Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Leye (2013)
Title High frequency of HIV-1 infections with multiple HIV-1 strains in men having sex with men (MSM) in Senegal.
Citation Infect Genet Evol
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 70
NumPts 70
Subtype C, CRF02_AG, B, G, CRF09_cpx

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
SN.MS002 SN.MS002 None    T12A, L19T, M36I, R41K, L63P, H69K, L89M, I93L  
SN.MS007 SN.MS007 None    T12S, L19I, M36I, R41K, L63P, H69K, I93L  
SN.MS010 SN.MS010 None    T12S, L19I, M36I, P39S, R41K, L63T, H69K, T74S, L89M, I93L  
SN.MS011 SN.MS011 None    G16E, L19I, M36L, N37S, L63M, H69K, I72V, L89M, I93L  
SN.MS013 SN.MS013 None    I13V, K14R, G17E, K20I, M36I, R41K, H69K, K70R, L89M  
SN.MS015 SN.MS015 None    L19V, M36I, R41K, L63G, H69K, L89M, I93L  
SN.MS019 SN.MS019 None    I13V, I62V, L63P  
SN.MS029 SN.MS029 None    T12S, L19I, M36I, R41K, L63P, H69K, I93L  
SN.MS034 SN.MS034 None    K14R, G16E, M36I, R41K, H69K, L89M, I93L  
SN.MS036 SN.MS036 None    I13V, L19P, K20I, M36I, R41K, H69K, L89M  
SN.MS103 SN.MS103 None    I13V, N37T, I62V, L63P  
SN.MS178 SN.MS178 None    I13V, K14R, G17E, K20I, M36I, R41K, H69K, K70R, L89M  
SN.MS206 SN.MS206 None    I13V, K14R, L19P, K20I, E35D, M36I, R41K, H69K, L89M V11C 
SN.MS209 SN.MS209 None    I13V, K14R, I15V, K20I, E35Q, M36I, N37D, R41K, R57K, I64M, C67E, H69K, V82I, L89M  
SN.MS210 SN.MS210 None    I13V, K14R, I15V, K20I, E35Q, M36I, N37D, R41K, R57K, I64M, C67E, H69K, V82I, L89M  
SN.MS235 SN.MS235 None    I13V, K20I, M36I, R41K, H69K, I72M, L89M  
SN.MS245 SN.MS245 None    T12S, L19I, M36I, R41K, L63T, H69K, T74S, L89M, I93L  
SN.MS253 SN.MS253 None    L10V, I13V, G16E, L19P, K20I, E35D, M36I, N37S, R41K, H69K, K70R, I72V, L89M  
SN.MS258 SN.MS258 None    I13V, K14R, G17E, K20I, M36I, R41RK, K43R, H69K, L89M  
SN.MS262 SN.MS262 None    T4TP, W6WC, T12S, L19I, M36I, R41K, L63S, H69K, L89M, I93L  
SN.MS268 SN.MS268 None    I13V, L19P, K20I, M36I, R41K, L63P, I64L, H69K, L89M  
SN.MS279 SN.MS279 None    I13V, K14R, K20I, E35Q, M36I, N37D, R41K, R57K, I64M, C67E, H69K, V82I, L89M  
SN.MS281 SN.MS281 None    I13V, K14R, K20I, E35Q, M36I, N37D, R41K, R57K, I64M, C67E, H69K, V82I, L89M  
SN.MS285 SN.MS285 None    I13V, K14R, L19I, K20I, E35Q, M36I, N37ND, R41K, R57K, I62V, L63P, C67E, H69K, V82I, L89M  
SN.MS291 SN.MS291 None    L10V, I13V, G16E, L19P, K20I, E35D, M36I, R41K, H69K, K70R, I72V, L89M  
SN.MS297 SN.MS297 None    I13V, K14R, I15V, K20I, E35Q, M36I, N37D, R41K, R57K, I64M, C67E, H69K, V82I, L89M  
SN.MS422 SN.MS422 None    L10V, G16E, L19I, M36I, L63S, H69K, I72V, I93L  
SN.MS440 SN.MS440 None    T12S, L19T, M36I, R41K, L63S, H69K, I93L  
SN.MS445 SN.MS445 None    L10I, I13V, G16E, K20R, M36I, R41K, L63M, H69Q, L89M  
SN.MS448 SN.MS448 None    G17GD, L19I, M36I, R41K, L63PS, H69K, L89M, I93L  
SN.MS456 SN.MS456 None    L19T, M36T, R41K, L63S, H69K, L89M, I93L  
