Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Thiam (2013)
Title HIV-1 genetic diversity and drug resistance among Senegalese patients in the public health system.
Citation J Clin Microbiol
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 72
NumPts 72
Subtype CRF02_AG, C, A, CRF06_cpx, B, CRF01_AE, D, CRF09_cpx

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
1229-HALD 1229-HALD NRTI NNRTI M184V, T215F G190A V35K, E36EA, T39DE, S48T, A98AS, K102Q, K122E, D123N, I135M, S162Y, K173T, Q174K, N175Y, D177E, T200A, Q207E, R211K, V245Q, D250E, A272P, R284RK, E291D, V292I, I293V, K311KR  
1254-HALD 1254-HALD NRTI NNRTI   V35T, E36D, V60I, K122E, I135V, S162A, K173T, Q174QK, D177E, I178M, T200A, Q207E, R211K, V245Q, E248D, A272P, T286A, K287KR, E291D, V292I, I293V, P294AT, S322T, I326V C38CW 
133-HALD 133-HALD NRTI NNRTI M41L, D67N, M184V, L210W, T215Y, K219KN  V35T, T39K, K43E, E44D, V60I, W88WC, V118I, K122E, D123E, I135L, S162A, K173T, Q174K, D177E, T200A, Q207E, R211K, V245K, I257V, T286A, E291D, V292I, I293V, P294T, L295M, S322A, I326V, K331N, Q332QK  
1393-HALD 1393-HALD NRTI NNRTI M184MIV  V21I, V35T, E36D, T39TA, V60I, D123E, I135V, S162A, Q174D, D177E, T200A, Q207G, R211K, V245Q, E248D, T286A, A288S, E291D, I293V, P294T, E312D, I326V  
18-HALD 18-HALD NRTI NNRTI D67T, T215A, K219E K103N, V106I, M230L V35T, T39A, V60I, K64H, T69N, I135V, S162A, K173T, Q174K, D177E, I178IM, T200A, E203K, Q207E, R211K, P243T, V245Q, V276I, T286A, E291D, I293V, P294T, S322T  
1837HALD 1837HALD NRTI NNRTI M41L, M184V, L210W, T215Y  V35T, T39K, K43E, E44D, K49R, V60I, D113E, D123EK, R125RK, T131P, E169Q, K173T, Q174K, D177E, I178M, T200A, E203D, Q207E, R211K, T216TP, V245Q F77FSY, A98AP, N136NK, T139TP 
1904HALD 1904HALD NRTI NNRTI M184V K103N I31L, V35T, T39TA, K49R, V60I, K102Q, I135V, S162A, K173A, Q174K, D177E, I178M, T200A, Q207E, L228R, P243T, V245Q  
1916-HALD 1916-HALD NRTI NNRTI M184V K103N, P225H V35T, V60I, S68G, K101KQ, D123E, I135V, S162A, K173T, D177E, I178L, T200A, Q207G, R211K, V245Q, E248N, A272P, T286A, E291D, V292I, I293V, S322T, I326V  
1953-HALD 1953-HALD NRTI NNRTI   K20KR, V35T, V60I, K122Q, I135V, S162A, K173AT, Q174K, D177E, T200A, Q207E, R211K, P243T, V245Q, E248ED, T286A, E291D, V292VI, I293IV, P294PT, S322A, Q334QH  
1992-HALD 1992-HALD NRTI NNRTI M184V V108I, Y181C E6D, V35T, T39K, K43E, K122E, D123S, K173A, Q174K, D177E, T200I, Q207A, R211S, V245E, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, Q330H  
2090HALD 2090HALD NRTI NNRTI M184V G190A V35T, E36A, T39E, S48T, K101A, D121H, K122E, K173A, Q174K, D177E, G196T, T200A, Q207E, R211K, V245Q, D250E  
2174HALD 2174HALD NRTI NNRTI M184V K103N K32Q, V35T, K49R, V60I, G93R, K122E, D123S, S162N, Q174K, D177E, T200A, Q207GR, R211K  
2187HALD 2187HALD NRTI NNRTI M41L, D67N, K70R, M184V, T215Y, K219E A98G, V108I, Y181C, H221Y V35T, E36D, E44D, V60I, D123E, S162D, K173T, Q174K, D177E, I178M, T200A, Q207G, R211K, L228H, V245Q, P247A  
