Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Cuevas (2010)
Title Biological and genetic characterization of HIV type 1 subtype B and nonsubtype B transmitted viruses: usefulness for vaccine candidate assessment.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 39
NumPts 39
Subtype B, G, C, CRF02_AG, A, F

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
ESX1589-2 ESX1589-2 Unknown    E11D, S24N, V31I, V32I, L101I, T112M, S119T, T124A, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
ESX1608-8 ESX1608-8 Unknown    K14R, V31I, M50T, I60M, L101M, T112V, I113V, T124A, T125A, V126F, K136Q, D167E, V201I, L234I, S283G  
ESX1628-2 ESX1628-2 Unknown    E11D, Y99F, L101I, T112I, T124A, T125A, G134D, K136T, V201I, T206S, Y227F, L234I, D253Y, N254H, S255N, D256E, S283G  
ESX1702-3 ESX1702-3 Unknown    D25E, V31I, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K215N, T218I, L234I, R269K, D278A, S283G  
ESX230-10 ESX230-10 Unknown    K14R, V31I, S57G, L68I, L101I, T112V, T125A, G134N, I135V, K136T, K160R, V201I, T206S, L234I, R269K, D270N, S283G  
ESX772-8 ESX772-8 Unknown    K14KR, T112I, T124A, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
ESX963-4 ESX963-4 Unknown    E11D, R20K, V32I, L101I, S119G, T122I, T124S, T125A, G134N, K136T, V201I, T206S, I217V, Y227F, L234I, S255N, D256E, S283G  
ES_P1261 ES_P1261 None    L45Q, I72V, I84M, L101I, T112V, T124A, T125A, G134N, I135V, K136T, R187K, V201I, T206S, K211R, T218I, L234I, A265V, R269K, S283G, D288N  
ES_P1423 ES_P1423 None    S17N, V31I, L63I, L74I, L101I, T112I, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, D278N, S283G  
ES_P1981-2 ES_P1981-2 None    K14R, S17N, M50I, L101I, T112I, T124A, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, S283G, E287K  
ES_P2008 ES_P2008 None    I72V, S119G, T122I, T124N, A265V  
ES_P2021-3 ES_P2021-3 None    E11D, K14R, L45V, M50I, L101V, T125A, F181L, G193D, V201I, T206S, D256E, I267V, D279N, S283G, D288N  
ES_P962 ES_P962 None    S24N, V31I, Y99F, L101I, T112M, S119G, T124N, T125A, G134N, K136T, K173R, V201I, T206S, T218I, L234I, D256E, S283G  
ES_X1870 ES_X1870 None    K14R, S17N, L28I, L101I, S119T, T124A, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
ES_X1890 ES_X1890 None    E11D, S17T, M50I, L101I, K111T, T122I, T124N, D286N  
ES_X1936 ES_X1936 None    E11A, D25E, V31I, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K215N, T218I, L234I, R269K, D278A, S283G  
ES_X1958 ES_X1958 None    L101I, T112I, T122I, T124A, T125V, G163E, N254K, S255T, D256E, S283G  
ES_X1959 ES_X1959 None    E10D, L101I, S119P, T122I, T124A, T125A, T206S, D207E, T218S  
ES_X1998 ES_X1998 None    K7R, E11D, A23V, L28I, P30A, V37I, S39C, I60V, S119T, I203M, K211R  
ES_X2102 ES_X2102 None    E11D, K14R, S24N, D25E, S39C, L45V, M50I, V201I, D253E, N254D, D286N  
ES_X2110 ES_X2110 None    E11D, K14R, V31I, I60M, I72V, T112V, I113V, S119P, T124A, T125A, V126F, G134S, I135V, K136Q, D167E, K173R, V201I, L234I, S283G  
ES_X2118-2 ES_X2118-2 None    D25E, V31I, M50I, I72V, L74I, F100Y, L101I, T112V, T124A, T125A, L158LI, F181FL, V201I, T218I, L234I, A265V, D278A, S283G, D286N A105AT, K136PQ, K159KT 
ES_X2149 ES_X2149 None    D6E, E11D, S17T, V31I, V32I, V37I, I72V, L101I, I113V, S119P, T122I, T124N, T125A, D167E, I182V, V201I  
ES_X2210-3 ES_X2210-3 None    P30A, I72V, T124A, I182V, V201I, T206S, K215N, N222H, S230N  
ES_X2231 ES_X2231 None    E11D, R20K, T124A, I203M, A205S, I208L, D256E  
ES_X2363-2 ES_X2363-2 None    E11D, S17T, D25E, V31I, V37I, S39N, M50L, K71R, I72V, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, V165I, V201I, T218I, L234I, D278A, S283G  
ES_X2400-3 ES_X2400-3 None    R20K, T124A, I203M, A205S, I208L, D256E  
ES_X2425-2 ES_X2425-2 None    R20K, L101I, G106A, K111N, S119P, T125A, G193E, V201I, T218I, L234I, D256E, D286N  
ES_X2456-2 ES_X2456-2 None    E11Q, K14R, M50I, I72V, L101I, T112V, S119P, T122I, T124A, T125A, G134D, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, D270H, S283G  
ES_X2510-2 ES_X2510-2 None    D6E, E10D, S17N, M50I, L101I, T124A, I220L, A265V  
ES_X2515-3 ES_X2515-3 None    D6T, K7E, E10D, S39C, L101I, V201I, Q216H  
ES_X2524-2 ES_X2524-2 None    S17N, R20K, L28I, L45Q, I72V, I84L, L101I, S119T, T124G, T125S, K136Q, V201I, A205S, K211R, T218I, L234V, D256E, D279G, S283G  
ES_X2556-3 ES_X2556-3 None    S17N, V31I, M50I, I72V, S119R, S123C, V201I, S230N, R284G  
P2149-3 P2149-3 None    D6E, K14R, R20K, G134R, V201I, T206S, K211R, R284G  
X1999-5 X1999-5 None    K14R, S24G, V32I, L101I, K111R, T112V, T124A, T125A, G134N, K136T, T206S, Y227F, L234I, S255N, D256E, S283G  
X2555-2 X2555-2 None    E11D, S24N, P30S, I60M, S119P, T122I, T124A, T206S, T218S, D279N  
X2574-2 X2574-2 None    D6E, E10D, S24N, D25E, E35Q, S39N, L45I, I72V, S119P, T125V, K156N, Q216H, T218I, D253H, D256E  
X2634-2 X2634-2 None    K14R, S17N, L101I, T112I, T124A, G134N, K136T, G163M, K173R, V201I, T206S, I208L, L234I, S255N, D256E, S283G  
X2689-2 X2689-2 None    S17N, L28I, P30A, I72V, I113V, T125A, K156N, V201I, T206S, D256E  

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