SN.MS463 SN.MS463 None    L10I, I13V, K20R, M36I, R41K, L63M, H69Q, L89M  
SN.MS474 SN.MS474 None    I13V, G16E, L19V, K20I, M36I, L63A, H69K, K70E, L89I  
SN.MS475 SN.MS475 None    L19T, M36I, R41K, L63P, H69K, T74S, L89M, I93L  
SN.MS477 SN.MS477 None    L19V, M36I, R41K, L63G, H69K, L89M, I93L  
SN.MS481 SN.MS481 None    I13IV, L19I, K20KR, M36I, R41K, L63P, H69K, L89M, I93L  
SN.MS482 SN.MS482 None    L63P, I72E  
SN.MS483 SN.MS483 None    N37T, R57K, L63P, A71V, V77I, I93L  
SN.MS486 SN.MS486 None    P1L, I13V, K14R, K20I, E35H, M36I, N37D, R41K, R57K, L63P, C67E, H69K, V82I, L89M R8L 
SN.MS487 SN.MS487 None    L19V, M36I, R41K, L63G, H69K, L89M, I93L  
SN.MS492 SN.MS492 None    T12S, L19I, M36I, R41K, L63S, H69K, I72V, L89M, I93L  
SN.MS516 SN.MS516 None    I13V, K14R, G17E, K20I, M36I, R41K, L63P, H69K, K70R, V75I, L89M  
SN.MS522 SN.MS522 None    I15V, G16E, L19I, M36L, N37S, R41K, L63A, H69K, I72V, I93L  
SN.MS540 SN.MS540 None    T12S, L19I, M36I, R41K, L63T, H69K, T74S, L89M, I93L  
SN.MS605 SN.MS605 None    L10V, I15V, M36I, R57K, L63P, I64L, I93L  
SN.MS614 SN.MS614 None    I93L  
SN.MS618 SN.MS618 None    I13V, K14R, L19P, K20I, E35D, M36I, R41K, H69K, L89M  
SN.MS619 SN.MS619 None    L10V, I15V, G16E, R57K, I93L  
SN.MS636 SN.MS636 None    I13V, L19P, K20I, E35N, M36I, R41K, H69K, L89M  
SN.MS641 SN.MS641 None    I13V, G16E, L19V, K20I, M36I, N37D, Q61QH, L63AS, H69K, K70E, L89I  
SN.MS642 SN.MS642 None    I13V, K14R, K20I, E35Q, M36I, N37D, R41K, R57K, C67E, H69K, V82I, L89M  
SN.MS651 SN.MS651 None    R41K, L63Q, I72M, V77I  
SN.MS668 SN.MS668 None    I13V, L19I, K20I, M36I, R41K, I64M, H69K, K70R, L89M  
SN.MS700 SN.MS700 None    T12S, L19I, M36I, R41K, L63T, H69K, T74S, L89M, I93L  
SN.MS779 SN.MS779 None    T12S, L19I, M36I, R41K, L63T, H69K, T74S, L89M, I93L  
SN.MS802 SN.MS802 Unknown    E35D, R41K, L63A, H69Q, A71V, I93L  
SN.MS812 SN.MS812 None    T12A, I13V, I15V, E35ED, N37T, I64IV  
SN.MS816 SN.MS816 None    I15V, G16E, L19I, M36I, R41K, L63M, H69K, I72V, L89M, I93L  
SN.MS821 SN.MS821 None    L19I, M36T, R41K, L63S, H69K, L89M, I93L  
SN.MS823 SN.MS823 None    L10I, I13V, K20R, M36I, R41K, L63M, H69Q, L89M  
SN.MS830 SN.MS830 None    N37T, R57K, I62V, L63D, A71V, I72S, V77I, I93L  
SN.MS831 SN.MS831 None    I13V, K14R, L19V, K20I, M36I, L38F, R41K, H69K, K70R, L89M  
SN.MS835 SN.MS835 None    T12P, G16E, L19I, M36I, L63G, H69K, L89M, I93L  
SN.MS838 SN.MS838 None    I13V, I15V, N37T, R41K, R57K, L89M  
SN.MS840 SN.MS840 None    I13V, L19P, K20I, D29DN, E35EK, M36I, R41K, H69K, K70R, L89M  
SN.MS842 SN.MS842 None    I13V, I15L, K20I, M36I, R41K, H69K, L89M  
SN.MS855 SN.MS855 None    T12S, L19T, M36I, R41K, L63S, H69K, I93L  
SN.MS868 SN.MS868 None    I13V, I15V, N37T, H69Y, L89M  
SN.MS869 SN.MS869 None    I13V, K14R, K20I, M36I, R41K, I64IM, H69K, L89M  
SN.MS883 SN.MS883 None    L19V, E34EK, M36I, R41K, L63G, H69K, L89M, I93L  

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