Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Li (2015)
Title Trends of HIV subtypes and phylogenetic dynamics among young men who have sex with men in China, 2009-2014.
Citation Sci Rep
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 1205
NumPts 1205
Subtype CRF01_AE, CRF07_BC, B, B + C, CRF55_01B, CRF68_01B, B + CRF01_AE, A, C, CRF67_01B, CRF08_BC, CRF06_cpx

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 1205 Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
BJ09SS001 BJ09SS001 None None   E6D, K11T, K32KQ, V35T, T39K, K43E, K122E, D123S, I135X, R172RK, K173R, Q174K, D177E, I178M, E203D, Q207A, R211S, K238R, V245K, V276VI, T286A, E291D, I293V  
BJ09SS004 BJ09SS004 None None   E28K, K32E, V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, E204K, V245Q, E248V, K249Q, A272P, K277R, E291D, V292I, I293V  
BJ09SS027 BJ09SS027 None None   I5V, E6D, K11T, V35T, T39R, K43E, K122E, D123S, I135T, S162C, K173S, Q174K, D177E, I178M, I202V, Q207A, R211S, K238R, V245E, K249KR, A272P, E291D, I293V  
BJ09SS041 BJ09SS041 None None   E6D, K11T, V35T, T39K, K43E, K122KE, D123N, S162C, K173R, Q174K, D177E, I178M, E203D, Q207A, R211S, K238R, V245E, T286A, E291D, V292I, I293V  
BJ09SS062 BJ09SS062 None None  V106I T39A, K49R, D121H, K122E, I135IT, K166KR, E169D, D177E, I178L, I202V, R211K, F214L, E224D, V245M, V261I, K277R, T286A, A288S, I293V, E297H M164MT 
BJ10S0010 BJ10S0010 None None   E6D, K11T, V35T, T39K, K43E, K49R, K122E, D123S, I135T, S162C, D177E, I178M, Q207A, R211S, K238R, V245E, V276I, T286A, E291D, I293V  
BJ10S0051 BJ10S0051 None None   V35T, T39K, K43E, K122E, D123S, S162C, K173R, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R, V245E, T286A, E291D, V292I, I293V  
BJ10S0059 BJ10S0059 None None   E6D, V35T, T39R, K43E, K122E, D123S, S162C, K173S, Q174K, D177E, I178M, E203D, Q207A, K238R, V245E, I293V, P294T  
BJ11S0018 BJ11S0018 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, K104KR, D121Y, K122E, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
BJ11S0054 BJ11S0054 None None   V60I, I135T, T165I, D177E, R211K, F214L, A272P, T286A, V292I, E297K  
BJ12S0009 BJ12S0009 None None   E6D, K11T, V35T, E36A, S48T, V60I, D121Y, K122E, K238R, V245E, V276I, E291D, V292I, I293V, T296S  
BJ12S0018 BJ12S0018 None None   V8VI, K11KR, K20KR, E28K, K32E, V35T, E36A, T39D, S48T, V60I, K122E, D123N, V245Q, E248V, K249Q, A272P, K277R, E291D, V292I, I293V  
BJ12S0043 BJ12S0043 None None   E6N, K11T, V35T, T39R, K43E, K122E, D123S, S162C, D177E, I178M, I195L, E203D, Q207A, R211S, K238R, V245E, A272P, E291D, I293V  
BJ12S0045 BJ12S0045 None None   E6D, K11T, V35T, T39R, K43E, K122E, D123S, S162C, D177E, I178M, E203D, Q207A, R211S, K238R, V245E, A272P, V276VI, K281R, T286A, E291D, I293V  
BJ12S0050 BJ12S0050 None None L210LW  E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T200A, Q207QH, V245Q, E248V, K249Q, A272P, K277R, E291D, V292I, I293V  
BJ13S0268 BJ13S0268 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, Q197H, V245Q, E248V, K249Q  
BJ13S0549 BJ13S0549 None None   E6D, K11T, K32KR, V35T, T39K, K43E, K49R, K64KR, K122E, D123S, I135T, S162C, D177E, T200TI, Q207A, R211S, K238R, V245E  
