Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Aulicino (2011)
Title Longitudinal analysis of HIV-1 BF1 recombinant strains in vertically infected children from Argentina reveals a decrease in CRF12_BF pol gene mosaic patterns and high diversity of BF unique recombinant forms.
Citation Infect Genet Evol
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 194
NumPts 194
Subtype CRF12_BF, B + F, F, B, D

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 194 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
2133-L458JCD 2133-L458JCD PI  I54V, V82A, L90M  L10I, T12E, I15V, K20I, E35N, M36I, R41K, R57K, D60E, Q61N, I62V, L63P, A71T  
3005-M993MNY 3005-M993MNY PI    G17E, E35D, M36I, R41K, R57K, D60E, Q61D, L63C  
3006-M668AS 3006-M668AS PI  M46L  T12Q, K14R, I15V, M36I, R41K, K43R, Q61N, L63P, I72V, Q92T  
310-N260ABE 310-N260ABE PI    T12S, I15V, K20R, E35D, M36I, R41K, R57K, D60E, Q61E, L63P, I72T, I93L  
3121-O269FJN 3121-O269FJN PI    T12E, K14R, I15V, G16E, K20M, E35D, M36I, R41K, R57K, Q61N, I72S, L89M  
3144-N263SNM 3144-N263SNM PI  I54V, V82A, L90M  L10V, I15V, L19I, K20R, E35D, M36I, R41K, R57K, Q61N, I62V, L63P, A71V, I72T, T74S, I93L  
322-N783QMM 322-N783QMM PI    T12I, E35D, M36I, R41K, Q61N, L63S  
3225-O153AGL 3225-O153AGL PI  D30N, L90M K20T, N88D T12A, K14R, E35D, M36I, N37D, R41N, R57K, Q61N, L63P, T74S, V77I, I93L  
326-M430DCM 326-M430DCM PI  D30N K20T, N88D T12E, I15V, L19R, E35D, M36I, R41K, K43S, R57K, Q61N, L63P, T74S  
3282-N105OBM 3282-N105OBM PI    I15V, E35D, M36I, R41K, R57K, Q61D  
3343-N414ML 3343-N414ML PI  D30N K20T, N88D L10I, I15V, E35N, M36I, R41K, R57K, D60E, Q61D, L63P, V77I, I93L  
3428-M519TGY 3428-M519TGY PI    L10V, I15V, L19I, E35D, M36I, R41K, R57K, Q61D  
3449-M959LPF 3449-M959LPF PI    E35D, M36I, R41K, R57K, Q61N, L89M, I93L  
3516-L418FPF 3516-L418FPF PI  D30N K20T, N88D K14R, I15V, E35D, M36I, R41K, R57K, Q61N, V82I, L90F, I93L  
3613-N342EYS 3613-N342EYS PI    K14R, I15V, E35D, M36I, R41K, R57K, Q61D  
3947-L568GJL 3947-L568GJL PI    L10V, I15V, Q18L, E35D, M36I, R41K, R57K, Q61D, I72T  
4153-N651CMN 4153-N651CMN PI    K14R, I15V, E35D, M36I, R41K, R57K, Q61N, L63A, H69Q  
4184-N131SNC 4184-N131SNC PI  L90M K20T I15V, E35D, M36I, R41K, R57K, Q61N, V82I, I93L  
4290-M795MV 4290-M795MV PI  L90M K20T T12P, I15V, E35D, M36I, R41K, R57K, Q61S, L63P, I93L  
