Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Cho (2013)
Title Phylogenetic analysis of near full-length HIV type 1 genomic sequences from 21 Korean individuals.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 24
NumPts 24
Subtype B, CRF02_AG, D

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
02OSG1 02OSG1 RTI RTI   T200R, I202V, V245T, I293V, E312V, T377I, S468P, E546K  
03HJY8 03HJY8 None None   K122E, I135T, T200I, F214L, I293V, I375V, E404D, S519N, K527N L209M 
03KDE11 03KDE11 None None   K122E, I135L, T200L, R211K, V245M, I293V, E344D, T377M, K385R, K390R, L452S  
03KGS5 03KGS5 RTI RTI   K122E, Q145H, T200I, R211K, Q222R, V245M, I293V, E312Q, G335S, G359S, A371V, I375V, A376T, S468P, E516K L109R, I167M, L205V 
03LSH1 03LSH1 RTI RTI   K122E, T200I, Q207H, R211K, I293V, I326V, T377M, K390R, L452A, S468P, S519N, V548I  
03YGS3 03YGS3 None None  V108I W88*, K102Q, S162C, T200I, L228H, P236L, V245M, A272G, I293V, E312Q, S468P, T470M, Q547H, V548I  
04CWS5 04CWS5 None None   K102R, I178V, T200I, R211K, V245M, A288S, I293V, E312V, T377I, E449D, S468P, K530R, A554S  
04KBH8 04KBH8 None None   K20R, V35T, K49R, K122E, D177E, T200A, E204K, Q207E, R211K, F214L, V245T, D250E, T286A, E297K, I329L, R356K, A360T, T377Q, K385R, K390R, K431R, V435I, K451R, K454R, V467I, S468P, H483N, A554N G15V 
04KJ8 04KJ8 None None   K122E, A158S, Q197K, V245M, I293V, E312V, N447S, S468P, K527N  
04KJS8 04KJS8 RTI RTI   K122E, T200I, V245M, A272P, I293V, T377M, L452S, S468P, L491S, V548I  
04KMH5 04KMH5 None None   K122E, T200I, Q207E, R211K, V245I, K277R, I293V, V317A, Q334L, S468P, V548I  
04KMK5 04KMK5 None None   K122E, I135V, T200I, R211K, V245M, I293V, I329V, R356K, M357T, K390R, T397S, S468P, V548I  
04KYR8 04KYR8 None None   K20R, T69N, V118I, K122E, I135T, Q174R, N175Y, T200M, K201R, Q207E, F214L, V245R, I293V, I329V, Q334L, K390R, W410V, S468P  
04LHS6 04LHS6 RTI RTI M184V  P4Q, E6S, V8I, K122E, Q174K, T200I, I202V, Q207E, R211K, V245M, T286A, I293V, E312T, E344D, S468P, L469I, H483N, L491S, K558R I411D 
04LSK7 04LSK7 None None   K122E, T200I, Q207E, Q278H, I293V, E312V, G359S, T450S, S468P, K527N, E529K, V548I S268G 
04MHI10 04MHI10 None None  N348I V35A, E36N, T39A, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, R211S, V245K, V276I, T286A, E291D, V292I, I293V, P294I, S322T, I326V, I341F, F346C, R356K, M357K, G359S, A371V, I375V, K390R, K395R, T403M, E432D, Q464H, D471E, Q480H, L491S, K512N, S519N, Q524E, E529D, A534S, A554S  
04WK7 04WK7 None None   K122E, D123E, I135T, I293V, I375V, T377I, S468P  
05CSR3 05CSR3 None None   V8I, D177N, T200A, E204D, R211K, N265D, A272P, V276A, T286A, E297K, I326V, Q334L, M357V, T377Q, K385R, T386I, A400I, T403M, N447S, L452A, V458I, S468T, H483Y, S519N, K530R, A534T, A554N  
05YJN2 05YJN2 None None   K122E, I135T, T200A, V245M, I293V, P313Q, I326V, T377S, S468P, H483Y  
07KYY4 07KYY4 None None   K102R, K122E, I135V, R143K, Q151R, A158P, I178M, Q197H, R199K, T200I, Q207P, H208L, V245M, I293V, E312T, Q334L, K390R, S468P, K527N, E529A N147T, H198L 
07MHI10 07MHI10 None None  N348I V35A, E36N, T39A, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, R211N, V245K, V276I, T286A, E291D, V292I, I293V, P294I, P313A, S322T, I326V, I341F, F346C, R356K, M357K, G359S, A371V, I375V, E378K, K390R, K395R, T403M, E432D, E449V, A455P, Q464H, D471E, Q480H, L491S, K512N, S519N, Q524E, E529D, A534S, A554S A360E, H361N 
08MHI11 08MHI11 None None   V35T, E36N, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, I244M, V245K, V276I, T286A, E291D, V292I, I293V, P294I, E312A, S322T, I326V, F346Y, R356K, M357K, G359S, A360S, A371V, I375V, K390R, K395R, T403M, E432D, Q464H, K465N, D471E, T472I, Q480H, L491S, K512N, S519N, Q524E, E529D, A534S, A554S  
99HYH2 99HYH2 None None   T200I, V245L, K277R, I293V, S379G, K390R, S468P, S519N, V548I  
HIV-1wk HIV-1wk None None   K122E, I135T, T200I, I293V, S322A, I375V, T377I, S468P  

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