Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Bao (2008)
Title Molecular tracing of sexual HIV Type 1 transmission in the southwest border of China.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 44
NumPts 44
Subtype CRF01_AE, CRF08_BC, G, B, B + C

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
YUN01-01 YUN01-01 None None   E6D, V35M, T39K, K43E, K122E, D123S, K173L, Q174K, D177E, Q207A, R211S, K238R, V245E, A272G, T286A, E291D, V292VI, I293V, E297EK, E312T, I329V, G335D, R356K, M357K, G359S, K366R, A371V, K395R, A400T, T403M, E432D, V435I  
YUN01-02 YUN01-02 None None   E6D, V35T, T39K, K43E, K122E, D123S, S162C, K173T, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R, V245E, A272P, T286A, L289I, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, A400T, T403M, E432D  
YUN01-03 YUN01-03 None None   E6D, V35T, T39K, K43E, K122E, D123S, S162C, K173T, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R, V245E, A272P, K275R, T286A, L289I, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, A400T, T403TM, E432D  
YUN01-05 YUN01-05 None None  V179D V35T, E36X, T39DN, S48E, E53D, V60I, I135V, S162X, Q207E, R211K, V245Q, A272P, K277R, T286A, E291ED, V292I, I293V, V317A, D324E, G335D, P345Q, R356K, M357MI, G359T, K366R, T377M, T386I, K390R, A400T, E404D, E430R, E432I  
YUN01-06 YUN01-06 None None   V35T, E36A, T39E, S48T, E53D, V60I, I135V, S162C, V179T, Q207E, V245Q, A272P, T286V, E291D, V292I, I293V, P313A, V317A, P321S, D324E, R356K, G359T, T377V, T386I, K390R, A400T, E404D, E432D, I434M  
YUN01-07 YUN01-07 None None   V35T, E36X, T39E, S48T, E53D, V60I, I135V, S162C, V179T, Q207E, R211K, V245H, A272P, T286V, E291D, V292I, I293V, P313S, V317A, P321S, D324E, R356K, G359T, T377M, I380IV, T386I, K390KR, A400T, E404D, E432D, V435A  
YUN01-08 YUN01-08 None None   E6D, K11T, V35T, T39K, K43E, K101R, K122E, D123S, K173I, Q174K, D177E, I178M, T200I, Q207A, R211S, V245E, A272P, I274V, T286A, E291D, V292I, I293V, E312N, I326V, I329V, G335D, M357K, R358G, G359S, K366R, A371V, T377R, K390R, K395R, A400T, T403M, E432D  
YUN01-09 YUN01-09 None None   E6D, K11T, V35T, T39K, K43E, E79ED, L80X, K101R, K122E, D123NS, K173I, Q174K, D177E, I178M, I180V, T200I, Q207A, R211S, V245E, A272P, I274V, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D, F346C, R356G, M357K, R358G, G359S, K366R, A371V, T377R, K390R, K395R, A400T, T403M, E432D  
YUN01-10 YUN01-10 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, I135T, K173I, Q174K, D177E, I178IM, V179VI, I202V, Q207A, R211S, V245E, T286A, E291D, V292I, I293V, E312T, I329V, G335D, P345PQ, M357K, G359S, K366R, T369A, A371V, K390R, K395R, A400T, E432D  
YUN01-11 YUN01-11 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, K173I, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R, V245A, V276I, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, K395R, A400T, T403M, E432D  
YUN01-12 YUN01-12 None None A62AV, M184MI K103N, G190A E6D, K11T, V35T, T39K, K43E, S68G, V90I, K122E, D123N, K173I, Q174K, D177E, I178M, V179IT, T200TA, Q207A, L210M, R211S, K238R, V245E, A272P, E291ED, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, I382ILV, K390R, E399D, A400T, T403M, E432D  
YUN01-13 YUN01-13 None None   E6D, V35T, T39K, K43X, S68G, T69N, K122E, D123S, I135T, K173I, Q174K, D177E, I178M, T200A, Q207A, R211S, K238R, V245E, A272P, V276I, L283I, T286A, A288S, I293V, E312X, Y319X, I326IV, I329V, G335D, M357K, G359S, K366R, A371V, K390R, T397I, A400T, E432D  
YUN01-14 YUN01-14 None None   E6D, V8I, K11T, V35T, T39K, V60I, S68G, D121C, K122E, D123S, I135T, K173R, Q174K, D177E, V179I, T200I, Q207A, R211S, K238R, V245E, T286A, E291D, V292I, I293V, E312T, V317A, I326V, I329V, Q334K, G335D, M357K, G359S, K366R, A371V, K390R, T403M, E432D  
