Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Cheriro (2015)
Title High prevalence of HIV low abundance drug-resistant variants in a treatment-naive population in north rift Kenya.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 59
NumPts 59
Subtype A, D, B, C, CRF10_CD

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
NLHG-100 NLHG-100 None None   E6D, V35T, S48T, I50IFL, E53EK, V60I, L100F, D121Y, K122E, I135T, S163T, T165I, K173S, Q174K, V179I, Q207A, R211K K103DE, W229W* 
NLHG-101 NLHG-101 None None   E6D, V35T, V60I, D121DH, I135T, K173T, Q174K, D177E, T200A, Q207A, R211S  
NLHG-103 NLHG-103 None None   P4S, K11T, K20KR, V21X, V35T, T39KQ, G45GR, G51GR, E53EK, V60I, K102Q, K104X, S117SP, V118VI, D123N, I159IV, K173A, Q174K, V179I, I202V, Q207A, R211S K22K*, S48S*Y, K66KN, K73KN 
NLHG-104 NLHG-104 None None   I31X, K32X, A33X, L34X, V35X, E36X, I37X, C38X, T39X, E40X, M41X, E42X, K43X, E44X, G45X, K46X, I47X, S48X, K49X, I50X, G51X, P52X, E53X, N54X, P55X, Y56X, N57X, T58X, P59X, V60X, F61X, A62X, I63X, K64X, K65X, K66X, D67X, S68X, T69X, K70X, W71X, R72X, K73X, L74X, V75X, D76X, F77X, R78X, E79X, L80X, N81X, K82X, R83X, T84X, Q85X, D86X, F87X, W88X, E89X, V90X, Q91X, L92X, G93X, I94X, P95X, H96X, P97X, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, D121Y, K122E, T139K, S162A, D177E, V179A, D186DE, G196Q, T200I, R206RS, Q207E, R211K, F214L, K219X, L228X  
NLHG-105 NLHG-105 None None   V35T, E36AV, T39E, E40ED, I47IL, K122E, D123G, I135R, A158S, K173A, D177E, T200A, Q207E, R211K  
NLHG-107 NLHG-107 None None   E6D, V21VI, E28A, V35T, V60I, K103KE, D121DH, K122E, I135IT, K173X, Q174K, D177E, I178M, V179I, T200TA, I202IV, Q207X, R211S, F214FL  
NLHG-108 NLHG-108 None None   V35T, E40D, K49R, V60I, K104R, D121Y, K122E, T139TK, S162A, D177E, V179A, G196Q, T200I, Q207E, R211K, F214FL  
NLHG-110 NLHG-110 None None   K20KR, V21VD, V35T, T39A, E40D, I47IF, S48ST, E53EK, V60I, D86E, K104N, S105T, K122KE, I142LM, D177E, I178M, T200X, Q207X, R211K, K220KE K22K*, K30KN, I31IFL, L100A, G112GDE, Q174QP 
NLHG-111 NLHG-111 None None  K101KE E6D, V35T, T39X, K122KE, D123X, K173S, Q174K, V179I, Q207A  
NLHG-112 NLHG-112 None None   K20KR, V35T, T39TA, K43KR, S48AE, I50IV, V60I, K101KR, K103KE, K122E, D123NS, I135T, T165I, K173ST, Q174K, D177E, G196E, T200TA  
NLHG-113 NLHG-113 None None   V35T, E40ED, M41X, E42X, K43X, E44X, G45X, K46X, I47X, S48X, K49X, I50X, G51X, P52X, E53X, N54X, P55X, Y56X, N57X, T58X, P59X, V60X, F61X, A62X, I63X, K64X, K65X, K66X, D67X, S68X, T69X, K70X, W71X, R72X, K73X, L74X, V75X, D76X, F77X, R78X, E79X, L80X, N81X, K82X, R83X, T84X, Q85X, D86X, F87X, W88X, E89X, V90X, Q91X, L92X, G93X, I94X, P95X, H96X, P97X, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, I135T, K173A, Q174K, D177E, I178L, V179I, Q207A, R211S, F214L  
NLHG-114 NLHG-114 None None   K20KR, K32R, V35T, E53EK, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, T200A, I202V, Q207A, R211S  
