Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Aulicino (2011)
Title Longitudinal analysis of HIV-1 BF1 recombinant strains in vertically infected children from Argentina reveals a decrease in CRF12_BF pol gene mosaic patterns and high diversity of BF unique recombinant forms.
Citation Infect Genet Evol
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 194
NumPts 194
Subtype B, CRF12_BF, B + F, F


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Page 1   listing Isolate 1 to Isolate 100 from Total 194 Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
2133-L458JCD 2133-L458JCD NRTI NNRTI D67G, K70R, T215I, K219Q  V35T, T69N, D121H, K122E, I135M, S162H, K166R, V179I H198A, P226H 
3005-M993MNY 3005-M993MNY NRTI NNRTI  K103N, V106M V35T, V60I, K122E, D123S, I135V, D177E, I178L  
3006-M668AS 3006-M668AS NRTI NNRTI M184V, T215F K103N V35I, V60I, A98S, V118I, D123E, I135T, I142V, F214L  
310-N260ABE 310-N260ABE NRTI NNRTI M184V, L210W, T215Y  V21I, S48T, Y56F, D123E, I142V  
3121-O269FJN 3121-O269FJN NRTI NNRTI D67N, K70R, M184V V106I, Y188L V35T, I47F, S48Q, I135V, R211K  
3144-N263SNM 3144-N263SNM NRTI NNRTI M184V  V35T, K122E, I135L  
322-N783QMM 322-N783QMM NRTI NNRTI   V35T, V60I, I135L  
3225-O153AGL 3225-O153AGL NRTI NNRTI M184V  V35T, T39M, D123E, I135T, I178L, V179I P226H 
326-M430DCM 326-M430DCM NRTI NNRTI D67N, K70R, T215F, K219E  V35I, S68G, R78K, W88C, D123E, I178M  
3282-N105OBM 3282-N105OBM NRTI NNRTI M184V, K219R K103N, V108I V35I, K102H, D123E, I135T, T200A, I202V, Q207E  
3343-N414ML 3343-N414ML NRTI NNRTI D67N, K70R, M184V, K219Q  V35T, T39A, K122E, D123N, I135T, I178L, T200R, R211I, F214L, D218E  
3428-M519TGY 3428-M519TGY NRTI NNRTI   V35T, K122E, F214L  
3449-M959LPF 3449-M959LPF NRTI NNRTI  V106I, Y188L P4S, V35T, T39L, S162C, E169D, V179I, V189I, R211K Q197T 
3516-L418FPF 3516-L418FPF NRTI NNRTI M184V  V35I, I135L, Q174H, D177E, R211K Q85H 
3613-N342EYS 3613-N342EYS NRTI NNRTI   V8I, V35T, K166R, R211K  
3947-L568GJL 3947-L568GJL NRTI NNRTI   V35I, E53D, K122E, I135V  
4153-N651CMN 4153-N651CMN NRTI NNRTI M41L, L74V, M184V, T215Y L100I, Y188L V21I, V35Q, V60I, I135L, Q174K, N175Y, T200D E36R, I37Y, C38V, T39W 
4184-N131SNC 4184-N131SNC NRTI NNRTI M41L, M184V, T215Y V179E V35T, T39K, V60I, D86E, I135V, T139K, Q207R  
4290-M795MV 4290-M795MV NRTI NNRTI M184V  K20R, V35T, K102Q, I135T, D177E, I178M  
4339-O131MJL 4339-O131MJL NRTI NNRTI A62V, M184V  V35T, I135T, I202V L205V 
4389-M378SL 4389-M378SL NRTI NNRTI M184V  V35T, T39L, D123E  