4339-O131MJL 4339-O131MJL PI  D30N K20T T12P, K14R, E35D, M36I, R41K, K45Q, R57K, Q61N, L63S, T74S, I93L  
4389-M378SL 4389-M378SL PI  I54V K20T T12N, I15V, E35D, M36I, R41K, R57K, Q61N, I62IV, L63T, I66F, H69R, T74S  
4396-L592FMC 4396-L592FMC PI  M46I, I54V, V82A  L10I, I15L, L19V, K20R, E35D, M36I, R41K, K55R, R57K, Q61N, I62V, L63S  
4426-M132SV 4426-M132SV PI    L10I, I15V, E35D, M36I, R41K, R57K, D60E, Q61N, L63A, I72T, I93L  
444-O288CCR 444-O288CCR PI  D30N K20T, N88D L10I, I13V, I15V, E35N, M36I, R41K, Q61N, L63P, I72T, V77I, I93L T74M 
4532-M793GEM 4532-M793GEM PI    L10I, I15V, E35D, M36I, R41K, R57K, D60E, Q61D, L63T, I72T, I93L  
4776-O263FSA 4776-O263FSA PI  M46I, I54V, V82A, I84V  L10V, I15V, K20R, E35D, M36I, N37D, R41K, K55R, R57K, D60E, Q61D, L63P  
59-O184CME 59-O184CME PI    I15V, K20M, E35D, M36I, R41K, R57K, Q61D, A71T, I72T, I93L  
662-N701DLC 662-N701DLC PI  L90M K20T K14R, I15V, L19V, E35D, M36I, R41K, R57K, Q61N, I62V, A71T, T74S, Q92K, I93L  
96-N422ELE 96-N422ELE PI    T12D, I15V, L19I, K20R, M36I, R41K, K55R, R57K, Q61D, I72T, L89I  
ARK870VIE ARK870VIE PI    K14R, I15V, E35D, M36I, R41K, Q61N  
ARK883PAI ARK883PAI PI    I15V, M36I, R41K, R57K, Q61N, I64IV, I93IL  
ARK916CJ ARK916CJ PI  V82F, L90M L33F T12E, I13V, K14IV, I15V, K20Q, E35N, M36I, R41K, R57K, Q61N, I62IV, I64V, H69R  
ARL119CL ARL119CL PI  M46I, I54V, L76V, V82A F53FL L10I, K20R, E35D, M36I, R41K, K55R, R57K, Q61N, I62IV, L63P, A71V, I72V, I93L  
ARL162MJM ARL162MJM PI  M46L, I54V, V82A, L90M  L10I, I15V, K20I, E35D, M36I, N37D, R41K, K55R, R57K, Q61N, L63P, A71V, I72T, T74S, I85V, I93L W42W* 
ARL374OMF ARL374OMF PI  M46I, I54A, V82S Q58E L10I, T12K, I15V, L19I, K20R, E35D, M36I, N37E, K55R, Q61N, L63S, I66L, A71V, I72T, I93L  
ARL388RAE ARL388RAE PI    L10I, T12I, I13V, K20R, E35D, M36I, R41K, R57K, Q61N, L89M, I93L  
ARL411LCO ARL411LCO PI  D30N K20T, N88D L10Y, I13V, I15V, E35D, M36I, N37D, R41K, K43R, R57K, Q61N, L63H, I72V, V75I  
ARL449AMA ARL449AMA PI  M46I, I54V, V82S L24I, K43T L10I, I15V, K20R, E35D, M36I, R41RK, K55R, Q61N, L63P, T74S, Q92K  
ARL550FAN ARL550FAN PI  I54V, V82A, L90M Q58E L10I, I15V, Q18E, E35D, M36L, L38W, R41K, R57K, Q61N, I62V, L63P, A71V, I93L I50T 
ARL589CJA ARL589CJA PI  M46L, I54V, L76V, V82F, L90M K20T, L33F, G73A, L89V L10V, I13V, K14R, I15V, G17E, E35N, M36I, R57K, Q61D, L63P, A71V, I93L  