2323-HALD 2323-HALD NRTI NNRTI   V35T, E36S, V90I, K122KE, I135V, S162A, K173A, Q174N, D177E, G196E, Q207E, V245HLQ, D250DE, K275KR, V276VI, K277R, T286A, E291D, V292I, I293V, S322T, I326V  
2353HALD 2353HALD NRTI NNRTI   E29ED, K122E, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, R211K, V245Q, E248D  
2423-HALD 2423-HALD NRTI NNRTI M41L, D67E, K70R, M184V, T215F, K219Q Y181C V35K, K43N, K49KR, K101KQ, I135T, S162T, K173T, Q174K, D177E, T200A, I202V, Q207E, L228LR, V245K, D250E, A272P, T286A, E291D, V292I, I293V, P294T, L310I, S322T  
2461-HALD 2461-HALD NRTI NNRTI M41L, M184V, T215Y A98AG, K103N, Y318F V35T, T39A, I135IV, S162SC, K173T, Q174K, D177E, I178M, T200A, Q207E, R211K, P243T, V245Q, T286A, E291D, V292I, I293V, P294T  
2506-HALD 2506-HALD NRTI NNRTI  K103N V35T, V60I, K122E, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, V245Q, D250E, A272P, L283I, E291D, V292VI, P294T, L301LI, K311R, S322T, I326V  
2523-HALD 2523-HALD NRTI NNRTI V75I, M184V, T215Y K103N, K238T V35T, G45GR, I132L, Y144X, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, V245Q, E291D, V292I, I293V, P294T, E312D, S322A, I326V, K331N  
2541-HALD 2541-HALD NRTI NNRTI M184V G190A V35T, E36D, T39M, K49R, K101KQ, I135V, S162A, T165I, K173T, Q174D, D177E, I178M, T200A, E204K, Q207E, R211K, F214L, P243T, V245Q, K277R, T286A, E291D, V292I, I293V, P294T, K311R, S322P M164MT 
2579-HALD 2579-HALD NRTI NNRTI M184V K103N V35KMR, T39D, S48T, D121DH, K122E, I135T, I142V, A158S, K173A, Q174QR, N175NI, I195L, G196Q, T200A, I202V, Q207E, R211K, Y232YH, V245Q, E248DH, D250E, L260I, A272P, K277R, T286A, E291D, V292I, I293V, V317A  
2590-HALD 2590-HALD NRTI NNRTI M184V, T215F K103N V35T, V60I, D121H, K122E, I135V, S162A, K173T, Q174K, D177E, G196E, T200A, Q207E, R211K, V245E, E248D, K281R, T286A, E291D, V292I, I293V, S322T, I326V, K331N Y318T 
2594-HALD 2594-HALD NRTI NNRTI D67N, K70G, M184V, T215IV, K219Q K103N, E138A, V179E, K238T V35T, T39N, V60I, K64R, V90I, K122E, D123N, I135T, S162A, T165L, K173T, Q174K, D177E, T200A, Q207E, R211K, F214L, V245Q, A272P, K275R, T286A, A288T, E291D, V292I, I293V, P294T, S322T, D324DE, I326V  
2666-HALD 2666-HALD NRTI NNRTI M184V Y181C E6Q, K11T, V35T, E36A, T39K, K43E, D86E, D121H, K122E, I135T, I142V, S162F, M164*, K173S, T200A, Q207A, V245E, K281R, T286A, E291D, V292I, I293V, P294T, L295M, K311R, Y319YH, S322T T165Q 
2667-HALD 2667-HALD NRTI NNRTI M41L, D67N, K70R, M184V, T215F, K219Q K101E, E138Q, G190A V35T, T39A, V60VI, D121DN, K122PQ, I135L, S162A, K173T, Q174K, D177EK, I178L, T200A, I202IV, Q207E, R211K, P243A, V245K, A272P, V292I, I293V, P294T, K311KR, S322T, I326V  
2750-HALD 2750-HALD NRTI NNRTI  K103KN, V108VI, E138A, V179E V35T, E36ED, V60I, S68SG, V90VI, L109LI, K122X, D123E, I135V, S162A, T165L, K173T, Q174R, D177E, T200A, Q207D, R211K, F214FL, V245Q, E248D, A272P, V276I, K277R, L283I, T286A, E291D, I293V, P294T, V317A, S322T, I326V  
