Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Chen (2013)
Title HIV-1 genotypes and drug resistance threshold survey in Honghe Prefecture of Yunnan Province in 2011
Citation Direct Genbank Submission
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 41
NumPts 41
Subtype CRF08_BC, CRF07_BC, CRF01_AE, B + C

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
11YNHH002 11YNHH002 None None   K20R, V35M, E36A, T39D, S48T, V60I, K101R, D121Y, K122E, I135IV, K166KR, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
11YNHH003 11YNHH003 None None  V179D V8I, K20KR, V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, D177E, T200I, Q207E, R211K, V245EQ, A272P, T286A, A288G, E291D, V292I, I293V  
11YNHH005 11YNHH005 None None   V35T, E36A, T39D, S48E, E53D, V60I, T69S, I135V, Q174H, D177E, I202V, Q207E, R211K, V245Q, A272P, K275R, K277R, E291D, V292I  
11YNHH006 11YNHH006 None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, D123E, I135V, S162C, Q207G, R211K, V245Q, A272P, K277R, E291D, V292I, I293V  
11YNHH007 11YNHH007 None None A62V  V35T, E36A, T39D, S48T, E53D, V60I, T69N, S162C, Q174H, T200A, I202V, Q207E, R211K, V245Q, E248Q, A272P, K277R, E291D, V292I, I293V  
11YNHH008 11YNHH008 None None   V35T, E36A, T39D, S48T, E53D, V60I, V90I, I135V, I178V, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I, I293V  
11YNHH009 11YNHH009 None None   V35T, E36A, T39D, S48E, E53D, V60I, T69S, V90VI, K101KR, I135V, S162C, V179VI, T200TA, I202V, Q207E, R211K, V245Q, A272P, K277R, T286V, V292I, I293V  
11YNHH011 11YNHH011 None None   V8I, V35K, E36A, T39D, S48T, V60I, D123E, S134SN, I135V, S162C, D177EG, I178IM, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
11YNHH016 11YNHH016 None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, D123DE, I135V, I195IT, E204EK, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I, I293V  
11YNHH019 11YNHH019 None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, S162C, T200A, I202V, Q207EG, R211RK, V245Q, A272P, K277R, T286A, A288T, V292I, I293V  
11YNHH021 11YNHH021 None None   V35T, T39K, S48T, E53D, V60I, D123E, I135V, I178L, Q207E, R211K, V245Q, A272P, K275R, K277R, T286A, E291D, V292I, I293V  
11YNHH022 11YNHH022 None None   V8I, K20R, V21VI, V35T, T39E, S48T, V60I, D121HY, K122E, D123DE, I135T, Q174R, T200A, Q207QE, R211RK, I244V, V245Q, A272P, T286V, V292I, I293V  
11YNHH024 11YNHH024 None None   V35T, E36A, T39D, S48T, E53D, V60I, K101R, I135V, S162C, V179I, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
11YNHH027 11YNHH027 None None  V179DN L34LI, V35T, S48T, E53D, V60I, K122KE, I135IV, S162CY, Q207E, R211K, V245Q, E248Q, A272P, K277R, E291D, V292I, I293V  
11YNHH028 11YNHH028 None None   E6D, K11T, V35T, T39K, K122E, D123S, S162C, K173I, Q174K, D177E, I178M, I195V, K201R, Q207N, R211S, K238R, V245E, A272P, E291D, V292I, I293V  
11YNHH031 11YNHH031 None None A62V  V35T, E36A, T39D, S48T, E53D, V60I, T69N, S162C, Q174H, I202V, Q207E, V245Q, A272P, K277R, R284K, E291D, V292I, I293V  
11YNHH033 11YNHH033 None None   V35T, T39DN, S48T, E53D, V60I, T69S, K122E, D123DN, S162C, E169D, Q174S, I202V, Q207A, R211K, V245Q, A272P, K277R, V292I, I293V  
11YNHH034 11YNHH034 None None   V35T, E36EK, T39D, S48T, V60I, K122E, I135T, P170PS, V245Q, A272P, V276T, K277R, V292I, I293V L26LS 
11YNHH037 11YNHH037 None None A62V  V35T, E36A, T39D, S48T, E53D, V60I, T69N, I135V, S162C, E169EK, Q207E, R211K, K238R, V245Q, A272P, E291D, V292I, I293V, E297A  