4396-L592FMC 4396-L592FMC NRTI NNRTI M41L, D67G, L74V K101P, K103S, G190A E28K, K32E, V60I, S68G, K122E, D123E, I135T, I142T, V179I, T200I  
4426-M132SV 4426-M132SV NRTI NNRTI   V35M, T39A, K102R, I135V  
444-O288CCR 444-O288CCR NRTI NNRTI M41L, L74I, V75T, Q151M, M184V  V35T, T39A, A62P, S68G, K122E, D123N, I135V, I142V, R172K, D177E, I178L  
4532-M793GEM 4532-M793GEM NRTI NNRTI   V35T, T39R, E40D, K122E, D123N, P176Q, T200A, R211S  
4776-O263FSA 4776-O263FSA NRTI NNRTI M41L, L74I, M184V, T215Y  K20R, V35T, V60I, V118I, K122P, D123E, I135V, S162A G155E 
59-O184CME 59-O184CME NRTI NNRTI M41L, M184V Y181C T7A, V35T, T39S, S68G, S134SC, T139R, S162C, V179I, T200A, R211K  
662-N701DLC 662-N701DLC NRTI NNRTI M184V  I135L, Q207H, R211K  
96-N422ELE 96-N422ELE NRTI NNRTI M41L, L74I, M184V, L210W, T215Y K103N K20R, V35T, E44D, V60I, A98S, K101Q, I135M, S162A, D177N, I178M, G196E, R211K F61Y 
ARK870VIE ARK870VIE NRTI NNRTI M41L, D67N, K70R Y181I V35T, K49E, I50V, T69N, V118I, K122E, I142K, E169D, Q207E, H208Y, R211K  
ARK883PAI ARK883PAI NRTI NNRTI M41L, L74LV, T215Y Y181C, G190A E6EK, V35T, T39A, K43NS, E44X, K49X, K122E, I135V, T165I, T200A  
ARK916CJ ARK916CJ NRTI NNRTI M41L, V75I, M184V, T215Y K103N V35T, V60I, D123E, I132L, I135IV, S162SCY, I178IM, T200A, R211K  
ARL119CL ARL119CL NRTI NNRTI L74V, Q151M V106I K20KR, V35T, T39K, I63V, K122E, I142L, K166R K70Y 
ARL162MJM ARL162MJM NRTI NNRTI M41L, D67N, T69D, K70R, M184V Y181C V35T, T39A, G45GE, K49KR, V60I, K122E, I135V, R211T  
ARL374OMF ARL374OMF NRTI NNRTI M41L, D67E, L210W, T215Y  V35I, K43Q, S68G, V118I, I135T, T200K, E203D, R211K  
ARL388RAE ARL388RAE NRTI NNRTI M41L, T215Y Y188L K20R, V35T, A98S, V118I, I135T, I142V, S162Y, K173T, Q174K, T200I, E203D, Q207E, R211K  
ARL411LCO ARL411LCO NRTI NNRTI D67N, K70R, M184V, T215Y, K219E K101E I5IL, V35T, E36D, T39L, V60I, T69TA, K122E, D123E, I135R, Q174H, T200A, I202V, Q207E  
ARL449AMA ARL449AMA NRTI NNRTI D67N, T69D, K70R, L74I, V75T, Y115F, M184V, T215V, K219Q E138A V35I, T39A, V60I, K64H, T107P, K122E, D123N, I135L, T200A  
ARL550FAN ARL550FAN NRTI NNRTI K70T, V75I, F77L, Y115F, F116Y, Q151M, M184V E138K, G190E K20R, V35M, T39A, S68G, T69I, V90I, D113E, V118I, I135V, D177N, V179G, F214L  
ARL589CJA ARL589CJA NRTI NNRTI M41L, D67N, L210W, T215Y  E28K, K32E, V35T, E36A, T39K, K43E, E44D, V60I, V118I, K122P, D123E, I135T, D177E, V179I, R211K, D218DN  
ARL613ADS ARL613ADS NRTI NNRTI M41L, L74V, T215F L100I, K103N P14A, K20R, K43N, I135L, D177G P226H 
ARL622bisBCN ARL622bisBCN NRTI NNRTI M41L, T215Y  V118I, K122E, I135T, Q207E  