ARL613ADS ARL613ADS PI  D30N L10F, K20T, N88D I15V, E35D, M36I, R41K, R57K, Q61N, I62V, L63P, G68E, T74S, I93L  
ARL622bisBCN ARL622bisBCN PI  I54V, V82A N83D L10V, I15V, G16E, K20R, E35D, M36I, N37D, R41K, R57K, Q61N, I72R, L89I, I93L  
ARL636VSQ ARL636VSQ PI  M46I, I47V, I54V, V82A L24I, L33F, K43T, F53L, Q58E L10V, G16A, K20R, E35D, M36I, R41K, K55R, R57K, D60E, Q61D, I62V, L63P, A71V, I93L  
ARL651DGA ARL651DGA PI    K45R, I64V  
ARL684CJM ARL684CJM PI  I54V, V82A L24I, K43T L10I, I15V, K20R, E35D, M36I, R41K, R57K, Q61N, I62V, L63P, A71T, I72M, T74S  
ARL692LLN ARL692LLN PI  L90M K20T L10I, E35D, M36I, N37D, I62V, L63P, A71T, T74S, V77I, I93L  
ARL733GAM ARL733GAM PI  M46I, I50L, V82A F53L, Q58E L10V, I15V, G16E, K20R, E35D, M36I, P39S, R41K, K55R, R57K, Q61D, I62V, L63H, A71IV, I72V  
ARL908RAB ARL908RAB PI  I47V, G48V, I54S, V82S L33F, F53FL, Q58E L10I, I13V, G16E, K20R, E35D, M36I, R41K, R57K, Q61N, L63T, E65D, H69Y, A71V, I72T, L89M, I93L  
ARL955GLD ARL955GLD PI  V32I, M46I, I47V, I54L, V82A, L90M L33LF, F53L L10I, T12V, G16E, K20R, R41K, R57K, Q61N, A71V, I72R M36D, N37I_D 
ARM144EJA ARM144EJA PI  M46L  K14KR, I15V, K20I, E35D, M36I, R41K, R57K, Q61DN, L63P, E65D, T74S, L89M  
ARM257FLA ARM257FLA PI  V32I, M46I, I47A, V82A, L90M  L10V, T12N, I15V, K20R, E35D, M36I, R41K, K55H, R57K, Q61N, L63P, A71V, I93L  
ARM288VRG ARM288VRG PI  D30N, I54V, L90M N88D L10V, I13V, K20R, E35D, M36I, N37E, R41K, K45Q, R57K, Q61N, I62V, L63P, I72T, V77I, I93L  
ARM295FFS ARM295FFS PI  L90M  L10I, T12K, I13L, I15V, K20V, E35N, M36I, R41K, R57K, D60E, Q61D, I62V, L63P, I72V, T74S  
ARM36WMR ARM36WMR PI  M46I, I47V, I54V, V82A L24I, K43T, F53L L10V, G16X, K20R, E35D, M36I, K55R, R57K, Q61N, L63T, H69R, T74S, L89M  
ARM406DLV ARM406DLV PI  M46I, I54V, V82S  L10V, I15V, K20R, E35D, M36I, R41K, R57K, D60E, Q61D, I62V, L63P, A71V, T74S, I93L  
ARM48AN ARM48AN PI  M46L, I54V, V82A L24I, L33F, F53L, G73C T4P, L10I, L19I, K20R, E34Q, E35D, M36I, N37D, R41K, K55R, I62V, L63P, A71V, I72V, V77I  
ARM512NYN ARM512NYN PI    T12A, I15V, G16E, K20M, E35D, M36I, R41K, R57K, Q61N, I72T  
ARM522BCE ARM522BCE PI  M46I, I50V, I54V, V82A, L90M L23I, L33F, K43T, F53L, T74P L10I, I13V, K20R, E35N, M36I, K55R, R57K, Q61N, I62V, L63P, L89I  
ARM53NBE ARM53NBE PI  V32I, I84V, L90M K20T, G73S I15V, E35D, M36I, R41K, R57K, D60E, Q61D, I62V, L63P, A71V  
