038V3 None    T124A, T125A, G134N, K136Q, D167E, K173R, V201I, L234I, S283G  
CO3058V6 CO3058V6 None    V31I, I72V, I84M, P90S, Q95P, F100Y, L101I, T112V, T124N, T125A, K136Q, F181L, V201I, L234I, R269K, D278A  
CO3063V5 CO3063V5 None    E11D, S24N, D25E, V31I, V32I, M50I, L101I, T112I, T124N, K136Q, D167E, V201I, K215N, T218I, L234I, A265V, R269K, D278A, S283G  
CO3083V4 CO3083V4 None    E11D, V31I, L45Q, I60M, I72V, A98G, T112V, I113V, T124A, T125A, V126F, K136Q, D167E, V201I, I203M, Q216N, N222T, R224Q, L234I, D270N, S283G  
CO3103V3 CO3103V3 None    E11D, S17N, M50L, I84IM, A91E, F100Y, L101I, T112V, S119R, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, D278A, S283G  
CO3168V4 CO3168V4 None    V31I, M50I, I72V, Q95H, F100Y, L101I, T112V, T124A, T125Q, K136Q, V201I, L234I, R269K, D278A, V281M, S283G  
CO3256V2 CO3256V2 None    S17N, D25E, S39C, M50I, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, Q137R, K188R, V201I, T218S, Y227F, L234V, A265V  
CO3278V6 CO3278V6 None    D25E, L45Q, M50R, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, S283G I268S 
CO3301V1 CO3301V1 None    E11D, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, F139Y, D167E, V201I, K211T, Q216N, L234I, A265V, R269K, D278A, C280S, S283G  
CO3326V4 CO3326V4 None    E11D, V32I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134S, I135V, K136Q, V201I, L234I, D278A, S283G  
CO3337V2 CO3337V2 None    S17N, M50L, I72V, K103R, T112V, T124A, T125A, K127R, K188R, I200L, V201I, K211R, T218I, L234I, A265V, R269K, D278A  
CO3365V2 CO3365V2 None    K14R, V31I, M50I, I72V, L101I, G106A, T124S, T125A, D167E, G193R, V201I, S255N, K273Q, S283G T112G 
CO3415V1 CO3415V1 None    D25E, V31I, M50T, I84M, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, L234I, D256E, S283G  
CO3426V5 CO3426V5 None    D6E, S17N, M50I, L101I, T112I, T124N, T125A, K136Q, D167E, K173R, I182V, V201I, T206S, K211R, T218I, K219Q, L234I, A265V, R269K, D278A, S283G, D286N  
CO3440V7 CO3440V7 None    V31I, L45Q, M50I, I60V, L101I, A105V, T112V, T124S, T125A, K136Q, V201I, T206S, I208L, T218I, L234I, R269K, D278A  
CO3468V1 CO3468V1 None    S17N, L45V, I72V, T112V, I113V, T124A, T125A, G134D, D167E, V201I, Q221S, L234I, D256E, I268L  
CO3473V1 CO3473V1 None    V37I, I72V, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, T218L, L234I  
CO3504V7 CO3504V7 None    K14R, A21T, V31I, I60M, I72V, E96D, T112I, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, T218I, L234I, V249I, S283G  
CO3589V1 CO3589V1 None    D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124N, T125A, A128V, K136Q, D167E, V201I, T218I, L234I, A265V, R269K, D278A, S283G H12HR 
CO3637V5 CO3637V5 None    K14R, D25E, M50I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, D256E, D278A  
CO3651V7 CO3651V7 None    K14R, D25E, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, I268V, S283G, D286N  
CO3672V4 CO3672V4 None    S17N, V31I, L45Q, I72V, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A, V281M  
CO3718V3 CO3718V3 None    K14R, V31I, M50T, I60M, I72V, E96D, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, F139Y, D167E, S195T, V201I, L234I, S283G  
CO3728V2 CO3728V2 None    K7R, M50I, I72V, V88I, F100Y, L101I, T124A, T125A, K136H, V201I, K211R, T218I, K219Q, L234I, A265V, D278A, S283G  
