Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Neogi (2014)
Title Temporal trends in the Swedish HIV-1 epidemic: increase in non-B subtypes and recombinant forms over three decades.
Citation PLoS ONE
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 256
NumPts 256
Subtype B, CRF01_AE, C, A, CRF02_AG, D, G, F, CRF35_AD, B + F, CRF05_DF, CRF49_cpx

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 256 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
SE_10 SE_10 None    T12N, L19I, E35D, N37S, I64V, I93IL  
SE_100 SE_100 None    I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K  
SE_101 SE_101 None    G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L  
SE_102 SE_102 None    T12A, N37S, L38LI, R41K, I62V, L63LP, V77VI, I93L  
SE_103 SE_103 None    T12S, I15V, L19I, K20R, M36I, N37S, R41K, H69K, V77I, L89M, I93L  
SE_104 SE_104 None    T12P, G17E, L19I, M36I, L63P, I93L  
SE_105 SE_105 None    I13V, M36I, R41K, H69K, L89M  
SE_107 SE_107 None    I13V, K20KR, L33V, R41K, I64V, I72IV  
SE_109 SE_109 None    I15V, G16E, M36I, R41K, Q61K, H69K, L89M, I93L  
SE_11 SE_11 None    R41K, I62V, L63P, I66IL, I93L  
SE_110 SE_110 None    I13V, E35D, M36I, R41K, I62IV, L63PS, H69K, T74TS, L89M  
SE_111 SE_111 None    K14R, E35D, M36I, R41K, L63A, H69K, L89M  
SE_114 SE_114 None    E35D, N37E, L63P  
SE_115 SE_115 None    I13V, K20I, E35K, M36I, N37E, R41K, H69K, L89M  
SE_116 SE_116 None    L19I, M36I, R41K, L63T, H69K, L89M, I93L  
SE_118 SE_118 None    T12P, K14KR, L19I, Q61QE, I62V, L63PS, C67H, I72IV, V77I, I93L  
SE_119 SE_119 None    K14R, I15V, N37D, L63P, I93L  
SE_12 SE_12 None    I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K  
SE_121 SE_121 None    R57K, I62V, L63P, I93L  
SE_122 SE_122 None    L10I, I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69Q, V77I, L89M  
SE_123 SE_123 None    G16E, K20R, E35D, M36I, R41K, R57K, H69K, I72IV, L89M, Q92K  
SE_124 SE_124 None    I13V, G16A, E35D, M36I, R41K, H69K, K70KR, L89M  
SE_125 SE_125 None    I13V, K14R, K20I, E35G, M36I, P39S, R41K, H69K, T74S, V82I, L89M, I93L  
SE_126 SE_126 None    I13V, M36I, K43R, R57K, I62V, L63P, I64M, A71V, I93L  
SE_128 SE_128 None    L10I, R41K, I93L  
SE_129 SE_129 None    K14R, I15V, G16E, E35D, R41K, I93L  
SE_13 SE_13 None    K14R, I64V  
SE_130 SE_130 None   L10LF V11VF, K14R, L19Q, N37H, D60E, I62V, L63I, I64V  
SE_132 SE_132 None    I13V, K14KR, I15V, E35D, M36I, R41K, H69K, L89M  
SE_133 SE_133 None    I15V, G16E, K20R, M36I, N37K, P39S, R41N, H69K, L89M, I93L  
SE_135 SE_135 None    T4N, I13V, K14R, L19P, K20I, E35D, M36I, R41K, H69K, L89M  
SE_136 SE_136 None    I13V, G16E, K20I, M36I, R41K, K43KR, I64L, H69K, K70R, L89M  
SE_137 SE_137 None    R41K, I62V, I93L  
SE_138 SE_138 None    T12A, M36I, R57K, I62V, L63P, I93L  
SE_14 SE_14 None    N37S, L63AS, I72T, V77I  
SE_140 SE_140 None    I13V, G16E, E35D, M36I, R41K, R57K, L63H, E65EK, H69K, L89M R87RQ, T96TI 
SE_143 SE_143 None    N37CS, I64V, I72T, V77I  
SE_15 SE_15 None    L10I, I13V, I15V, G16E, E35D, M36I, R41K, K45R, R57K, L63S, H69K, K70R, L89M  
SE_16 SE_16 None    L33V, N37S, P39S, R41K, K45R, D60E, L63P, I64V  
SE_17 SE_17 None    I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K  
SE_19 SE_19 None    T12S, I15V, G16GE, L19LI, M36I, R41K, L63S, H69K, L89M, I93L  
SE_21 SE_21 None    T12TK, G16E, E35D, M36I, N37D, R57K, I62V, L63T, E65D, I72T, T74TA, L89M  
SE_22 SE_22 None    I15IV, G16E, M36I, R41K, L63NS, H69K, I72T, I93L  
SE_25 SE_25 None    T12S, I15V, L19I, E35D, M36I, R41K, I62IV, L63V, H69K, T74S, L89M, I93IL  
SE_26 SE_26 None    T12S, M36I, R41K, K45R, L63P, H69K, L89M, I93L  
