Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Billings (2016)
Title The number and complexity of pure and recombinant HIV-1 strains observed within incident infections during the HIV and malaria cohort study conducted in Kericho, Kenya, from 2003 to 2006.
Citation PLoS ONE
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 58
NumPts 58
Subtype A, D, C, J, G, CRF10_CD

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
KE149896V6 KE149896V6 None    K14R, N27H, V31I, I72V, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, L234I, S283G  
KE161801V6 KE161801V6 None    E11D, K14R, D25E, V31I, L45I, I72V, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, S283G, D286N  
KE169579V3 KE169579V3 None    K14R, V31I, I60M, T112V, I113V, S119T, T124A, T125A, V126F, G134N, K136Q, V201I, Q216H, D279G, S283G  
KE176519V4 KE176519V4 None    K14R, V31I, S39C, M50I, I72V, L101I, T112V, I113V, T124A, T125A, K136H, D167E, Q216N, I268L, S283G  
KE185405V4 KE185405V4 None    K14R, V31I, I72V, T112V, I113V, T124A, T125A, K136Q, K160R, D167E, V201I, I203M, S283G  
KE196199V6 KE196199V6 None    K7R, K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, V126F, I135V, D167E, K188R, V201I, T206S, T218S, K219N, I220L, N222K, L234I, I268L, S283G G134Q 
KE215154V4 KE215154V4 None    K14R, V31I, I60V, I72V, T112V, I113A, T124G, T125A, V126F, G134N, I135V, K136Q, G163A, V201I, L234I, S255N, D278N, S283G L68P 
KE263806V2 KE263806V2 None    K14R, A21T, I72V, L101I, T112V, I113V, T124A, T125A, G134N, K136Q, D167E, I208L, Q216H, S283G  
KE275457V6 KE275457V6 None    K14R, V31I, A33T, E69K, L101I, G106A, T112V, T125V, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
KE295198V5 KE295198V5 None   T97A V31I, I60M, K111T, T112V, I113V, T124A, T125A, V126F, K136Q, V165I, D167E, V201I, K211R, T218I, Q221T, L234I, D256E, S283G  
KE335214V6 KE335214V6 None    K14R, I72V, Y99F, L101I, T112V, T124G, T125A, I135V, K173R, F181L, V201I, K211T, T218I, L234I, R269K, D270H  
KE344827V3 KE344827V3 None    E10A, E11D, S17N, D25E, V31I, M50I, S57G, I60V, I72V, I84M, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, T218I, L234I, S255G, A265V, R269K, D278A, S283G V250A 
KE354207V3 KE354207V3 None    K14R, V31I, I60M, I72V, K111R, T112V, I113V, T124A, T125A, V126F, A133T, G134N, I135V, K136Q, D167E, V201I, S283G  
KE369195V4 KE369195V4 None    E11D, S24N, D25E, V31I, M50I, F100Y, L101I, T112V, T124S, T125A, K136H, V201I, K215N, T218L, L234I, V260I, K273Q, D278A, S283G  
KE376579V4 KE376579V4 None    K14R, V31I, I72V, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, I220V  
KE378531V2 KE378531V2 None   T97A K14R, A21T, K34R, M50I, T112V, I113V, T124A, T125A, V126F, G134S, I135V, D167E, V201I, K211R, N222K, L234I, A265V, S283G, R284G  
KE389016V3 KE389016V3 None    S24H, V31I, G59R, I72V, L101I, T112V, S119P, T122I, T124A, T125S, K136Q, K160R, V201I, K215R, L234I, A265V, S283G  