2841-HALD 2841-HALD NRTI NNRTI M41L, L74I, M184V, L210W, T215Y A98G, K103N, V108I E28K, K32I, V35T, T39K, K43E, V60I, K101A, V118I, K122E, D123S, K173T, Q174K, D177E, T200A, E203K, Q207D, R211K, K223E, L228R, V245Q, T286A, E291D, I293V, P294T  
3055-HALD 3055-HALD NRTI NNRTI  V108VI V35T, K49R, V60I, K122P, D123E, I135L, S162A, E169D, K173AS, Q174K, D177E, T200A, Q207E, R211RK, V245E, K277R, T286A, E291D, V292VI, I293V, P294T, S322AT, I326V  
3105-HALD 3105-HALD NRTI NNRTI M184V K103N, V108I, K238KIT K20R, V35T, T39M, V60I, V90I, K122P, I135V, T139R, S162A, K173T, Q174K, D177EK, G196E, T200A, Q207E, R211K, D237DN, P243X, V245Q, L246LV, E248X, D250X, S251SI, T253TS, K281R, T286A, E291D, V292I, I293V, P294T, E297R, S322T, I326V  
3181HALD 3181HALD NRTI NNRTI  K103N V35T, V60I, K102Q, D123DE, I135V, S162A, F171Y, K173T, Q174K, D177E, I178M, G196E, T200A, Q207G, R211K, V245Q  
3210-HALD 3210-HALD NRTI NNRTI D67G, K70R, M184V, T215F, K219E A98G, K103N, V108I V35T, E36D, T39L, K49R, S68G, K101KR, K122E, I135V, S162A, E169K, K173T, Q174E, D177E, I178M, T200A, E203K, Q207E, R211K, K223E, P243S, V245Q, E248D, T286A, E291D, I293IV, P294T, L295LM, S322T, I326V, I329IV  
323-HALD 323-HALD NRTI NNRTI   V35T, E36D, K122E, D123N, I135V, S162A, K173T, Q174K, D177E, Q197QE, Q207A, R211K, P243PT, V245Q, T286A, E291D, V292I, I293V, S322T, I326V E248E*K 
3249HALD 3249HALD NRTI NNRTI M184V A98G, K103N, K238T P4S, V35T, V60I, D123E, I135L, S162A, K173R, Q174K, D177E, G196E, T200A, Q207E, R211K, F214L, V245Q  
3259-HALD 3259-HALD NRTI NNRTI D67N, K70R, M184V, K219Q  V21I, V35T, T39A, K49R, V60VI, K122E, D123N, I135T, R172K, D177E, I178L, Q182S, T200I, Q207E, R211K, F214L, V245K, E248D, S251I, A272P, K277R, T286A, E297K, K311R, I329V, Q334E, G335S  
33-HALD 33-HALD NRTI NNRTI  K103N, Y318F V35T, E36D, I47F, S48P, P55X, V60I, K64KR, D123E, I135T, S162A, K173T, Q174K, D177E, T200M, Q207E, R211K, V245Q, E248ED, A272AP, K281R, T286A, E291D, V292I, I293V, P294T, E297EK, H315LP, V317G, Y319X, P321X, S322X, K323X, D324X, L325X, A327AP E312S_L, P313D, D320PST, I326FV 
3307-HALD 3307-HALD NRTI NNRTI M184V, T215Y Y188L V35T, T39E, V60VI, S68G, K104R, I135V, S162A, K173A, Q174K, D177E, I178M, T200A, Q207E, R211K, V245Q, E248D, S251N, T286A, E291D, V292I, I293V, P294T, S322T  
3355HALD 3355HALD NRTI NNRTI   K22R, V35T, K122KE, D123E, S162A, K173T, Q174K, D177E, I178M, T200A, Q207EG, R211Q, F214L, V245K, E248D  
3373HALD 3373HALD NRTI NNRTI M184MV K103N, Y181YC, G190GA V35T, T39X, V90I, I135V, S162A, K173AT, Q174R, D177E, I178M, T200A, Q207E, R211S V241AS, Q242S 
3501-HALD 3501-HALD NRTI NNRTI V75VI, M184V, T215TI A98AG, K103N, V108VI V35T, E36D, D121Y, K122E, I132IL, I135T, S162A, K173T, Q174K, D177E, T200A, Q207E, R211K, V245Q, K281KR, T286A, E291D, V292I, I293V, P294T, S322T, I326V  
3713-HALD 3713-HALD NRTI NNRTI M184V K101E, V106I, G190A E6A, V35T, E36A, T39K, K43E, D121H, K122E, K173S, D177E, V179I, T200A, Q207A, R211RK, V245Q, A272P, T286A, E291D, V292I, I293V, P294T, E312D, I326V, G335D  