11YNHH039 11YNHH039 None None   V35T, E36A, T39E, S48T, E53D, V60I, K102Q, K122E, I135V, S162C, Q207E, R211K, V245Q, A272P, E291D, V292I, I293V  
11YNHH040 11YNHH040 None None   E6D, K11T, V35T, T39N, K122E, D123S, S162C, K173I, Q174K, D177E, Q207G, L210F, R211S, K238R, V245E, T286A, E291D, V292I, I293V  
11YNHH046 11YNHH046 None None   V8I, V35T, E36A, T39D, S48T, E53D, V60I, D121H, K122E, K166R, P176PL, T200AE, R211RK, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
11YNHH049 11YNHH049 None None  V179D V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I, I293V  
11YNHH050 11YNHH050 None None   E6D, K11T, V35I, T39N, K122E, D123S, I135T, S162C, K173I, Q174K, D177E, I178IM, V179I, T200A, Q207S, R211S, K238R, V245E, A272G, K277R, T286A, E291D, V292I, I293V T216TA 
11YNHH067 11YNHH067 None None   E6D, K11T, V35T, T39D, K122E, D123N, S162C, K173R, Q174E, T200A, Q207N, K238R, V245E, A272P, K281R, T286A, E291D, V292I, I293V  
11YNHH081 11YNHH081 None None   E6A, V35T, E36A, T39E, S48T, E53D, V60I, I135V, S162C, V245Q, D250DN, A272P, K277R, T286A, V292I, I293V  
11YNHH082 11YNHH082 None None   K32R, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T165I, V245M, A272P, K277R, T286A, V292I, I293V  
11YNHH085 11YNHH085 None None A62V  E6D, V35T, E36A, T39DN, S48T, E53D, V60I, T69N, I135IMV, S162C, Q174E, Q207E, V245Q, A272P, K281R, T286A, V292I, I293V  
11YNHH086 11YNHH086 None None   E6D, V8I, E28D, V35T, E36A, T39E, S48AT, V60I, I135T, T200I, Q207D, R211K, V245Q, S251N, A272P, V276T, K277R, T286A, I293V  
11YNHH089 11YNHH089 None None   K20R, V35T, E36A, T39DE, S48T, E53D, V60I, T69S, I135V, S162C, I178L, Q207E, R211RK, V245Q, A272P, K277R, E291D, V292I, I293V  
11YNHH090 11YNHH090 None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, I202V, Q207E, R211K, V245Q, D250N, A272P, K277R, T286A, A288T, V292I, I293V  
11YNHH091 11YNHH091 None None  V106I E6N, V8I, K11T, V21I, V35T, T39K, K43E, V60I, K122E, D123S, I135AV, K173I, Q174K, D177E, I178M, Q207A, R211S, V245E, K277R, L283I, T286A, E291D, V292I, I293V  
11YNHH096 11YNHH096 None None  V179D V35T, E36A, T39D, S48T, V60I, K102R, D123E, I135V, S162C, Q207E, R211K, F214FL, V245Q, A272P, K277KR, T286A, V292I  
11YNHH097 11YNHH097 None None   V35T, E36A, T39D, G45E, S48T, V60I, V90I, Q207E, R211K, V241I, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
11YNHH100 11YNHH100 None None   V35T, E36A, T39D, S48T, V60I, D121H, K122E, I135T, K166R, Q207H, R211K, V245Q, E248D, A272P, K277R, K287R, V292I, I293V W239W* 
11YNHH107 11YNHH107 None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, D177E, I178M, T200A, Q207E, R211K, V245Q, A272P, K277R, Q278K, T286A, E291D, V292I, I293V  
11YNHH110 11YNHH110 None None   E6D, K11R, V35T, T69S, K122E, D123S, S162C, K173V, Q174K, D177E, Q207N, R211S, K238R, V245E, E248EK, A272P, T286A, V292I, I293V  
11YNHH118 11YNHH118 None None   K20R, E28K, K32E, V35T, E36A, T39D, S48T, E53D, V60I, T69S, I135V, S162C, I178L, Q207E, V245Q, A272P, K277R, E291D, V292I, I293V  
11YNHH124 11YNHH124 None None   K20KR, V35T, E36A, T39D, S48T, E53D, V60I, T69S, I135V, S162C, Q174H, T200A, Q207E, R211K, V245Q, A272P, K277R, V292I, I293V  
11YNHH131 11YNHH131 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, Q197K, V245Q, E248V, K249Q, A272P, K277R, T286A, E291D, V292I, I293V  
11YNHH134 11YNHH134 None None   E6D, K11T, V35T, T39K, K43E, D121H, K122E, D123S, I135V, S162C, K173S, Q174K, D177E, E203D, Q207A, R211S, K238R, I244V, V245E, E291D, V292I, I293V  

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