SE_28 SE_28 None    T12S, I15V, L19I, K20R, E35D, N37I, R41K, K45R, H69K, T74S, L89M, I93L L38C 
SE_29 SE_29 None    T12S, I15V, L19I, E35D, M36I, R41K, H69K, L89M  
SE_30 SE_30 None    R57K, I62V, L63P, I93L  
SE_31 SE_31 None    L10V, I15V, G16E, M36I, R41K, L63V, H69K, L89M, I93L  
SE_32 SE_32 None    I13V, K20R, E35D, M36I, R41K, K45R, R57K, H69K, L89M  
SE_34 SE_34 None    V11I, I13V, K14R, I15V, G16GE, K20R, E35D, M36I, R41K, R57K, L63T, H69K, L89M  
SE_35 SE_35 None    T12R, L19V, R41K, L63S, H69K, V77I, F99L  
SE_37 SE_37 None    I13V, K14R, K20I, E35Q, M36I, N37D, R41K, R57K, C67E, H69K, V82I, L89M  
SE_38 SE_38 None    I15V, G16E, M36I, R41K, H69K, L89M, I93L  
SE_40 SE_40 None    I15V, L63P  
SE_41 SE_41 None    R41K, I62V, L63S, I93L  
SE_42 SE_42 None    T12S, G16E, L19I, M36I, H69K, L89M, I93L  
SE_44 SE_44 None    T12P, L19I, L63A, I93L  
SE_45 SE_45 None    I13V, N37D, L63P, V77I, I93L  
SE_46 SE_46 None    I13V, L63P, I93L  
SE_48 SE_48 None    I13V, E35D, N37ND, L63P, I64V, K70R  
SE_49 SE_49 None    L10LI, M36I, N37S, Q61QH, I62IV, L63ST  
SE_5 SE_5 None    N37S, K45R, L63S, V77I, I93L  
SE_50 SE_50 None    L33V, E35D, N37Y, R41K, I62V, L63P, I64L, I93L  
SE_51 SE_51 None    I13V, K20R, E35D, M36I, R41RK, L63PS, H69K, K70R, V82VI, L89M, T91A, F99L  
SE_52 SE_52 None    I15V, E35D, M36I, I93L  
SE_53 SE_53 None    L10V, I13V, K14KR, I15V, E35D, M36I, N37D, R41K, H69K, K70KR, L89M  
SE_55 SE_55 None    I13V, N37C, I62V, L63P, I72M  
SE_56 SE_56 None    L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M, F99L  
SE_57 SE_57 None    L10IV, K14R, I15V, N37D, I93L  
SE_58 SE_58 None    I15V, G16E, E35D, R41K, I64V, I93L  
SE_59 SE_59 None    I13V, E35D, M36I, R41K, H69K, L89M  
SE_6 SE_6 None    I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K  
SE_60 SE_60 None    K14R, I15V, N37D, L63P, I93L  
SE_61 SE_61 None    E35D, N37D, R41K, L63P, A71T, I72T  
SE_62 SE_62 None    I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K  
SE_63 SE_63 None    R41K, I62V, L63P, I93L  
SE_65 SE_65 None    R57K, I62V, L63P, I93L  
SE_69 SE_69 None    T12S, K14R, I15V, L19I, K20R, M36I, R41K, L63P, H69K, K70R, V77I, L89M, I93L  
SE_72 SE_72 None    D60E, Q61E, I62IV, L63P, I72IV, V77I, I93L  
SE_74 SE_74 None    I13V, K14R, G17E, Q18QL, K20IV, M36I, N37D, H69K, K70R, L89M  
SE_77 SE_77 None    R41K, L63P  
SE_79 SE_79 None    I13IV, G16E, E35D, M36I, R41K, H69K, L89M, I93L  
SE_8 SE_8 None    I15V, N37D, L63P, I93L  
SE_82 SE_82 None   Q58E I13V, R41K, D60E, I62V, L63T, I64V, E65D, V77I, V82I  
SE_83 SE_83 None    T12S, I15V, L19I, K20R, M36I, N37S, R41K, H69K, V77I, L89M, I93L  
SE_84 SE_84 None    T12P, I13V, K14R, I15V, M36I, R41K, L63P, H69K, T74TS, L89M, I93L  
SE_86 SE_86 None    T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L  
SE_87 SE_87 None    L10V, T12A, G16E, M36I, R57K, I62V, L63N, I64V  
SE_88 SE_88 None    I15V, M36I, P39PQ, R41K, L63LIV, I64IL, H69K, L89M, I93L  
SE_89 SE_89 None    I15IV, M36I, R41K, H69K, L89M, I93IL  
SE_9 SE_9 None    I13V, E35D, M36I, R41K, H69K, I72V, L89M  
SE_90 SE_90 None    I15V, E35D, M36I, K45R, R57K, L63T, I72V, I93L  
SE_91 SE_91 None    E35D, M36I, R41K, K45R, R57K, H69K, L89M  
SE_92 SE_92 None    E35D, N37S, R41K, I62V, L63P, I93L  
SE_93 SE_93 None    N37S, I62V, L63S, A71V, V77I, I93L  
SE_95 SE_95 None    T12S, I15IV, L19V, M36I, R41K, L63V, H69K, T74S, L89M, I93L  
SE_96 SE_96 None    I15V, M36I, I62IV, L63LP  
SE_98 SE_98 None    N37NS, R41K, K43R, L63P, V77I, I93L  
SE_99 SE_99 None    I13V, E35D, N37T, R41K, L63LP, A71V, V77I, I93L  

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