3838-HALD 3838-HALD NRTI NNRTI  V106VI V21I, V35T, T39A, S68G, D123DE, I135V, S162A, K173A, Q174K, D177E, T200A, Q207E, R211RK, V245KQ, E248ED, A272P, K277R, L279M, T286A, E291D, I293V, P294A, S322T  
418-HALD 418-HALD NRTI NNRTI L74V, M184V V108I, Y181C, H221Y V35I, V90I, K122E, D123N, I135L, S162A, K173T, Q174K, D177E, T200A, Q207E, I244IV, V245K, D250E, S251I, K275KQ, K281KR, T286A, A288T, E291D, V292I, I293V, P294T, S322T, I326V  
4208HALD 4208HALD NRTI NNRTI D67N, T215Y V106M, G190A V35T, E36ED, T39TA, K43Q, K122P, S162A, K173T, Q174K, D177E, T200A, Q207E, V245Q, E248D  
437-HALD 437-HALD NRTI NNRTI   K32KR, V35T, K49KR, V60I, K122E, D123GS, I135V, S162A, K173T, Q174EK, D177E, I178M, T200A, Q207E, V245Q, E248D, D250G, A272P, T286A, E291D, V292I, I293V, E297A, S322T, I326V I37IN 
4482-HALD 4482-HALD NRTI NNRTI   V35S, T39A, V90I, V118I, K122E, I135V, S162A, T165I, K173T, Q174K, D177E, T200A, Q207E, R211K, F214L, V245Q, K281KR, T286A, V292I, I293V, S322T, I326V  
4532-HALD 4532-HALD NRTI NNRTI  K103N I135T, T165P, T200A, R211RK, F214L, P243T, V245E, V276T, I293V, Q334E  
467-HPD 467-HPD NRTI NNRTI M184V K101P E6K, K11T, V35T, E36A, T39K, K43E, D121H, K122E, D123S, I135T, I142V, S162Y, T165A, R172K, K173S, D177E, V179I, Q207A, V245E, T286A, E291D, V292I, I293V, P294T, L295M, E312D, P321T, I326V, G335D  
471-HALD 471-HALD NRTI NNRTI M184V, L210W, T215F K103N V35T, T39A, V118I, K122E, I135L, S162T, K173T, Q174K, D177E, I178M, T200A, Q207E, V245K, A272P, T286A, V292I, I293V, P294T, S322T, I326V  
495-HALD 495-HALD NRTI NNRTI K70Q, Y115F, M184V  V35T, T39K, K43E, D123E, S162A, T165I, K173T, Q174K, D177E, E194D, G196E, T200A, Q207E, L228R, V245Q, T286A, E291D, I293V, P294A, E297K, L310I, S322A, I326V V10E 
5294HALD 5294HALD NRTI NNRTI K65R, Y115F, M184V A98G, V106I, Y181C, Y188L K11R, V35T, T39E, K46Q, S48T, S68G, D121H, K122E, I135T, T139A, I142V, S162CY, K173S, D177E, T200A, I202V, Q207E, R211K, V245Q  
553HALD 553HALD NRTI NNRTI K70KE  I31M, A33AS, V35T, E36D, D123E, I135V, S162A, K173T, Q174K, D177E, I178L, T200A, Q207E, R211S K30P, K32H 
6004HALD 6004HALD NRTI NNRTI M184V K103N, P225H I31L, V35A, T39M, K49R, D123E, I135L, S162A, E169Q, K173T, Q174K, D177E, T200A, Q207E, R211HQ, V245Q  
619-HPD 619-HPD NRTI NNRTI L74V, M184V K103N, P225H V35T, K122E, I135T, I142V, S162Y, K173S, Q174K, D177E, V179I, Q207A, R211K, V245Q K102Y 
6667HALD 6667HALD NRTI NNRTI M41L, L74V, T215Y K103N, Y181C V35T, T39TA, E44D, V90VI, D123E, I135V, S162A, K173T, Q174K, D177E, T200A, Q207E, R211K  
67-HPD 67-HPD NRTI NNRTI  K103N T27TS, V35T, E36A, T39E, V60I, A98S, K122E, D123S, I135T, K173A, Q174K, T200A, Q207E, R211K, V245Q, D250E, A272P, K277R, L283I, V292I, I293V, P294T T165R 
670-HPD 670-HPD NRTI NNRTI K70KN, M184V, T215F V179E, Y181C V35T, T39L, I47F, I50IF, N54NI, N57NK, K66KR, T69TP, R72K, D76DN, E79D, R83RK, D86DN, I135V, K173T, Q174R, D177E, T200A, Q207E, R211K, F214L, V245Q, D250E, V276X T58P, V60F, W71WG, R78RG, N81NI, T84TP, W88G 