NLHG-115 NLHG-115 None None   V35T, E40D, K43KR, I47IF, V60I, K64KR, K102KR, K103KE, D123E, T139K, G141GR, I142IV, T200A, Q207A, R211K K30KN, I31IFL, F130FI 
NLHG-116 NLHG-116 None None   E6A, K20R, V35T, E36A, T39E, S48T, V60I, K103KE, K122E, D123DN, A158S, K173T, Q174QK, T200TA, Q207E, F214V  
NLHG-117 NLHG-117 None None   V35T, T39A, S48T, V60I, S68SG, D121H, K122E, D123E, I135T, K173S, Q174K, D177E, V179I, T200TA, Q207AT, R211S  
NLHG-118 NLHG-118 None None   V35T, T39A, E40D, K49KR, V60I, K64R, K101X, K102X, K103X, K104X, D121Y, K122E, I135T, D177E, I178L, V179I, G196E, Q207E, R211K  
NLHG-119 NLHG-119 None None   V35T, V60I, K122E, D123S, I135T, S162H, K173S, Q174K, D177E, V179I  
NLHG-121 NLHG-121 None None   V35T, V60I, K103E, D121H, K122E, E169D, D177E, I178L, V179VI, T200R, E204ED, Q207EG, R211K L100LP 
NLHG-122 NLHG-122 None None   K11T, V21D, K22*, V35T, T39R, K43E, E53EK, P55X, Y56X, N57X, T58X, P59X, V60X, F61X, A62X, I63X, K64X, K65X, K66X, D67X, S68X, T69X, K70X, W71X, R72X, K73X, L74X, V75X, D76X, F77X, R78X, E79X, L80X, N81X, K82X, R83X, T84X, Q85X, D86X, F87X, W88X, E89X, V90X, Q91X, L92X, G93X, I94X, P95X, H96X, P97X, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, S117P, D121Y, K122E, R125X, S162N, D177E, T200I, Q207E, R211RK, K220KR  
NLHG-126 NLHG-126 None None  K103DN K20R, V21I, V35T, T39R, V60I, K122E, D123G, K173T, Q174K, D177E, V179I, T200A, I202V  
NLHG-127 NLHG-127 None None   E28X, E29X, K30X, I31X, K32X, A33X, L34X, V35X, E36X, I37X, C38X, T39X, E40X, M41X, E42X, K43X, E44X, G45X, K46X, I47X, S48X, K49X, I50X, G51X, P52X, E53X, N54X, P55X, Y56X, N57X, T58X, P59X, V60X, F61X, A62X, I63X, K64X, K65X, K66X, D67X, S68X, T69X, K70X, W71X, R72X, K73X, L74X, V75X, D76X, F77X, R78X, E79X, L80X, N81X, K82X, R83X, T84X, Q85X, D86X, F87X, W88X, E89X, V90X, Q91X, L92X, G93X, I94X, P95X, H96X, P97X, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, S117SP, D121H, K122E, I135T, I142AT, Q174EK, D177E, Q207E, R211K, F214FL R125RKQ, K219K* 
NLHG-128 NLHG-128 None None   V35T, E40D, S48ST, V60I, V90I, A98S, K102X, K103E, D121H, K122E, D177E, Q207E, R211K  
NLHG-129 NLHG-129 None None   E6ED, V35T, E36ED, T39TI, V60I, L100LF, K103KE, K122E, D123X, I135T, I142V, K173S, Q174K, D177E, V179I, T200A, Q207K, R211S, F214L  
NLHG-133 NLHG-133 None None   V35T, G45GR, K49KR, E53EK, V60I, A98S, K103KE, D121Y, K122E, D123E, I135T, D177E, I178V, V179I, T200M, Q207G, R211K  
NLHG-135 NLHG-135 None None   V35T, T39M, E40D, K49KR, V60I, K102KQ, K103KR, K122E, K173R, D177E, Q207E, R211K, F214L  
NLHG-149 NLHG-149 None None   V8I, K11T, E28EK, V35T, K49KR, K103KE, K122E, D123S, I135T, S162C, K173T, D177E, T200A, Q207E  
NLHG-150 NLHG-150 None None   P4T, V35T, G45GR, I50IF, V60I, K103KE, D121Y, K122E, D177E, I178M, Q207E, R211K K219K* 
NLHG-157 NLHG-157 None None  K103N V35T, E40D, K49R, E53D, V60I, D121H, T165I, D177E, I178L, T200R, Q207E, R211K  
NLHG-159 NLHG-159 None None M184V Y181V V35T, M41MI, E42EG, E44ED, G45X, K49R, V60I, A62X, K82KN, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, S117X, D121H, K122E, D123S, I135T, I142V, K173S, Q174K, V179I  