ARL636VSQ ARL636VSQ NRTI NNRTI D67N, T69D, K70R, M184V, T215F, K219Q  K20R, V35KT, V118I, I135V, T200K, F214L L80LP, F160FL 
ARL651DGA ARL651DGA NRTI NNRTI M41L, T215Y K103N, Y181C E53D, V90I, K122A, I135L, I142T, S162H, D177E, I178V N147S 
ARL684CJM ARL684CJM NRTI NNRTI M41L, D67N, K70R, T215F, K219E  V35T, T39A, V60I, V90I, D121H, K122E, I135V, S162Y, I178M, V179I  
ARL692LLN ARL692LLN NRTI NNRTI M184V E138EA V35R, D123E, I135IT, I178M, V179I, T200I, I202V K73E 
ARL733GAM ARL733GAM NRTI NNRTI M41L, D67~, T69G, K70R, L74V, M184V, T215Y, K219E L100I, K103N V35L, T39A, K43E, E44A, V60I, K122E, K126KR, T139K, I142V, Q174QR, V179I, G196GE, T200A, E203K, Q207E, H208Y, R211RK  
ARL908RAB ARL908RAB NRTI NNRTI M41L, D67N, T69D, M184V, L210W, T215Y, K219N V108I, V179L, Y181V P4X, T27A, E28K, K32E, V35M, T39K, E40F, K43E, W88C, L109I, D123E, S162D, K166R, D177E, G196E, I202V, H208Y, R211K  
ARL955GLD ARL955GLD NRTI NNRTI M41L, D67E, T69S_ST, V75M, L210W V106I, V179L, Y188L V35I, T39A, K43Q, V90VI, K101Q, V118I, K122E, Q207E, T215X  
ARM144EJA ARM144EJA NRTI NNRTI M41L, D67N, L74V, M184V, L210W, T215Y, K219E L100I, K103N V35M, T39K, E44D, V60I, K122E, D123N, D177G, G196GE  
ARM257FLA ARM257FLA NRTI NNRTI M41L, K65E, L74V, M184V, T215Y  V35T, K43E, I47IF, S68G, V118I, K122E, I135V, S162C, E194K, R211K  
ARM288VRG ARM288VRG NRTI NNRTI M41L, L74V, Y115F, M184V, T215Y L100I, K103N V35I, T39A, V118I, K122E, I135T, T200A  
ARM295FFS ARM295FFS NRTI NNRTI D67N, K70R, L74V, T215Y, K219E L100I, K103N, V108I V35M, T39A, V60I, D123E, I135L, D177E, T200A, E203D, H208Y, R211K  
ARM36WMR ARM36WMR NRTI NNRTI M41L, D67N, M184I, L210W, T215C, K219E L100I, K103N V35T, T39A, E44D, T69N, V118I, K122E, D123E, I135T, T200A P226H 
ARM406DLV ARM406DLV NRTI NNRTI D67N, T69D, K70R, M184V, T215V  V35T, V60I, I135L, V179I, F214L  
ARM48AN ARM48AN NRTI NNRTI M41L, D67N, V75M, F77L, L210W, T215Y, K219R K103N K20R, V35L, T39A, K43E, E44D, V60I, K102KR, V118I, K122KE, T200TA, E203D, H208Y, R211K, D218E  
ARM512NYN ARM512NYN NRTI NNRTI M41L, A62V, M184V, L210W, T215Y Y181I T7P, K43N, E44D, K101Q, D123E, I135V, I142V, E169D, V179I, T200K, R211K  
ARM522BCE ARM522BCE NRTI NNRTI M41L, D67N, T69D, M184V, L210W, T215Y K103N, V179F, Y181C, G190A S3C, K32E, V35M, K43E, E44A, K101R, L109LMV, V111I, K122E, I135V, T139K, I167V, T200A, E203D, H208Y, R211T  
ARM53NBE ARM53NBE NRTI NNRTI M184V Y181V K49R, K101Q, K122E, E169D, D177N, V179I, T200A, F214L  