674-HALD 674-HALD NRTI NNRTI M184V A98AG V35T, E36D, D123E, I135V, S162A, K173T, Q174K, D177E, T200A, Q207E, R211S, V245Q, E248D, E291D, V292I, I293V, S322T, I326V, G335D K104KI 
680-HALD 680-HALD NRTI NNRTI   K20R, V21I, V35Q, V60I, T69N, D121Y, K122E, D123DG, S162C, K173T, Q174K, D177E, I178L, T200A, Q207E, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, E297A, K311KR, S322SA  
685HALD 685HALD NRTI NNRTI  E138A V35T, T39S, S68G, K122Q, I135V, T139A, S162A, K173T, D177E, I178M, I195L, T200A, Q207E, V245Q  
686-HPD 686-HPD NRTI NNRTI   T69TN, K122E, D123E, I142V, S162C, D177E, G196E, T200A, R211I, L283I, V317A, Q334H  
7111HALD 7111HALD NRTI NNRTI   V35T, T39E, S48T, K122E, D123N, K173T, Q174K, T200A, I202V, Q207E, R211K, P243T, V245Q, D250E V241VG 
7164-HALD 7164-HALD NRTI NNRTI M184MV, T215TS, K219KE Y181C I5V, E6D, K11T, W24R, K32E, V35T, E36D, V60I, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, R211K, L228R, W229WG K223KN 
7303-HALD 7303-HALD NRTI NNRTI M184V Y188L K30X, K32X, L34LF, V35T, D123N, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207A, R211K I31*LS 
750HALD 750HALD NRTI NNRTI M184V, T215SY K103N, P225PH, K238KT K20R, V35T, E36D, T39S, K49KR, D123E, I135IT, A158AS, S162A, K173T, Q174K, N175H, D177E, I178M, T200EK, Q207E, P243H, V245Q K201N 
803-HALD 803-HALD NRTI NNRTI M184V K103N P4S, P9PT, V35T, S68SG, V90I, T139R, S162A, K173T, Q174K, D177E, E194*, T200A, Q207E, R211K, V245E, A272P, T286A, A288AT, E291D, V292I, I293V, P294T, S322T Y56Y*, F124FS, V189VL, D324DY 
8138HALD 8138HALD NRTI NNRTI   V35T, T39K, V60I, K122E, D123G, I135V, K166KQ, K173I, Q174K, D177E, T200A, Q207E, R211K, F214L, V245Q, E248N, D250E  
828-HALD 828-HALD NRTI NNRTI   V35T, T39A, S48T, V60I, D121Y, K122E, I135T, I142V, S162A, T165TI, D177DE, I178IM, T200A, E204D, Q207E, V245Q, D250E, A272P, K277R, T286A, I326V  
926-HALD 926-HALD NRTI NNRTI M41L, D67N, M184V, L210W, T215Y K101P, K103N K11T, V35T, K43Q, V60I, S68G, V90I, K102N, K122E, I135V, S162A, K173T, Q174K, D177E, D192DN, T200A, Q207E, R211K, K219D  
MH-018 MH-018 NRTI NNRTI K70E, M184V K103N, V108I, V179L, H221Y K11T, V35T, T39R, E40K, K43E, V60I, K102H, D121H, K122E, D123S, I135T, I142V, S162F, K173L, Q174K, D177E, T200A, Q207A, R211K, F214L, V245Q, A272P, T286A, E291D, P294T, E312D, I326V, Q334P, G335D  
MH-022 MH-022 NRTI NNRTI M184MV Y181C V35T, V60I, D121H, K122E, I135R, T139TR, S162C, E169D, Q174K, N175Y, D177E, I178M, T200E, K201R, Q207E, R211K, V245Q, E248D, A272P, E291D, V292I, I293V  
MH-069 MH-069 NRTI NNRTI   V35T, T39A, D121Y, K122E, T165I, Q174K, D177E, V179I, T200A, I202V, Q207E, R211Q, V245Q, E248D, D250E, A272P, T286A, E291ED, I293V, P294T, D324E, I326V, G335D  
SN249HALD SN249HALD NRTI NNRTI D67N, K70GR, M184I, T215Y, K219Q L100I, K103N V35T, E36D, K49R, V60I, I135V, T139K, S162A, T165L, K173T, Q174K, D177E, I178M, T200A, Q207E, H208Y, R211K, V245Q, E248N  

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