NLHG-162 NLHG-162 None None   V35T, T39K, K43R, V60I, K103KE, K122E, D123G, I135T, K173S, D177E, Q207A, R211K, F214L  
NLHG-163 NLHG-163 None None   I31X, V35T, T39R, K43X, K101Q, K103X, D121H, K122E, I135T  
NLHG-164 NLHG-164 None None   E29EG, K32KE, V35T, E44X, G45X, K46X, I47X, S48X, K49X, I50X, G51X, P52X, E53X, N54X, P55X, Y56X, N57X, T58X, P59X, V60X, F61X, A62X, I63X, K64X, K65X, K66X, D67X, S68X, T69X, K70X, W71X, R72X, K73X, L74X, V75X, D76X, F77X, R78X, E79X, L80X, N81X, K82X, R83X, T84X, Q85X, D86X, F87X, W88X, E89X, V90X, Q91X, L92X, G93X, I94X, P95X, H96X, P97X, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, K122E, D123N, T131P, I135V, I142V, K173A, Q174K, D177E, I178M, V179I, T200A G196GRW 
NLHG-169 NLHG-169 None None   I31X, V35T, T39I, E40D, K49R, V60I, K64KN, F87FL, L100F, K103X, K122E, D123NS, I135T, L149LP, K173A, Q174X, D177E, V179I, I202V G45GRW 
NLHG-170 NLHG-170 None None   V35T, E53EK, P55X, Y56X, N57X, T58X, P59X, V60X, F61X, A62X, I63X, K64X, K65X, K66X, D67X, S68X, T69X, K70X, W71X, R72X, K73X, L74X, V75X, D76X, F77X, R78X, E79X, L80X, N81X, K82X, R83X, T84X, Q85X, D86X, F87X, W88X, E89X, V90X, Q91X, L92X, G93X, I94X, P95X, H96X, P97X, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, S117X, K122E, D123G, I135T, K173S, Q174K, D177E, V179I, T200A, Q207D, R211K K219K* 
NLHG-172 NLHG-172 None None   K11T, V35T, E36ED, K43X, E44ED, E53EK, L100LF, K103E, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S  
NLHG-173 NLHG-173 None None   V35T, S48T, V60I, K102Q, K122E, D123N, I135T, I142T, K173L, Q174K, D177Q, V179I, T200A, Q207A  
NLHG-175 NLHG-175 None None K70E, M184V K103S, V106M E29EG, V35X, E36X, I37X, C38X, T39X, E40X, M41X, E42X, K43X, E44X, G45X, K46X, I47X, S48X, D121Y, K122E, T131TP, I135L, I159IL, K173T, D177E, T200A  
NLHG-72 NLHG-72 None None   E6D, V35T, T39I, K49KR, I50IV, V60I, K103E, K122E, D123S, D177E, I178M, Q207E, R211K  
NLHG-77 NLHG-77 None None D67DEV  V35T, E53EK, K103X, K122E, D123S, I135T, K166R, K173T, Q174K, D177E, V179I, Q207A, R211S, F227FY V60VIM 
NLHG-78 NLHG-78 None None   K11KE, V35T, K43KR, I50IFL, E53EK, V60I, K103KE, K104KR, D121H, K122E, D123S, K173A, Q174K, Q207A, R211S  
NLHG-79 NLHG-79 None None   V35T, E36A, T39E, S48T, P55X, Y56X, N57X, T58X, P59X, V60X, F61X, A62X, I63X, K64X, K65X, K66X, D67X, S68X, T69X, K70X, W71X, R72X, K73X, L74X, V75X, D76X, F77X, R78X, E79X, L80X, N81X, K82X, R83X, T84X, Q85X, D86X, F87X, W88X, E89X, V90X, Q91X, L92X, G93X, I94X, P95X, H96X, P97X, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, D121H, K122E, I135T, I142V, K173IT, T200A, Q207E N54NK 
NLHG-80 NLHG-80 None None  V106I V35T, K43KE, I47IF, S48ST, V60I, K122E, D177E, I178M, E204K, Q207E, F214L  
NLHG-82 NLHG-82 None None   V35T, T39M, E53EK, P55X, Y56X, N57X, T58X, P59X, V60X, F61X, A62X, I63X, K64X, K65X, K66X, D67X, S68X, T69X, K70X, W71X, R72X, K73X, L74X, V75X, D76X, F77X, R78X, E79X, L80X, N81X, K82X, R83X, T84X, Q85X, D86X, F87X, W88X, E89X, V90X, Q91X, L92X, G93X, I94X, P95X, H96X, P97X, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, D121H, K122E, I135T, T139L, K173A, Q174K, D177E, V179I, T200A, I202V, Q207A, R211S  
