Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Rolland (2012)
Title Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2
Citation Nature
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 121
NumPts 121
Subtype CRF01_AE, B, CRF02_AG

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 121 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
AA001a12L AA001a12L None    K7Q, E11D, A21T, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
AA002a_LH13 AA002a_LH13 None    K14R, V31I, S39N, D41N, I72V, L74M, T112V, T124A, T125A, G134N, I135V, K136Q, I141V, K160Q, D167E, R187K, V201I, L234I, V249I, D279A, S283G, R284G, D286N  
AA003b12L AA003b12L None    K14R, A21T, V31I, I72V, I84V, T112V, T124A, T125A, G134N, I135V, K136R, M154I, V165I, D167E, V201I, L234I, S283G  
AA004a_wg1 AA004a_wg1 None    K14R, A21T, L45Q, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, I208L, L234I, S283G  
AA005a06L AA005a06L None    K14R, A21T, V31I, M50L, I72V, Q95H, T112V, I113V, T124A, T125A, G134N, V165I, V201I, L234I, S283G  
AA006a03 AA006a03 None    E11D, K14R, A21T, V31I, V32I, S39N, T112V, T124N, T125A, G134N, I135V, K136R, D167E, V201I, I203M, L234I, S283G  
AA007a_WG14 AA007a_WG14 None    K14R, A21T, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, V201I, L234I, S283G  
AA008a_LH15 AA008a_LH15 None    K14R, A21T, A23V, V31I, S39N, L45V, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, K188R, V201I, I203M, L234I, S283G  
AA009b03L AA009b03L None    K14R, A21T, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, V165I, V201I, I203M, L234I, S283G  
AA010a_WG11 AA010a_WG11 None   E157Q S17N, L101I, T112I, D116DG, K160Q, V201I, S230N, D253E, D256E  
AA011a09L AA011a09L None    E11D, K14R, R20K, L28I, V31I, M50I, K111T, T125V, K211R, L234I, D253E E212E_GERIVDIIA 
AA012a_LH8 AA012a_LH8 None    K14R, A21T, A23V, V31I, S39N, I72V, T112V, T124Q, T125A, K127R, G134N, I135V, D167E, V201I, K211R, L234I, S283G  
AA013a05 AA013a05 None    K14R, M50L, T112V, T124A, T125A, V126L, I135V, K136R, G163E, D167E, V201I, L234I, D253DG, S283G  
AA014a02L AA014a02L None    K14R, A21T, V31I, I72V, T112V, T124A, T125A, V126L, G134N, I135V, K136R, G163E, V201I, L234I  
AA015a_LH1 AA015a_LH1 None    E11D, E13D, K14R, A21T, V31I, S39N, I72V, L101I, T112V, T124A, T125A, G134N, I135V, V165I, D167E, V201I, L234I, S283G  
AA016a05L AA016a05L None    K14R, A21T, V31I, S39N, I72V, T112V, S119P, T124A, T125A, V126L, G134N, I135V, K136Q, D167E, V201I, L234I, V259I, S283G  
AA017a_wg4 AA017a_wg4 None    E11D, K14R, A21T, S39N, L45Q, M50L, I72V, G106A, T112V, T124A, T125A, V126L, G134N, I135V, K136R, D167E, V201I, L234I, D279G  
AA018a05L AA018a05L None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, K127R, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
AA019a_WG2 AA019a_WG2 None    K14R, A21T, V54I, I72V, L101I, T112V, T124A, T125V, G134N, I135V, K136R, D167E, V201I, L234V, S283G  
AA020a_wg2 AA020a_wg2 None    A21T, S39N, I72V, Q95S, T112V, T124G, T125A, K127R, G134N, I135V, K136R, D167E, V201I, I208M, L234I, S283G  
AA021a06L AA021a06L None    K14R, A21T, D25E, S39N, L45V, L101I, T112V, T124A, T125A, G134N, I135V, K136R, M154I, D167E, V201I, Q216N, L234I, S283G  
AA022a_LH7 AA022a_LH7 None    E11D, K14R, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, K160R, D167E, V201I, I208M, L234I, S283G  
AA023a11L AA023a11L None    K14R, A21T, A23V, V31I, S39N, I72V, T112V, T125A, V126L, K127R, G134N, I135V, K136R, V201I, L234I, S283G  
AA024a08 AA024a08 None    K14R, S17N, L28I, S39N, L45V, L101I, T112V, T124A, T125A, G134N, I135V, K136R, G163E, D167E, V201I, K211R, L234I, S283G  
AA025a_WG9 AA025a_WG9 None    E11D, S39C, L101I, Q164K, G193E, V201I, L234I, D279G, S283G  