ARM556FYS ARM556FYS PI  I54V K20T L10V, T12K, I13V, I15V, Q18E, E35D, M36I, R41K, R57K, D60E, Q61N, I62V, L63P, A71V, T74S, Q92K  
ARM616GGW ARM616GGW PI  M46L, I54V, V82A L24I, Q58E T4TA, L10V, K20R, E35D, M36I, N37D, R41K, K55R, R57K, D60E, Q61N, I64V  
ARM640RCA ARM640RCA PI  D30N N88D L10V, T12I, I15V, G16E, E35D, M36V, N37E, R41K, K45R, R57K, Q61N, L63T, I72T, V77I, I93L  
ARM645HLA ARM645HLA PI  M46L, I54V, V82A, L90M  L10V, I15IV, K20R, E35D, M36I, R41K, R57K, Q61N, L63A, A71V, I72T, T74S, I93L  
ARM674VJ ARM674VJ PI    I15V, K20M, E35D, M36I, R41K, R57K, Q61N, L63P, C67H, H69C, I93L  
ARM730WD ARM730WD PI  I54V, V82A L24I, F53L, Q58E, N83D L10I, I15V, K20R, E35D, M36I, N37D, R41K, R57K, Q61N, L63P, A71V  
ARM757FNA ARM757FNA PI  V82A  L10V, T12I, I15V, K20R, E35D, M36I, R41K, R57K, Q61N, I72IT  
ARM798MSN ARM798MSN PI  L90M  T12I, I13V, I15V, K20V, E35D, M36I, N37E, R41K, R57K, Q61N, I62V, L63N, A71T, Q92K, I93L  
ARM804TJX ARM804TJX PI  D30N K20T, N88D T12M, I15V, E35D, M36I, R41K, K45R, R57K, Q61D, A71T, I72T, T74S, I85V  
ARM827AM ARM827AM PI  M46I, I54V, V82A, L90M F53L L10I, K20R, E35D, M36I, N37D, R41K, D60E, Q61N, I62V, L63S, I64M, A71V, T74S, I93L  
ARM856HJM ARM856HJM PI  D30N, M46L, I54V, L90M N88D L10V, I13V, I15V, K20R, E35D, M36I, R41K, R57K, I62V, L63P, A71T, I72V, I93L  
ARM87PBC ARM87PBC PI  D30N K20T, G73D, N88D, L89V L10I, I13V, I15V, E35D, M36I, N37D, R41E, R57K, Q61N, I62V, L63T, T74S, I93L  
ARM880PBM ARM880PBM PI  M46I, L90M  K20M, M36V, R41K, I62V, L63P, T74S, I93L  
ARM896DNG ARM896DNG PI  M46I, I54L, L76V, V82A L24I, K43T L10I, T12P, I15V, G16E, L19P, K20R, E35D, M36I, N37D, K55R, R57K, Q61D, A71V, I72R, I93L  
ARM908BSP ARM908BSP PI  I54V, V82A  L10V, I15V, K20R, E35D, M36I, N37DE, R41K, R57K, Q61D, A71V, I72R, T74S, P79PS, I93L  
ARM934DJT ARM934DJT PI  L90M  I15V, M36I, R41K, Q61N, L63P, I72T  
ARN112ZSD ARN112ZSD PI  L90M  L10I, T12S, I15V, E35D, M36I, R41K, R57K, Q61N, I62V, I93L  
ARN156RJE ARN156RJE PI  D30N, M46I, I54V, V82A L24I, L33F, N83D, N88D L10I, K20R, E35N, M36I, N37D, R41K, K55R, R57K, Q61N, I62V, L63D, A71V, T74S I72PT 
ARN16ATJ ARN16ATJ PI    K14R, I15V, G16E, E35D, M36I, R41K, R57K, Q61N, L63C, H69Y, I72T  
ARN185RNW ARN185RNW PI  D30N N88D L10I, T12D, K20R, E35D, M36I, R41K, R57K, Q61N, L63P, I93L  
ARN204SBD ARN204SBD PI  M46MI, I47IV, I54V, V82F, L90M K20T, Q58E L10IV, I15V, G17D, E35N, M36I, R41K, K55R, R57K, D60E, Q61D, I62V, L63P, I72R, V77I, I93L  
