Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Pessoa (2014)
Title Identification of a novel HIV-1 circulating recombinant form (CRF72_BF1) in deep sequencing data from blood donors in southeastern Brazil.
Citation Genome Announc
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 5
NumPts 5
Subtype F

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
10BR_MG002 10BR_MG002 Unknown Unknown   V35T, T39M, S162C, K173A, Q174R, Q207E, R211K, V245Q, A272G, K281R, E291D, V292I, E297A, S322T, F346Y, R356K, G359S, A360T, T377L, K390R, A400T, E413D, K431T, V435A, L452K, R461K, V466A, T470I, D471E, T477A, H483Q, L491S, E492T, L517I, S519N, Q524E, A534S, V559I  
10BR_MG003 10BR_MG003 Unknown Unknown   V21I, V35T, T39L, V60I, D123N, I135V, S162C, K173A, Q174K, T200A, Q207D, R211K, V241A, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, E297A, A304E, D324E, Q334N, F346Y, R356K, M357I, G359S, A376S, T377L, K385R, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, R461K, V467I, D471E, T477A, H483Q, L491S, E492N, K512R, L517I, S519N, K527N, A534S  
10BR_MG004 10BR_MG004 Unknown Unknown   P4S, K20R, V35T, T39M, I135V, S162C, K173A, Q174K, T200A, Q207E, R211K, F214L, V245Q, E248N, D250E, S251C, T286A, E291D, V292I, I293V, E297A, E344D, F346S, R356K, G359S, T377V, K390R, Q394L, A400T, K431T, V435A, A446S, R461K, D471E, T477A, H483Q, L484I, L491S, L517I, S519N, K527Q, A534T, A554T  
10BR_MG008 10BR_MG008 Unknown Unknown   V35T, I135V, S162C, E169D, K173T, Q174K, T200A, Q207S, R211K, V245Q, V261I, T286A, E291D, V292I, I293V, E297K, V317A, I329L, F346S, R356K, G359S, K390R, E399D, A400T, K431T, V435T, A446S, L452R, V466A, S468T, D471E, T477A, H483Q, L491S, E492K, L517I, S519N, A534S, V559I  
10BR_MG025 10BR_MG025 Unknown Unknown  V106I V35A, T39A, K49R, I135L, S162C, E169D, P170S, K173A, Q174K, T200A, Q207E, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, E297A, D324E, I329L, R356K, G359S, Q394L, K395R, E399D, A400T, K431T, V435A, E449D, L452R, V466A, S468P, D471E, T477A, Q480H, H483Q, L491P, E492T, Q507H, L517I, S519N, V531I, A534S, V559I  

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