BJ13S0738 BJ13S0738 None None   I5IV, V118I, K122E, I135M, S162A, R211RK, F214L, V245L  
BJ13S0767 BJ13S0767 None None  H221Y E6D, K11T, V35T, T39R, K43E, V60I, S68G, K122E, D123NS, I135T, S162C, D177E, I178M, E203D, Q207A, R211S, V245E  
BJ13S0895 BJ13S0895 None None   E6D, K11T, V35T, T39K, V118I, K122E, D123S, I135T, K173L, Q174K, D177E, T200R, Q207A, R211S, F214L, K238R, V245D  
BJ14S0001 BJ14S0001 None None   E6D, K11T, K20R, K32KE, V35T, T39K, K122E, D123N, S162C, K173R, Q174K, D177E, I178M, E203D, Q207A, R211S, K238R, V245K, K281R, T286A, E291D, I293V  
BJ14S0034 BJ14S0034 None None   P14S, E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, K166R, T200I, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
BJ14S0040 BJ14S0040 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, R206RK, V245Q, D250E, A272P, K277R, T286A, E291D, V292I, I293V  
BJ14S0044 BJ14S0044 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T139TA, V245Q, E248V, K249Q, A272P, K277R, E291D, V292I, I293V  
BJ14S0061 BJ14S0061 None None   P4H, E6N, K11T, V35T, T39K, K43E, V118I, K122E, D123S, I135T, K173I, Q174K, D177E, T200R, Q207A, R211S, F214L, K238R, V245K, T286A, E291D, V292I, I293V  
BJ14S0067 BJ14S0067 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, V245Q, E248V, K249Q, A272P, K277R, E291D, V292I, I293V  
BJ14S0084 BJ14S0084 None None   V35I, V118I, K122E, K173N, F214L, V245M, I257L, V261I, I293V  
BJ14S0121 BJ14S0121 None None   E6D, K11T, V35T, T39K, K43E, D123S, S162C, Q174E, D177E, V179I, E204K, Q207A, R211S, V245E, S251N, K275R, V276I, T286A, A288S, E291D, V292I, I293V  
BJ14S0140 BJ14S0140 None None  V179E E6N, V35T, E36D, T39K, K43E, T69TS, K122E, D123S, I135R, I202V, R211K, F214L, V245A, A272P, T286A, E291D, V292I, I293V, P294S, E297A  
BJ14S0174 BJ14S0174 None None   E28K, K32E, V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I142V, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
CQ10S0020 CQ10S0020 None None   E6ED, E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S134SN, I135IMT, R211RK, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
CQ10S0059 CQ10S0059 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121HY, K122E, I135T, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
CQ11S0027 CQ11S0027 None None   E6D, K11T, V35T, T39K, K122E, D123S, I135V, S162C, Q174N, D177E, I178M, T200I, I202IV, Q207A, R211S, D237N, K238KR, V245E, K281R, T286A, E291D, V292I, I293V, P294PS  
CQ11S0045 CQ11S0045 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
CQ12S0014 CQ12S0014 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121HY, K122E, R211RK, D237DN, V245Q, E248V, K249Q, D250DE, A272P, K277R, T286A, E291D, V292I, I293V  
CQ12S0053 CQ12S0053 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, F77S, D121Y, K122E, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
DH11S0108 DH11S0108 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, S162C, K173R, Q174K, D177E, I178M, T200A, Q207A, R211S, K238R, V245E, E291D, V292I, I293V  
GX11S0093 GX11S0093 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121H, K122E, E169D, V245Q, E248V, K249Q, A272P, K277R, E291D, V292I, I293V  