YUN01-15 YUN01-15 None None   E6D, V35T, T39K, K43E, S68G, T69N, K102R, K103R, K122E, D123S, I135T, K173V, Q174K, D177E, I178M, V179I, T200A, Q207A, R211S, K238R, V245E, V276I, L283I, T286A, I293V, K311AT, E312N, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, T397I, A400T, E432D  
YUN01-16 YUN01-16 None None   E6D, V8I, K11T, V35T, T39K, K43E, K122E, D123S, K173V, Q174K, D177E, I178IM, T200V, Q207A, R211S, V245E, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, T377M, S379C, K390KR, A400T, T403M, E432D  
YUN01-17 YUN01-17 None None   E6D, K11T, V35T, T39K, K43E, S68G, K122E, D123S, I135T, K166R, K173I, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R, V245E, V276I, L283I, T286A, V292I, I293V, E312T, I326V, I329V, G335D, P345T, R356K, M357K, G359S, A371V, T386I, K390R, A400T, E432D  
YUN01-18 YUN01-18 None None   E6D, K11T, V35T, T39K, K43E, S68G, K122E, D123N, I135T, K166R, K173I, Q174K, D177E, T200I, Q207A, R211S, K238R, V245E, V276I, T286A, V292I, I293V, E312T, I326V, I329V, G335D, R356K, M357K, G359S, K366R, A371V, K390R, K395R, T397TI, A400T, E432D  
YUN01-19 YUN01-19 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135IV, S162C, Q207EK, R211K, K238R, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, V317A, D324E, G335D, R356K, M357R, G359T, T377IM, T386I, K390R, A400IT, E404D, E430R, E432I  
YUN01-20 YUN01-20 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, I135T, K173I, Q174K, D177E, T200I, Q207A, R211S, F214L, K238R, V245K, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, K395R, A400T, E432D  
YUN01-21 YUN01-21 None None   E6D, V35T, T39K, K43E, K122E, D123S, S162C, K173I, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R, V245E, A272P, T286A, V292VI, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, V381I, K390R, K395R, A400T, T403M, E432D  
YUN01-22 YUN01-22 None None   E6D, V35T, T39K, K43Q, S68G, K122E, D123N, I135T, K166R, K173I, Q174K, D177E, I178M, T200A, E203D, Q207A, R211S, K238R, V245E, V276I, L283I, T286A, I293V, E312T, I326V, I329V, G335D, P345Q, M357K, G359S, K366R, A371V, K390R, K395R, T397I, A400T, E432D  
YUN01-23 YUN01-23 None None  E138A V35T, T39N, S48T, E53D, V60I, K122E, I135V, S162C, Q207E, R211K, V245E, A272P, K277R, T286A, E291D, V292I, I293V, V317A, D324E, Q334N, G335D, I341V, K347R, R356K, G359A, T377M, T386I, A400T, E432D, V435A  
YUN01-24 YUN01-24 None None   I31IV, D121Y, K122E, T165I, T200I, I202V, Q207E, R211K, V245R, A272P, K277R, R284K, E291D, V292I, I293V, P294Q, V317I, Q334L, P345Q, F346Y, T377M, K390R, A400T, E404D  
YUN01-25 YUN01-25 None None   E6D, V35I, T39K, K43E, V60I, S68G, K122E, D123N, I135R, K166R, K173I, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R, V245E, L283I, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, A400T, T403M, E432D  
YUN01-26 YUN01-26 None None  V179D E6D, K11T, E28K, K32E, V35T, T39E, V60I, S68G, A98S, K102Q, K103R, K122E, D123N, K173R, Q174K, N175Y, D177E, T200E, E203K, Q207A, R211K, V245E, A288S, E291D, I293V, E297P, R307K, K311R, E312T, I329V, G335D, R356K, M357K, G359S, K366R, V381I, A400T, T403M, E432D  
YUN01-27 YUN01-27 None None   E6DN, K11T, V35T, T39K, V60I, S68G, K122E, D123N, K173I, Q174K, D177E, T200I, Q207A, R211N, V245E, T286A, E291D, V292I, I293V, E297T, E312T, V317VA, I326V, I329V, G335D, R356K, M357K, G359S, K366R, A371V, A376V, T386A, K390R, K395R, A400T, T403M, E432D  
YUN01-28 YUN01-28 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, V179T, T200A, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I, I293V, P313T, I329V, Q334K, G335S, R356K, G359T, T377M, T386I, K390R, A400T, E404D, E430R, E432I  
YUN01-29 YUN01-29 None None   E6D, V8I, K11T, V35T, T39E, K122E, D123S, I135T, K173I, Q174K, D177E, I202IV, R211N, K238R, V245E, E291D, V292I, I293V, K311R, E312T, I326V, I329V, G335D, R356K, M357K, G359S, K366R, A371V, K390R, K395R, A400T, T403M, E432D Q207I 