KE398838V4 KE398838V4 None    K14R, S24H, V31I, I72V, L74M, Q95H, T112V, S119P, T122I, T125P, I135V, F181L, V201I, K211Q, K215R, T218I, L234V, D256E, S283G  
KE404877V7 KE404877V7 None    E11D, K14R, V31I, I72V, Q95H, E96D, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, I268L, S283G  
KE406723V2 KE406723V2 None    K14R, V31I, I60M, T97S, T112V, I113V, T124A, T125A, V126F, K136N, D167E, S195T, V201I, I203M, K211R, T218I, L234I, S255N, I268L, D270H, S283G  
KE414659V2 KE414659V2 None    K14R, A21T, I72V, T112V, I113V, T124A, T125A, K136Q, D167E, H171HR, S283G, D286N  
KE452693V6 KE452693V6 None    K14R, V31I, T112I, I113V, T124A, T125A, K136Q, H171Q, V201I, S283G  
KE484390V7 KE484390V7 None    L63V, I72V, L74I, A91E, T112V, I113V, S119R, V201I, T218I, L234I, D256E, A265V, S283G  
KE489686V2 KE489686V2 None    S17N, M50L, T112V, I113V, T124A, T125A, V201I, L234I, S283G  
KE493170V5 KE493170V5 None    S24H, K34R, M50I, I72V, L101V, K103R, T112V, S119P, T124A, T125A, K136Q, K160R, V201I, K215R, L234I, S255N, S283G D207V_YTIATD 
KE520997V4 KE520997V4 None    K34R, I60M, I72V, T112V, I113V, S119P, T122I, T124A, T125A, V126F, G134N, K136Q, D167E, V201I, L234I, K273R, S283G  
KE530245V4 KE530245V4 None    E11D, K14R, A21T, V31I, Q95S, L101I, T112V, I113V, T124A, T125A, G134N, K136Q, V201I, I208L, Q216H, T218S, D256E, S283G  
KE543869V2 KE543869V2 None   E157Q E10K, S17N, M50L, I72V, L101I, T112V, I113V, T124G, T125A, K160Q, F181L, V201I, K211R, T218I, L234I, A265V, I268L  
KE556528V2 KE556528V2 None    E11D, V37I, M50L, I72V, L101I, T112V, I113V, T124N, T125V, G134N, V165I, K173R, V201I, I220T, S283G  
KE585573V2 KE585573V2 None    K14R, D25E, V31I, L101I, T112I, T124A, T125A, K136Q, Q177L, V201I, T206S, K211Q, Q216R, T218I, K219Q, L234I, A265V, R269K, D270E, D278A, S283G  
KE607907V4 KE607907V4 None    E11D, K14R, S17T, V31I, S39C, M50I, I72V, L101I, T112V, T124G, T125A, K136Q, D167E, V201I, Q216H, S283G  
KE613437V4 KE613437V4 None    S17N, M50L, I72V, E87K, L101I, T112V, I113V, K156N, D167E, K173R, V201I, K211R, E212A, K219N, N222K, L234I, S283G  
KE629642V3 KE629642V3 None    D3N, K14R, A21T, V31I, V32I, A33T, I60M, I72V, T112V, T124A, G134N, K136Q, E138D, E157K, D167E, V201I, I208M, K240R, S283G  
KE643439V4 KE643439V4 None    R20K, V31I, I72V, T112V, I113V, T124A, T125A, V126F, I135V, K136Q, D167E, V201I, Q216H, N222K, L234I, S283G  
KE649309V2 KE649309V2 None    E10A, K14R, V31I, I72V, L101I, T112V, I113V, S119G, T124A, T125V, K136Q, D167E, K173R, V201I, L234I, A265V, S283G  
KE661996V6 KE661996V6 None    K14R, V31I, M50I, I72V, A91T, I113V, T124A, T125A, K136Q, D167E, V201I, S283G  
KE663257V3 KE663257V3 None   T97A E11D, K14R, A21T, V31I, I60M, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, G193E, V201I, T218L, L234I, D278A, V281M, S283G  
KE688699V6 KE688699V6 None    S17N, I60V, I72V, T112V, I113V, T124N, K188R, I200M, V201I, L234I, I268L, R269K, D278A  
KE719832V2 KE719832V2 None    S17N, R20K, L45Q, I72V, L101I, T112I, I113V, T124N, T125A, K136Q, D167E, V201I, L234I, D256E  