GX14S0004 GX14S0004 None None  V179E V35T, T39K, K43E, K122E, D123S, I135R, R211K, F214L, V245A  
GX14S0017 GX14S0017 None None   E6D, V35T, T39K, K43E, K49R, K122E, D123S, R125RK, S134SG, S162C, Q174R, D177E, I178M, E203D, Q207A, R211S, K238R, V245E Y127YN 
GX14S0027 GX14S0027 None None  V179E E29EK, V35T, T39K, K43E, K122E, D123S, T131TP, I135R, R211K, F214L, V245A, E248EK H96HP 
GZ09S0009 GZ09S0009 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, K102R, K104R, D121Y, K122E, L210S, V245Q, E248V, K249Q, A272P, K277R, T286A, E291ED, V292I, I293V, P294PS  
GZ09S0017 GZ09S0017 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T200I, V245Q, E248V, K249Q, A272P, K277R, E291D, V292I, I293V  
GZ11S0016 GZ11S0016 None None   E6N, V35T, T39R, K43E, K122E, D123S, I142V, S162C, D177E, I178M, E203D, Q207A, R211S, K238R, V245E, A272P, V276I, I293V  
GZ11S0019 GZ11S0019 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T200I, V245Q, E248I, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
GZ11S0038 GZ11S0038 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, V245Q, E248V, A272P, V276I, K277R, T286A, E291D, V292I, I293V  
GZ11S0044 GZ11S0044 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121HY, K122E, V245Q, E248V, K249Q, A272P, K277R, T286V, E291D, V292I, I293V  
GZ11S0048 GZ11S0048 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121DY, K122E, I135X, R172RK, Q174QK, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
GZ11S0052 GZ11S0052 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, V245Q, E248V, K249Q, A272P, K277R, T286V, E291D, V292I, I293V  
GZ14S0042 GZ14S0042 None None   T27S, E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121H, K122E, D123E, E169D, P176PS, Q207E, R211K, V245Q, E248V, K249Q  
GZ14S0048 GZ14S0048 None None   E6D, K11T, K20KR, V35IT, D123N, I142IV, K173I, Q174K, D177E, I178L, T200I, Q207A, R211S, F214L, K238KR, V245E  
HA11S0014 HA11S0014 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, S162C, K173R, Q174K, D177E, I178M, E203D, Q207A, R211S, K238R, V245KQ  
HN11S0004 HN11S0004 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, I135T, S162C, K173R, Q174K, D177E, I178M, V179I, Q207A, R211S, K238R, V245E, K275R, T286A, E291D, V292I, I293V  
HN12S0017 HN12S0017 None None  V179E E6D, V35T, T39K, K43E, K122E, D123S, I135R, I202IV, R211K, F214L, V245A, K275KQ, K281R, T286A, E291D, V292I, I293V  
HN12S0018 HN12S0018 None None   E6DN, V35T, T39K, K43E, S105A, K122E, D123S, K173R, Q174K, D177E, I178M, V179I, Q207A, R211S, K238R, V245E, T286A, I293V  
HN12S0020 HN12S0020 None None   E6D, V8I, K11KT, V35T, T39DE, K104KR, K122E, D123N, I135V, K166R, K173I, Q174K, D177E, I178M, T200TA, E203D, Q207AD, R211KN, K238R, V245E, K275R, K277R, E291D, I293V, E297A  
HN12S0045 HN12S0045 None None   E6D, K11T, V35T, T39K, K43E, K102KR, K122E, D123GS, K173L, Q174K, D177E, Q207A, R211S, K238KR, V245E, K275R, V276I, E291D, V292I, I293V F61FL 
HN13S0023 HN13S0023 None None T215S  V35T, T39R, K43E, K122E, D123S, I135V, S162C, K173D, Q174K, D177E, I178M, T200A, E203D, Q207A, R211S, K238R, I244V, V245K  