ARM556FYS ARM556FYS NRTI NNRTI M41L, D67N, L74V, L210W, T215Y, K219N Y181C, G190S E6D, K20R, V35M, E44D, K101T, V118I, K122E, D123E, I135T, Q174K, G196E, H208Y, R211K, D218E  
ARM616GGW ARM616GGW NRTI NNRTI M41L, D67N, T69D, M184V, T215Y  K20R, V35T, T39TA, E44D, V60I, D123E, I135V, T200A, H208Y, L210Y, R211K  
ARM640RCA ARM640RCA NRTI NNRTI M184V K103N E28K, T69S, K101Q, I135L, D177E, V179I, G196E, T200A, Q207E  
ARM645HLA ARM645HLA NRTI NNRTI M184V, T215D  V35T, K122E, D123E, I135V  
ARM674VJ ARM674VJ NRTI NNRTI D67N, K70R, M184V K103N E28R, K32E, V35T, A98S, K101Q, K122E, I135V, T200A A114T 
ARM730WD ARM730WD NRTI NNRTI M41L, D67N, T69D, L210W, T215Y, K219R  E28R, K32E, V35T, E44D, V60I, V90I, V118I, K122E, I135V, T200A, H208Y, R211K, D218E  
ARM757FNA ARM757FNA NRTI NNRTI D67N, K70R, M184V, K219Q V106I, Y188L V35I, K64N, T69N, I135L, V179VI, G196E, E203K  
ARM798MSN ARM798MSN NRTI NNRTI M41L, L74V, M184V, L210W, T215Y K103N V35T, T39M, V60I, S68G, K122E, I135V, T200I, Q207D, R211K L187LS 
ARM804TJX ARM804TJX NRTI NNRTI M41L, T215Y  V35T, V60I, K122E, D123E, I135V, I142V, I178L  
ARM827AM ARM827AM NRTI NNRTI T69D, K70R, L74V, V75T, Y115F, M184V, K219Q L100I, K103N V35T, T39M, V60I, V118I, I135V, V179VI, R211K, F214L A62G 
ARM856HJM ARM856HJM NRTI NNRTI M41L, D67N, T69D, L210W, T215Y, K219R  K20R, V35I, T39S, K43KN, E44D, V118I, K122E, D123DE, S162C, I178L, E203K, H208Y, R211K  
ARM87PBC ARM87PBC NRTI NNRTI M41L, D67N, T69D, M184V, L210W, T215Y  K20R, G45GE, K122E, D123N, E194Q  
ARM880PBM ARM880PBM NRTI NNRTI M184V  V8I, V35M, I50L, R83K, S134SC, V179VI, T200I, Q207R  
ARM896DNG ARM896DNG NRTI NNRTI M41L, D67N, T69D, K70R, L74I, V75T, M184V, T215F, K219Q V108I, Y181C, G190S K20R, V35M, T39S, K101X, V111VI, K122E, D123N, I135L, I167IV, Q174R, D177E, V179I, T200A, Q207E, D218E  
ARM908BSP ARM908BSP NRTI NNRTI D67N, T215V  V35K, T39D, T69N, Q207E, R211K  
ARM934DJT ARM934DJT NRTI NNRTI L74V, M184V K103S, G190A V35I, V60VI, Q174K, T200A  
ARN112ZSD ARN112ZSD NRTI NNRTI D67T, K70R, L74I, M184V, T215F, K219E L100I, K103N V35T, T39A, E40D, T69N, V118I, K122E, I135T, S162N, D177G, F214L, D218E  
ARN156RJE ARN156RJE NRTI NNRTI M41L, D67N, L74V, M184V, L210W, T215Y, K219KN L100I, K103N, E138K S3T, K20R, V35T, K43Q, V60I, V118I, K122E, Q207E, R211K  
ARN16ATJ ARN16ATJ NRTI NNRTI M41L, M184V, T215Y A98G, Y181C V35T, I135V, I142V, A158S, D177E, V179I, T200A, I202V, E204G  
ARN185RNW ARN185RNW NRTI NNRTI M184V L100I, K103N V35T, I135V, R211S, F214L  
ARN204SBD ARN204SBD NRTI NNRTI M41L, T215Y K101H, G190A V35M, T39A, E79D, D123E, I142T, D177AE, V179I, H208Y, R211K  