NLHG-83 NLHG-83 None None   P4H, V35T, S48T, V60I, K103R, D123E, I135T, T165IV, K173I, Q174K, D177E, V179I, I202V, Q207A, R211S, F214L  
NLHG-84 NLHG-84 None None  G190GE V8I, K22R, V35T, E40ED, K49KR, K103KE, D121DN, K122E, D123S, R125RK, T165I, D177E, V179VI, E194EK, T200I, Q207E, R211K  
NLHG-85 NLHG-85 None None   V35T, E40ED, K49R, K103KE, D121H, Q174R, D177E, Q207E, R211K K219K* 
NLHG-86 NLHG-86 None None   K20X, V21X, K22X, Q23X, W24X, P25X, L26X, T27X, E28X, E29X, K30X, I31X, K32X, A33X, L34X, V35X, E36X, I37X, C38X, T39X, E40X, M41X, E42X, K43X, E44X, G45X, K46X, I47X, S48X, K49X, I50X, G51X, P52X, E53X, N54X, P55X, Y56X, N57X, T58X, P59X, V60X, F61X, A62X, I63X, K64X, K65X, K66X, D67X, S68X, T69X, K70X, W71X, R72X, K73X, L74X, V75X, D76X, F77X, R78X, E79X, L80X, N81X, K82X, R83X, T84X, Q85X, D86X, F87X, W88X, E89X, V90X, Q91X, L92X, G93X, I94X, P95X, H96X, P97X, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, K122E, D123GS, I135T, D177E, V179I, T200A, Q207N, R211S, F214L, K219X G112GDE, K173*SY 
NLHG-87 NLHG-87 None None   K32R, V35A, E40D, V60I, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, D121H, K122E, I135T, K173S, Q174K, V179I, T200A, Q207AD, R211N T84I 
NLHG-88 NLHG-88 None None   V35T, E53EK, V60I, K103KE, K122E, D123S, I135T, S162C, K173S, Q174K, D177E, T200A, E203ED, Q207AD, R211X  
NLHG-89 NLHG-89 None None   P4PT, E29EG, V35T, I47X, S48ST, V60I, A98X, G99X, L100X, K101X, K102X, K103X, K104X, S105X, V106X, T107X, D121HY, K122E, I135T, K173A, Q174K, V179I, T200TA, Q207A, R211N  
NLHG-90 NLHG-90 None None   V35T, T39R, S48ST, K103E, K122E, D123G, I142IV, T165I, D177E, I178M, Q207A, R211S, F214FL  
NLHG-91 NLHG-91 None None  A98AG V35T, T39M, I47IF, K49KR, V60I, V90VI, K103X, K122E, R125X, S162X, D177E, I178M, T200I, Q207E, R211K, K220KR K30KN 
NLHG-92 NLHG-92 None None   I31IL, V35I, K46KE, K122A, D123X, Q174R, D177E, R211K  
NLHG-94 NLHG-94 None None  K101KE I5V, K20R, V35T, E44ED, G45GR, E53EK, V60I, D121Y, K122E, D123E, I135T, S162C, K173S, Q174K, D177E, V179I, G196E, Q207A, R211S, F214L  
NLHG-95 NLHG-95 None None   I5V, K11R, K20R, V21I, V35T, T39K, S48ST, K122E, D123N, I135T, K173S, Q174K, D177G, T200A, I202V, Q207A, R211S  
NLHG-96 NLHG-96 None None   E6D, V35T, S48E, I50IV, V60I, K103KE, D123X, I135T, T165I, K173S, Q174KR, D177E, V179I, I195IL, G196E, Q197QK, E203EK, Q207A, R211S, F214L  
NLHG-97 NLHG-97 None None   V35T, E40D, K49KR, V60I, K103E, K122E, D123S, K173A, D177E, T200I, Q207A  
NLHG-98 NLHG-98 None None   S117X, K122E, I135T, K173A, Q174K, D177E, V179I, V189I, Q207E, R211N D123V 
NLHG-99 NLHG-99 None None F77FL  K11T, V35T, E40D, V60I, K101KR, K102KQ, F116S, D121H, K122E, I135T, S162C, K173L, Q174K, D177E, I202IV, Q207A, R211S S105SP 

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