CO3800V5 CO3800V5 None    E11D, S17N, D25E, V31I, I72V, L74I, E96D, F100Y, L101I, G106A, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, D278A, S283G  
CO3812V6 CO3812V6 None    V31I, M50I, I72V, Y99F, L101I, K111R, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
CO3817V2 CO3817V2 None   T97A K14R, V31I, L101I, K111R, T112V, T124A, T125A, K136Q, V201I, K211Q, Q216R, T218I, K219Q, L234I, R269K, D278A  
CO3873V1 CO3873V1 None    D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V165I, V201I, L234I, A265V, R269K, D278A, S283G T218IV 
CO3878V2 CO3878V2 None    E11D, K14R, A21T, V31I, I60M, I72V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, F139Y, D167E, V201I, K211R, Q216N, N222H, L234I, S283G, D286N  
CO3892V6 CO3892V6 None    E11D, S24N, D25E, V31I, L45Q, A91T, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218L, I220V, L234I, R269K, D278A, S283G  
CO3969V6 CO3969V6 None    S24G, D25E, Q95P, L101I, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, A265V, S283G  
CO3979V3 CO3979V3 None    S17N, D25E, V31I, M50I, I72T, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
CO6022V7 CO6022V7 None    E10D, V31I, S39N, M50I, I72V, I84M, F100Y, L101I, T112V, T124S, T125A, K136Q, D167E, V201I, L234I, R269K, D278A  
CO6033V4 CO6033V4 None    K14R, V31I, K34R, D41N, G59E, G70E, I72V, L101I, T112V, S119P, T124N, T125A, I135V, K136N, V201I, L234I, A265V, D278N, S283G D25K 
CO6040V4 CO6040V4 None    D6N, K14R, D25E, V31I, K34R, G59E, I72V, L101I, T112V, S119P, T122I, T124N, T125A, I135V, K136N, V201I, L234I, A265V, D278N, S283G  
CO6041V3 CO6041V3 None    S17N, V31I, M50I, F100Y, L101I, G106A, K111Q, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
CO6095V1 CO6095V1 None    A21T, M50R, I72V, L74V, T112V, I113V, T124A, T125A, V201I, S283G  
CO6106V5 CO6106V5 None    D25E, V31I, M50T, I84M, A91E, F100Y, L101I, T112V, S119R, T124N, T125A, K136Q, D167E, V201I, T206S, I208L, K211R, K215N, T218I, L234I, R269K, D278A, S283G  
CO6139V7 CO6139V7 None    S24N, D25E, F100Y, L101I, T112V, T124A, T125P, K136Q, D167E, K173R, V201I, T218L, K219Q, L234I, D278A, S283G  
CO6146V7 CO6146V7 None    D25E, A91E, F100Y, L101I, T112V, S119R, T124N, T125A, K136Q, V201I, L234I, I251L, R269K, D278A  
CO6161V5 CO6161V5 None    E11D, K14R, A21T, V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, K173R, V201I, L234I, A265V, S283G, R284G, D286N  
CO6172V5 CO6172V5 None    D25E, L45Q, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, D270N, D278A, S283G  
CO6273V3 CO6273V3 None    D6E, K14R, S17N, V31I, S39N, M50I, I72V, T112V, T124S, K136Q, K173R, V201I, Q216N, L234I, D253E, S255T, A265V, R269K, D278A, S283G  
CO6273V4 CO6273V4 None    D6E, K14R, S17N, V31I, M50I, I72V, T112V, T124S, K136Q, K173R, V201I, Q216N, L234I, S255T, A265V, R269K, D278A, S283G  
CO6322V4 CO6322V4 None    K14R, D25E, V31I, L45Q, M50L, I72V, F100Y, L101I, G106GA, T112V, S119G, T124A, T125A, K136Q, V201I, T218I, L234I, D278A  
CO6405V4 CO6405V4 None    S17N, R20K, T124A, T125A, V126L, I135V, G163E, V201I, K211R, L234I  
CO6471V1 CO6471V1 None    K14R, D25E, V31I, F100Y, L101I, T124A, T125A, K136H, K188R, V201I, K211R, I217IT, T218I, L234I, A265V, R269K, D278A, S283G  
CO6480V4 CO6480V4 None    S17N, V31I, M50I, I72V, I84M, L101I, T112V, T124N, K136Q, I182V, V201I, T218I, L234I, D288N  
CO6540V3 CO6540V3 None    S17N, D25E, V31I, L45V, I72V, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, V281G, S283G  