KE725124V4 KE725124V4 None    K14R, S24H, V31I, L45Q, I72V, A98G, L101I, T112V, S119P, T122I, T124A, T125P, I135V, K136Q, E157H, K160T, V165I, V201I, K211R, K215R, L234I, S283G, D288N  
KE726081V5 KE726081V5 None    K14R, V31I, S39C, I72V, T112V, I113V, T124G, T125A, K136Q, D167E, V201I, Q216H, L234I, S283G  
KE757760V5 KE757760V5 None    K14R, S24N, V31I, I60L, L101I, K111R, T112V, T124N, K136Q, D167E, V201I, K211R, L234I, A265V, D278A, R284G, D288N  
KE780221V3 KE780221V3 None    K14R, V31I, I60M, L63I, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, V201I, A265V, S283G, D288N  
KE795643V7 KE795643V7 None    K14R, A21T, V31I, S39N, D41N, I72V, L74I, T112V, I113V, T124A, T125A, G134N, K136Q, I141V, D167E, V201I, Q216N, L234V, V260I, I268L, R269K, D270N, S283G, D286N  
KE809646V6 KE809646V6 None    K14R, D25E, V31I, V54L, I72V, T112V, I113V, T124A, T125A, D167E, V201I, T206S, L234V, D256E, S283G  
KE809842V2 KE809842V2 None    K14R, V31I, I72V, L74V, T112V, T124N, T125A, K136Q, D167E, V201I, T218I, S255N, I268L  
KE830543V3 KE830543V3 None    K7R, S17N, V31I, V54I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, L172I, V201I, K211R, Q214E, T218I, L234I, Q252R, S283G, D286N  
KE851891V4 KE851891V4 None    K14R, A21T, V31I, S39N, I72V, L74I, T112V, I113V, T124A, T125A, G134N, K136Q, I141V, D167E, K188R, V201I, Q216N, L234V, V260I, I268L, R269K, D270N, S283G, D286N  
KE860822V3 KE860822V3 None   E157Q K14R, S39C, I60M, I72V, T112V, I113V, T124A, T125A, V126F, K136Q, K160Q, D167E, G193E, V201I, T218S, Y227F, N254K, S255K, S283G  
KE870929V2 KE870929V2 None    D25E, L45I, M50T, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, D278T, S283G  
KE880505V2 KE880505V2 None    S17N, I72V, L101I, T112V, T124A, T125A, A129S, K136Q, D167E, V201I, I268L, S283G  
KE884468V5 KE884468V5 None    E11D, K14R, V31I, V32I, I72V, L101I, T112V, I113V, T124A, T125A, G134D, K136Q, G163T, D167E, V201I, T206S, I208L, E212A, S283G  
KE888800V3 KE888800V3 None    S17N, D41N, I72V, L74I, T112V, I113V, T124A, T125A, G134D, K136Q, M154L, D167E, K173R, V201I, L234V, D256E  
KE894822V7 KE894822V7 None    D6E, K14R, L45Q, I72V, T112V, I113V, T124A, T125A, V126F, G134S, I135V, Q137L, D167E, V201I, K211R, L234I, S283G  
KE897156V5 KE897156V5 None   T97A, G163R S17N, L101I, T112V, I113V, T124A, K156H, V165I, K188R, V201I, S255N, I268L, V281M, S283G  
KE956490V3 KE956490V3 None   T97A S17N, N27G, P30H, M50L, L74I, L101I, T112V, I113V, T124A, T125A, G134D, K188R, V201I, N222K, L234I, D256E, I268L, S283G  
KE961896V5 KE961896V5 None    K14R, S17N, M50L, L101I, T112V, S119P, T122I, T124A, T125S, I135V, K136Q, V165I, F185Y, V201I, T206S, K215R, I220V, L234I  
KE963379V4 KE963379V4 None    S17N, V31I, S39C, M50I, I72V, L101I, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, L234I, A265V, S283G, R284G, D288N  

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