AA026a01L AA026a01L None    S17N, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
AA027a_wg2a AA027a_wg2a None    E11D, A21T, S24G, V31I, S39N, I72V, T112V, T125A, G134N, I135V, K136Q, D167E, K188R, V201I, L234I, S283G  
AA028a_wg9 AA028a_wg9 None    E11D, K14R, A21T, A23V, V31I, I72V, T112V, T124A, T125A, V126L, G134N, I135V, K136R, V151VI, D167E, V201I, L234I  
AA029b02L AA029b02L None    K14R, A21T, I72V, T112V, T124A, T125A, G134N, I135V, K136R, M154I, D167E, V201I, K211R, T218S, L234I  
AA030a12 AA030a12 None    K14R, A21T, V31I, S39N, L45V, T112V, T124A, T125A, G134N, K136R, V201I, L234I, I268L, S283G  
AA031a_LH2 AA031a_LH2 None    K14R, A21T, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S255N, S283G  
AA032a05 AA032a05 None    K14R, A21T, V31I, V32I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, V165I, V201I, S230N, L234I G106GE 
AA033a_wg4a AA033a_wg4a None    E11D, K14R, A21T, T112V, T124A, T125A, G134N, K136Q, D167E, V201I, L234I, S283G  
AA034a_wg4 AA034a_wg4 None    K14R, A21T, A23V, V31I, S39N, I72V, Y99H, L101V, T112V, T124G, T125P, G134N, K136R, V165I, D167E, V201I, L234I, S283G  
AA035a03L AA035a03L None    E11D, K14R, A21T, A23V, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, V165I, D167E, V201I, L234I  
AA036a05L AA036a05L None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, V126L, G134N, I135V, K136R, V165I, A196P, L234I, E246G, V281M, S283G A128S 
AA037a_wg1 AA037a_wg1 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, V126L, K127R, G134N, I135V, D167E, V201I, L234I, S283G  
AA038a_WG3 AA038a_WG3 None    K14R, A21T, V31I, I72V, L74I, Q95N, T112V, T124A, T125A, G134N, K136Q, D167E, H171Q, V201I, L234I, P261S, S283G, Q285P  
AA039a07L AA039a07L None    K14R, S17N, S39C, L101I, T112I, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I  
AA040a_WG13 AA040a_WG13 None  E138K T97A G70E, L101I, S119R, T124N, T125S, M154I, K211R  
AA041a01L AA041a01L None    E11D, A21T, V31I, S39H, I72V, T112V, T124A, T125A, G134D, I135V, M154I, E157D, D167E, V201I, L234I, S283G  
AA042a07L AA042a07L None    E11D, A21T, V31I, S39N, I72V, L74I, T112V, T125A, V126L, G134N, I135V, K136Q, G163E, V201I, L234I, S255N  
AA044a_LH20 AA044a_LH20 None    E11D, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, I203M, L234I, S283D  
AA045a01L AA045a01L None    K14R, A21T, N27S, V31I, S39N, M50I, I72V, T112V, T124A, T125A, G134N, I135V, V165I, D167E, V201I, L234I, S283G  
AA048b12L AA048b12L None    E11D, K14R, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, I220L, L234I, S283G  
AA049a_WG11 AA049a_WG11 None    K14R, A21T, V31I, S39N, I72V, T112V, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
AA050a_WG2 AA050a_WG2 None    K14R, A21T, V31I, V32I, I72V, Q95H, T112V, T124A, T125A, G134N, K136Q, M154MT, D167E, V201I, L234I, S283G  
AA051b03L AA051b03L None    K14R, A21T, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, V201I, L234I, S283G  
AA052a01 AA052a01 None    K14R, A21T, S39N, I72V, T112V, T124A, T125A, G134N, I135V, D167E, V201I, I203V, L234I, D279X, A282X, S283G C280~, V281~ 
AA054a04 AA054a04 None    K14R, A21T, V31I, I72V, I84V, T112V, T124A, T125A, G134N, I135V, K136R, M154I, V165I, D167E, V201I, L234I, Q252K, V259I, S283G  
AA055a_WG3 AA055a_WG3 None    E11D, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G E212E_LQKQITKIR 
AA056a_WG6 AA056a_WG6 None    E11D, K14R, A21T, V31I, I72V, L101I, T112V, T125A, G134N, I135V, K136R, M154I, D167E, V201I, K215N, L234I, V281M, S283G  
AA057a07L AA057a07L None    E11D, K14R, A21T, A23V, V31I, D41N, L63V, I72V, T112V, T124A, T125A, G134N, K136Q, V165I, D167E, V201I, L234I, S283G  