HN13S0028 HN13S0028 None None   K11KT, E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, K166KR, V245Q, K249Q  
HN13S0042 HN13S0042 None None  V179E E6D, V35T, T39K, K43E, K122E, D123S, I135R, R211K, F214L, V245E, E248X  
HN14S0001 HN14S0001 None None   E6D, K11T, V35IT, T39K, K43E, S68G, T107S, G112GA, K122E, D123S, K166R, K173I, Q174K, D177E, V179VI, T200I, Q207A, I244V, V245E  
HN14S0007 HN14S0007 None None   K20R, K104R, K122E, D123S, K166R, T200I, R211K, F214L L209LM 
HN14S0018 HN14S0018 None None  V179E E6D, V35T, E36ED, T39K, K43E, K122E, D123S, I135R, I202IV, R211RK, F214L, V245E  
HN14S0026 HN14S0026 None None   E6D, K11T, V35AT, T39R, K43E, K122E, D123N, S162C, K173S, Q174K, D177E, I178M, T200TI, E203EK, Q207A, R211S, K238R, V245A  
HN14S0040 HN14S0040 None None   E28K, K32E, V35T, E36A, T39E, S48T, V60I, K102KR, D121Y, K122E, K166R, V245Q, E248V, K249Q  
HN14S0043 HN14S0043 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, W88S, K102R, K103R, D121Y, K122E, I135IT, D177E, R211K, F214L, V245Q, E248V, K249Q  
HN14S0056 HN14S0056 None None  V179E E6D, V35T, T39K, K43E, K122E, D123S, I135R, R211K, F214L, V245E  
HN14S0079 HN14S0079 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, I135T, K173I, Q174K, D177E, T200I, Q207A, R211S, F214L, K238R, V245E  
JS09S8322 JS09S8322 None None   P4PH, E6D, K11T, V35T, T39K, K43E, S105A, K122E, D123S, K173R, Q174K, D177E, I178M, V179I, T200A, Q207A, R211S, K238R, V245E, T286A  
JS09S8364 JS09S8364 None None   E6D, V35T, T39R, K43E, V60I, K104KR, K122E, D123S, S162C, D177E, I178M, V189I, Q207A, L210F, R211S, K238R, V245E, K249R, T286A, E291D  
JS10S0052 JS10S0052 None None   E6N, K11KT, V21VI, V35T, T39K, K43E, K122E, D123S, S162C, E169ED, K173R, Q174KR, D177E, I178M, Q207T, R211S  
JS11S0005 JS11S0005 None None   I5V, V35T, T39K, K43E, K122E, D123S, I135RT, S162C, F171Y, K173R, Q174K, D177E, I178M, T200A, Q207A, R211S, K238R, V245E, T286A, E291D, V292I, I293V  
JS11S0011 JS11S0011 None None   E6D, K11T, V35T, T39K, K43E, K102R, K104R, S105A, K122E, D123S, S162C, K173R, Q174K, D177E, I178M, T200I, Q207A, R211S, V245E, A272PS, K275R, T286AV, E291D, V292I, I293V  
JS11S0043 JS11S0043 None None   E6D, K122E, D123S, I135T, T200I, R211K, K238R, V245E, A272P, K281R, I293V  
JS11S0046 JS11S0046 None None   E6D, K11T, V35T, T39K, K43KE, D121DAE, K122E, D123S, I135V, S162C, K173KR, Q174QE, D177E, V179I, Q207A, R211S, K238R, V245E, S251ST, K275R, V276I, T286A, E291D, V292I, I293V  
SC13S0006 SC13S0006 None None   K20R, E28K, K32E, V35T, E36A, T39E, S48T, V60I, D121Y, K122E, P243PS, V245Q, E248V, K249Q  
SC13S0033 SC13S0033 None None   E28K, K32E, V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135T, V245Q, E248V, K249Q  
SC13S0042 SC13S0042 None None   E28K, K32E, V35T, E36A, S48T, V60I, D121Y, K122E, S162C, E203KQ, V245Q, E248V, K249Q  
SC13S0059 SC13S0059 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, I167V, E203G, V245Q, E248V, K249Q  
SD09S0119 SD09S0119 None None   P4PS, E6D, V35I, I135L, S162C, G196E, E248V, A272P, A288G, I293V, E297A  
SD10S0009 SD10S0009 None None  K101KE E6D, V35T, T39K, K43E, K49KR, K122E, D123S, I135R, S162C, K173R, Q174K, D177E, I178M, I195L, T200I, R206RK, Q207A, R211S, K238R, V245E, K275KQ, V276VI, K277KQR, K281KR, T286A, I293V, E297A  