ARN227BRD ARN227BRD NRTI NNRTI A62V, M184V K103N E28A, V35T, K82R, K122E, I135T, I142V, T200A  
ARN272RLD ARN272RLD NRTI NNRTI M41L, D67N, T69D, K70R, L74V, M184V, L210W, T215Y A98G, K101E, V108I, Y181C, G190A S3C, K20R, E28A, V35T, T39E, E44D, V60I, V90I, L109I, K122E, I135V, I142V, S162N, I167V, V179I, T200A, E203K, Q207E, H208Y, R211K, K219H  
ARN27MSA ARN27MSA NRTI NNRTI M184V  D86E, V118I, I135T, S162Y, K173R, G196E, E204N, R211K, F214L L80P 
ARN311BMS ARN311BMS NRTI NNRTI D67N, T69D, K70R, V75I, T215F Y181V V35T, T39L, K49R, V60I, K64KR, V90VI, T107S, S162D, M164I, Q174R, V179I, R211T  
ARN394FGL ARN394FGL NRTI NNRTI D67N, T69D, K70R, L74V, Y115F, M184V, K219Q G190S K49R, V60I, V90I, K101A, K122E, I135V, T139K, S162D, K166R, E169A, V179I, T200A, R211K  
ARN397RLR ARN397RLR NRTI NNRTI M41L, D67N, T69D, V75M, L210W, T215Y K101E, Y181C, G190S K20R, V21I, V35I, T39K, K43E, K49R, V60I, V118I, D123E, I135V, T139I, D177E, E203K, Q207E, H208Y, R211K  
ARN429AED ARN429AED NRTI NNRTI M184V  V21I, V35T, T39A, V60I, I135V, Q174K, N175Y, G196E, T200A, Q207E  
ARN48HSA ARN48HSA NRTI NNRTI M41L, T215D K101E, V106I, G190S E6K, K20R, V35K, T39A, K49R, E53D, V60I, W88C, K122E, S162Y, L210S, R211A  
ARN53BKV ARN53BKV NRTI NNRTI D67N, M184V, T215F, K219Q K101P, K103S V60I, K122E, D123E, I135T, I142V, S162Y, T200A, D218E  
ARN554BAA ARN554BAA NRTI NNRTI A62V, K65R, K70T, V75I, F77L, F116Y, Q151M, M184V L100I, K103N V35I, S68G, T69K, I135L, I195L, T200A, I202IV  
ARN567GM ARN567GM NRTI NNRTI D67N, K70R, K219Q  P1L, E28K, K32E, K64Y, A98S, F214FL  
ARN571EAE ARN571EAE NRTI NNRTI K70R, M184V K103N, V106M V35R, T39A, I142T, D177E, V179I, E194T, G196E, F214L  
ARN615CFG ARN615CFG NRTI NNRTI M41L, T69D, L210W, T215Y  V35T, T39A, E44D, V60I, V118I, K122E, I135V, I142V, S162T  
ARN616SAA ARN616SAA NRTI NNRTI   V35T, T39L, V60I, R211K  
ARN815QLS ARN815QLS NRTI NNRTI M41L, T69S_SG, L210W, T215Y  V35L, E53D, W88C, D123E, S162Y  
ARN926MRD ARN926MRD NRTI NNRTI M184V E138A E40D, E44K, G45E, V60I, I135V, S162C, F171L, T200E, R211T A98T 
ARN945LNM ARN945LNM NRTI NNRTI D67N, T69D, K70R, M184V, K219Q  D123E, I135V, D177E, Q197P, T200A, Q207K, F214L  
ARN972MID ARN972MID NRTI NNRTI D67N, T69D, T215V, K219Q K101P, K103N, V106I V90I, K122E, D123E, I135V, K166R, D177E, G196E, I202V, E204D, Q207H  
ARO26PJ ARO26PJ NRTI NNRTI M41L, D67~, T69G, M184V, L210W, T215Y, K219E K103N, V108I K20R, V35M, T39A, V60I, D123E, I178L, V179I, T200A, Q207E  
ARO45GNJ ARO45GNJ NRTI NNRTI M41L, D67N, M184V, T215Y K103N L34I, V35T, V60I, T69E, I178L, I195L