ARN227BRD ARN227BRD PI    I15V, E35D, M36I, N37S, R41K, R57K, Q61N, L63G, I93L  
ARN272RLD ARN272RLD PI  M46L, I54V, V82T L33F, N83D L10I, T12E, E35D, M36L, R41K, K55R, R57K, Q61N, L63P, I64M, K70T, A71V, I72T, Q92K  
ARN27MSA ARN27MSA PI  D30N, L90M N88D L10I, K14R, L19I, E34EG, K45R, I62V, L63P, I72E, V77I, I93L  
ARN311BMS ARN311BMS PI  M46L, G48Q, I54V, L76V, V82A, L90M F53L, Q58E L10V, I15V, K20R, E35D, M36I, N37D, R41K, K55R, R57K, D60E, Q61N, I62V, L63P, I64V, A71V, T74S, V77I, I93L V32L 
ARN394FGL ARN394FGL PI  I54V, V82A, L90M  L10V, K20R, E35D, M36I, N37D, R41K, R57K, Q61D, I62V, L63V, A71V, I72V, T74S  
ARN397RLR ARN397RLR PI  M46L, I54L, V82T, I84V L24I, L33F, K43T E35D, M36I, N37E, R41K, R57K, D60N, Q61N, L63T, I64L, A71I, I72T, L89M, I93L  
ARN429AED ARN429AED PI  D30N N88D L10V, I15V, E35D, M36I, R41K, R57K, Q61D, L63P, V75I, L89M, I93L  
ARN48HSA ARN48HSA PI  V82A  L10V, I15V, K20R, E35D, M36I, R41K, R57K, Q61D  
ARN53BKV ARN53BKV PI  L90M  T12AP, I13V, N37D, L63P, H69K, A71V, V77I  
ARN554BAA ARN554BAA PI  M46L, I54V, V82A L24I, Q58E L10I, I15V, K20R, E35D, M36I, P39T, R41K, K55R, R57K, D60E, Q61D, L63P, I64V  
ARN567GM ARN567GM PI  I54M, V82M, L90M K20T, L33F, K43T, G73S, L89V L10I, V11I, I13V, K14R, I15V, G17E, E35N, M36I, R41K, R57K, Q61N, L63P, T74S, I93L  
ARN571EAE ARN571EAE PI   K20T L10V, I13V, K14N, I15V, E35D, M36I, R41K, R57K, Q61N, E65D, A71T, T74S, Q92K  
ARN615CFG ARN615CFG PI  I54V, L90M L23IV, F53L, G73S L10I, I13V, K20R, E35D, M36I, N37T, R41K, R57K, D60E, Q61N, L63P, H69HY, A71IV, V77I, V82VI, I93L  
ARN616SAA ARN616SAA PI    I15V, E35D, M36I, R41K, R57K, Q61N  
ARN815QLS ARN815QLS PI  I54V, L90M K20T I13V, I15V, E35D, M36I, P39Q, R57K, Q61N, L63P, A71T, V82I, L89I, Q92K, I93L  
ARN926MRD ARN926MRD PI  D30N N88D L10V, T12I, I15V, E35N, M36I, N37D, R41K, K45R, R57K, Q61N, L63V, A71V, I72T K20A 
ARN945LNM ARN945LNM PI  I54V, V82A, L90M  K20R, E35D, M36I, N37E, D60E, I62V, L63P, A71I, I93L  
ARN972MID ARN972MID PI    T12P, K14R, L63P, I72T, V77I, I93L  
ARO26PJ ARO26PJ PI  M46L, G48V, I54V, V82A Q58E L10I, K14R, I15V, G16E, K20R, E35D, M36I, P39S, R41K, R57K, Q61N, I62V, L63T, E65D, I72V  
ARO45GNJ ARO45GNJ PI  M46L, I54V, V82A  L10I, I15V, K20R, E35D, M36I, R41K, R57K, Q61N, L63A, I93L  

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