SD10S0048 SD10S0048 None None   E6X, K11T, V35T, T39K, K43E, K122E, D123S, I135T, S162C, D177E, I178M, E203ED, Q207A, R211S, F214FL, K238R, V245E, K249KR, T286A, E291D, I293V  
SD11S0049 SD11S0049 None None   E6D, K11T, V35T, T39K, K43E, K49R, K122E, D123S, S162C, K173R, Q174K, D177E, I178M, V179I, Q207T, R211S, K238R, V245E, K275KQ, V276VI, K277KR, K281R, T286A, E291D, V292I, I293V  
SD11S0054 SD11S0054 None None   E28K, K32E, V35T, E36A, S48T, V60I, T69I, D121Y, K122E, E204EG, V245Q, E248V, K249Q, I257IV, A272P, K277R, E291D, V292I, I293V  
SZ09S0106 SZ09S0106 None None   E6D, V35T, T39K, K43E, K122E, D123S, I135T, K173I, Q174K, D177E, T200I, Q207A, R211S, F214L, K238R, V245E, V276I  
SZ11S0047 SZ11S0047 None None   E6D, K11T, V35T, T39R, K43E, K122E, D123S, S162SC, D177E, I178M, T200I, E203D, E204K, Q207A, R211S, K238R, V245E, V276I, T286A, E291D, I293V  
SZ12S0012 SZ12S0012 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, V241VI, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V H96HR 
SZ12S0051 SZ12S0051 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
XJ14S0015 XJ14S0015 None None  V106I V118I, K122E, I135R, Q207H, R211K, F214L, I244V, V245M  
YN14S0025 YN14S0025 None None  E138G E28K, K32E, V35T, E36A, T39D, S48T, V60I, R83RK, D121Y, K122E, I135V, K166R, R211K, V245Q, E248V, K249Q  
ZJ09S1048 ZJ09S1048 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, K173I, Q174K, D177E, V179I, T200I, Q207A, R211S, K238R, V245E, T286A, E291D, V292I, I293V, E297K  
ZJ09S1053 ZJ09S1053 None None   E6D, V35T, T39R, K43E, K122E, D123S, S162C, D177E, I178M, V179I, V189I, Q207A, L210F, R211S, K238R, V245E, K249R, T286A, E291D, I293V  
ZJ09S1060 ZJ09S1060 None None   K13R, V35T, T39K, K43E, K122E, D123S, S162C, P170S, K173R, Q174K, D177E, I178M, Q207A, R211S, K238R, V245E, A272P, K275R, E291D, V292I, I293V  
ZJ10S0015 ZJ10S0015 None None   E6D, V35T, T39K, K43E, K122E, D123N, I135R, S162C, K173KR, Q174N, D177E, I178IM, V179VI, Q207K, R211S, K238R, V245E, K275R, T286TA, E291D, V292I, I293V  
ZJ10S0059 ZJ10S0059 None None   E6D, K11T, V21VI, V35T, T39K, K43E, K122E, D123S, K173I, Q174K, D177E, I178MV, T200I, Q207A, R211S, K238KR, V245E, T286A, E291D, V292I, I293V  
ZJ12S0002 ZJ12S0002 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, K102Q, D121H, K122E, K166KR, V245Q, E248V, K249Q, A272P, K277R, E291D, V292I, I293V  
ZJ12S0042 ZJ12S0042 None None  V179D E6D, K11T, V35T, T39K, K43E, S68G, K122KE, D123N, S162C, K173R, Q174QKR, D177E, I178M, T200TI, E203ED, Q207A, L210LM, R211S, K238KR, V245E, A272AG, K281KR, T286A, V292I, I293V  
ZJ12S0044 ZJ12S0044 None None   E28K, K32E, V35T, E36A, T39E, S48T, V60I, D121Y, K122E, D177N, V245Q, E248V, K249Q, A272P, K277R, E291D, V292I, I293V  
ZJ13S0254 ZJ13S0254 None None   E28K, K32E, V35T, E36A, T39E, S48T, V60I, K102R, K104R, D121Y, K122E, K173R, Q197K, V245Q, E248V, K249Q  
ZJ13S0609 ZJ13S0609 None None   E28R, K32E, V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135T, I244IV, V245Q, E248IV, K249Q  

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