YUN01-30 YUN01-30 None None  V179D K20R, V35T, E36A, T39E, S48T, E53D, V60I, I135V, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, A304E, V317A, D324E, G335D, R356K, G359T, T377M, T386I, K390R, A400T, E404D, E432D, V435A  
YUN01-31 YUN01-31 None None  E138EA V35T, T39N, S48T, E53D, V60I, K122KE, I135V, S162C, Q207E, V245E, A272P, K277KR, T286A, E291D, V292I, I293V, V317A, D324E, I329IV, Q334QK, G335GD, R356K, G359T, T377M, T386I, A400T, E404D, E432D, V435A  
YUN01-32 YUN01-32 None None   V35T, T39D, S48T, E53D, V60I, S162C, D177DE, I178L, Q207E, R211K, V245Q, A272P, K277R, T286A, E291ED, V292I, I293V, V317A, D324E, G335D, R356K, G359T, A376S, T377M, T386I, K390R, A400T, E404D, E432D, V435A  
YUN01-33 YUN01-33 None None  E138A V35T, E36A, T39E, S48T, E53D, S162C, V179I, Q207E, R211K, V245Q, A272P, T286A, E291D, V292I, I293V, A304E, V317T, G335D, R356K, M357R, G359T, T377Q, T386I, K390R, A400T, E404D, E430KR, E432I, I434L, V435A  
YUN01-34 YUN01-34 None None   E6D, V35M, T39K, K43E, K122E, D123S, K173L, Q174K, D177E, Q207A, R211S, K238R, V245E, A272G, K277R, T286A, E291D, V292I, I293V, E297K, E312T, I329V, G335D, R356K, M357K, G359S, K366R, A371V, K395R, A400T, T403M, E432D, V435I  
YUN01-35 YUN01-35 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, V317A, D324E, G335D, R356K, G359T, T377M, I380V, T386I, K390R, A400T, E404D, E432D, V435A  
YUN01-36 YUN01-36 None None   V35T, T39N, S48T, E53D, V60I, V90I, K122E, I135V, S162C, Q207E, R211K, I244V, V245Q, A272P, K277R, L283I, V292I, I293V, A304E, V317A, D324E, Q334H, G335D, R356K, G359T, T386I, K390R, A400T, E404D, E432D, V435A  
YUN01-37 YUN01-37 None None   E6D, K11T, V35T, T39K, K43E, V60I, S68G, D86E, D121Y, K122E, D123N, K173I, Q174K, D177E, G196E, Q207A, R211S, K238R, V245E, V276I, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, K395R, A400T, T403M, E432D  
YUN01-38 YUN01-38 None None   E6D, V35T, T39K, K43A, V60I, S68G, T69N, K122E, D123S, I135T, K166R, K173I, Q174K, D177E, I178M, T200A, Q207A, R211S, K238R, V245E, V276I, L283I, T286A, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, K395R, T397I, A400T  
YUN01-39 YUN01-39 None None   V35T, E36T, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K, V245Q, E248A, D250E, A272P, K277R, T286A, E291D, V292I, I293V, V317A, D324E, G335D, E344EG, F346C, R356K, G359T, T377M, T386I, K390R, A400T, E404D, E432D  
YUN01-40 YUN01-40 None None   E6K, K32E, V35K, E36A, T39E, A98S, K122E, D123S, I135K, K166T, K173T, Q174K, D177E, I178M, T200A, Q207E, V245Q, E248N, D250E, A272P, T286A, E291D, V292I, I293V, E297K, K311R, D324E, I329V, Q334L, G335D, F346Y, R356K, M357R, R358G, G359S, A371V, S379G, T386V, K390R, Q394R, A400V, E413D, Q428R, K431T  
YUN01-41 YUN01-41 None None   E6D, V35T, T39K, K43E, K122E, D123S, S162C, K173I, Q174K, D177E, I178M, T200R, Q207A, R211S, V245E, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, R358T, G359S, K366R, A371V, K390R, A400T, T403M, E432D  
YUN01-43 YUN01-43 None None   I5V, V35T, T39K, K43E, K122E, D123S, S162C, K173R, Q174K, D177E, G196E, Q207A, R211S, K238R, V245E, T286A, E291D, V292I, I293V, E312N, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, A400T, T403M, E432D  
YUN01-44 YUN01-44 None None   V35T, E36A, T39D, S48T, E53D, V60I, K122KN, I135V, G141GA, S162C, Q207E, R211K, V245Q, A272P, K277R, V292I, I293V, D324E, Q334H, G335E, K350KR, R356K, G359T, A371AT, T377M, T386I, A400T, E404D, E432D A114AP 
YUN01-45 YUN01-45 None None   E6D, V8I, K11T, V35T, T39K, K43E, V60I, S68G, K122E, D123S, I135T, K173I, Q174K, D177E, V179I, Q207A, R211S, K238R, V245E, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, A400T, T403M, E432D  
YUN01-46 YUN01-46 None None   V35T, E36A, T39E, S48T, E53D, V60I, D123E, I135V, S162C, Q207E, R211K, V245Q, E248A, A272P, E291ED, V292I, I293V, P313PS, V317I, D324E, R356K, G359T, T377M, K390R, A400T, E404D, E432D, G436E A437P 

Database

Resources

Team