CO6545V3 CO6545V3 None    S17N, D25E, V31I, L45V, I72V, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
CO6577V5 CO6577V5 None    M50L, I72V, I84M, L101I, T112V, I113V, T124A, V201I, I203M, T218I, L234I, A265V  
CO6592V5 CO6592V5 None    K14R, A21T, V31I, I60M, E96D, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, F139Y, V201I, L234V, S283G, D286N  
CO6631V3 CO6631V3 None    K14R, S24N, D25E, V31I, M50I, D55N, L74I, F100Y, L101I, T112V, S119A, T124A, T125A, K136Q, V201I, T206S, K215N, T218I, L234I, D278A, S283G  
CO6637V7 CO6637V7 None    D3E, K14R, A21T, V31I, E35Q, S39N, I60M, I72V, I113V, S119T, T124A, T125A, V126F, G134N, I135V, K136Q, F139Y, D167E, K173R, V201I, T206S, Q216H, L234I, A265V, I268V, S283G, D286N K7I 
CO6644V2 CO6644V2 None    S24N, D25E, A91E, F100Y, L101I, T112V, S119R, T124N, T125A, K136Q, V201I, T218I, L234I, I251L, R269K, D278A  
CO6647V5 CO6647V5 None    V31I, L74I, I84M, E96D, L101I, T112V, T124N, K136Q, K173R, V201I, T206S, K219Q, L234I, D278A  
CO6650V1 CO6650V1 None    M50L, I72V, I84M, L101I, T112V, I113V, T124A, V201I, I203M, T218I, L234I, A265V  
CO6728V5 CO6728V5 None    I72V, F100Y, L101I, T112V, T125A, K136Q, G193R, V201I, T206S, T218I, K219Q, L234I, A265V, S283G  
CO6763V2 CO6763V2 None    S17N, K34R, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218L, K219Q, L234I, D278A, S283G  
CO6785V5 CO6785V5 None    S24N, D25E, A91E, L101I, T112V, S119R, T124N, T125A, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
CO6811V5 CO6811V5 None    S17N, I72V, E96D, G106A, T112V, I113V, T122I, T124A, T125A, D167E, V201I, T206S, T218I, K219Q, I220L, N222S, L234I, D278A, S283G, R284G  
CO6812V3 CO6812V3 None    K14R, D25E, V31I, M50T, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, K211R, T218I, K219Q, L234I, D278A, S283G  
CO6830V7 CO6830V7 None    K14R, A21T, V31I, D41N, L101I, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, F139Y, V201I, L234V, S283G, D286N  
CO6838V1 CO6838V1 None    D25E, V31I, L45Q, M50I, I72V, L74M, I84M, A91E, F100Y, L101I, T112V, S119R, T125A, K136Q, V201I, T218I, L234I, D278A, S283G  
CO6847V7 CO6847V7 None    D25E, M50I, I72V, A91E, F100Y, L101I, T112V, S119R, T124N, T125A, K136Q, V201I, T218I, L234I, I251L, D278A  
CO6854V1 CO6854V1 None    K14R, R20K, D25E, K34R, F100Y, L101I, T112V, T124A, T125A, K136Q, G193D, V201I, T218I, L234I, A265V, D278A, S283G  
CO6867V2 CO6867V2 None   T97A S17N, V31I, M50I, I72V, F100Y, L101I, T112V, T124S, T125A, W131R, K136Q, D167E, K173R, V201I, K211Q, T218I, Q221K, L234I, D256E, R269K, D278A  
CO6917V7 CO6917V7 None    D25E, V31I, M50I, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, T218L, L234I, A265V, R269K, D278A, S283G  
CO6952V1 CO6952V1 None    M50L, I72V, I84M, L101I, T112V, I113V, T124A, V201I, I203M, T218I, L234I, A265V  
CO6974V7 CO6974V7 None    V31I, D41N, M50T, S57G, I60M, I72V, T112V, I113V, F121C, T124A, T125A, V126F, K136Q, D167E, K173R, V201I, Q216H, Q221K, L234I, S283G  
CO6975V2 CO6975V2 None    S17N, I72V, T112V, I113V, T122I, T124A, T125A, D167E, V201I, T206S, T218I, K219Q, I220L, L234I, D278A, S283G, R284G G106AV 
CO6980V0 CO6980V0 None    D25E, L45Q, M50I, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, T218I, L234I, R269K, D278A  

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