Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Tongo (2015)
Title Near full-length HIV type 1M genomic sequences from Cameroon : Evidence of early diverging under-sampled lineages in the country.
Citation Evol Med Public Health
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 8
NumPts 8
Subtype CRF02_AG, F, A + CRF02_AG, G, CRF11_cpx

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
BS11 BS11 None None   V35T, E36D, T39L, I135T, S162A, K173T, Q174E, D177E, T200A, Q207E, V245Q, A272P, K275R, K277R, T286A, E291D, V292I, I293V, L295I, E297A, L303M, Q334P, G335D, F346H, R356K, M357R, G359S, S379G, T386I, K390R, A400T, K431T, E432D, D471E, H483W, L491S, Q509H, S519N, K527Q, A534S, A554N  
BS13 BS13 None None   V35T, I135V, S162A, K173S, D177E, T200A, Q207A, R211K, F214L, K220E, P243S, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E312D, I326V, G335D, M357K, G359S, K366R, T369V, A371V, I375V, A376G, A400M, W410Y, P421H, E432D, V435A, A446S, D471E, K476R, Q480Y, H483Y, K512R, L517I, S519N, Q524K, K527E, A534S, A554N  
BS29 BS29 None None   V35T, T39L, S48T, K122E, D123N, S162A, K173T, Q174K, D177E, T200A, Q207E, R211K, V245Q, E248N, K277R, T286A, E291D, I293V, V317A, S322T, I326V, G335D, M357K, G359S, I375V, A376S, K390R, T403M, E432D, V466I, V467I, T470P, D471E, T477A, H483L, Q487K, L491S, I495V, K512R, E514D, S519N, Q524K, K527G, E529D, V531I, A534S, I542M, G543E, G544E, A554S  
BS40 BS40 None None   P4S, K11A, V35T, D123N, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, R211N, P243S, V245Q, K281R, T286A, E291D, I293V, E312D, S322T, I329L, G335D, M357K, G359S, V365I, A376T, T386I, I393IM, A400T, T403M, E432D, V435I, D471E, Q480H, L491P, K512R, S519N, Q524K, K527E, E529D, A534S, A554R, V559I  
BS48 BS48 None None   V35T, E40D, K49R, V60I, K122E, D123S, T139A, A158S, K173R, Q174K, D177E, I178M, G196E, Q207S, V245Q, E248D, D250E, S251N, A272P, K275R, V276I, L279I, T286X, E291D, V292I, I293V, P294T, E297K, E308X, I326V, Q334L, G335D, F346H, R356K, M357R, R358G, G359S, K366R, T369S, A376S, T377M, I382T, T386V, Q394R, E399D, A400V, E413D, Q428R, K431T, V435S, F440Y, R463K, V466I, V467I, S468T, L469I, T470Q, D471E, H483Q, L491P, K512R, S519N, A534T, A554S  
BS55 BS55 None None   V35T, E40D, D123E, S162Y, K173T, Q174K, D177E, G196E, E203Q, Q207D, V245Q, D250E, E291D, V292I, I293V, P294T, L303M, K311R, G335D, R356K, M357R, G359S, A376S, T377I, S379G, T386I, K390R, A400I, K431T, V467I, T470I, D471E, H483Q, Q509H, K527Q, A534S, Q547K, A554S  
BS57 BS57 None None   E6D, V35T, K122E, D123N, K173T, Q174K, D177E, T200E, I202V, Q207E, F214L, V245Q, E248D, D250E, A272P, V292I, I293V, E297A, K311R, I329V, Q334L, G335D, R356K, M357R, G359T, K366R, A371V, A376C, T377L, T386I, K390R, A400I, E404D, V435I, A437V, L452I, R461K, S468T, D471E, Q480E, H483Y, I506L, Q509L, S519N, K527R, K530R, A554S F389V 
BS72 BS72 None None   V35T, T39K, I142V, T165I, E169D, K173E, Q174R, D177E, G196E, I202V, Q207A, R211S, V245Q, E248D, D250N, A272P, L283I, T286A, E291D, I293V, E297A, Q334H, G335D, F346H, R356K, M357R, G359S, S379G, T386I, K390R, E399D, A400T, E432D, V435L, L469I, D471E, Q480H, H483C, L491P, I505V, K512R, S519N, Q520L, Q524K, K527E, A534S, A554S  

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