AA058a02L AA058a02L None    E11D, K14R, A21T, V31I, S39N, M50L, I72V, E96D, T112V, I113V, T124N, T125A, G134K, K136R, D167E, V201I, L234I, D256E, S283G  
AA059a_WG3 AA059a_WG3 None    E11D, K14R, A21T, V31I, L45V, M50I, I72V, T112V, T124A, T125A, G134N, K136R, M154I, V165I, D167E, R187K, V201I, L234I, S283G  
AA060a_WG8 AA060a_WG8 None    K14R, A21T, S39N, L68I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, S153A, D167E, V201I, K211R, L234I, S283G, R284G  
AA061a10L AA061a10L None    K14R, V31I, I72V, Y99H, L101I, T112V, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
AA062b03L AA062b03L None    K7R, K14R, A21T, S39N, L45Q, I72V, G94A, L101V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, V201I, K215R, T218S, L234I, S283G  
AA063a_WG35 AA063a_WG35 None    E11D, K14R, A21T, A23V, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, K211R, L234I, N254S, S255G, S283G R166RS 
AA064a_WG4 AA064a_WG4 None    E11D, A21T, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, V259I, V281M, S283G  
AA065a07L AA065a07L None    D3N, K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, D167E, V201I, L234I, S283G  
AA066a07L AA066a07L None    K14R, R20K, M22L, S39N, I72V, L101V, T112V, T125A, G134N, I135V, K136R, D167E, G189X, V201I, L234I, S283G  
AA067a_WG13 AA067a_WG13 None    K14R, F26Y, S39N, L63V, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V151I, D167E, H171Y, K173R, V201I, K211R, L234I, S283G  
AA068a_23 AA068a_23 None    E11D, A21T, V31I, V32I, I72V, T112V, T125A, K127R, G134N, I135V, K136Q, V165I, V201I, L234I, S283G  
AA069a02L AA069a02L None    K14R, R20K, V31I, L101I, T112V, T124N, G134N, I135V, K136R, G163E, V201I, T218S, I220L, L234I, S283G  
AA070a_LH07 AA070a_LH07 None    K14R, A21T, V31I, S39N, I72V, Q95H, K103R, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, R187K, V201I, T206S, L234I, S283G  
AA072a05 AA072a05 None    K14R, V31I, V32I, I72V, L101I, T112V, T124N, G134N, I135V, M154I, V165I, D167E, G189X, I191V, V201I, L234I, S283G  
AA073a_LH5 AA073a_LH5 None    S17N, V31I, I72V, K111Q, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, T206S, L234I, S283G  
AA074a01L AA074a01L None    K14R, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
AA075a_WG2 AA075a_WG2 None    E11D, K14R, A21T, V31I, S39N, I72V, Q95H, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, I204L, K211R, L234I, S283G  
AA076a01L AA076a01L None    K14R, A21T, A23V, V31I, S39N, D55N, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136R, V201I, L234I  
AA077a_LH33 AA077a_LH33 None    K14R, A21T, V32I, S39N, I72V, L101I, T112V, T125A, G134N, I135V, K136R, E152K, D167E, V201I, L234V, S283G  
AA078a06L AA078a06L None    E11D, A21T, V31I, S39N, I72V, T112V, T125A, G134N, I135V, K136Q, L158I, D167E, V201I, L234V, S283G  
AA079a_WG1 AA079a_WG1 None    K14R, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V201I, L234I, S283G  
AA080a13L AA080a13L None    K14R, A21T, D25E, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
AA081a_01L AA081a_01L None    K14R, A21T, A23V, D25E, S39N, M50I, I72V, L101V, T112V, T124A, T125A, G134N, I135V, K136R, I141T, D167E, V201I, K215R, L234I, S283G  
AA082a_WG9 AA082a_WG9 None    K14R, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, K160R, D167E, R187K, V201I, I220L, L234I, I268L, S283G  
AA083a10L AA083a10L None    K14R, A21T, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
AA084a_wg4 AA084a_wg4 None    K14R, S39N, I72V, Q95H, T112V, I113V, T124A, T125A, G134N, K136Q, V165I, D167E, V201I, L234I, I251IV, P261S, S283G  
AA085a_wg10 AA085a_wg10 None    K14R, A21T, A23V, V31I, S39N, M50I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, K160R, D167E, V201I, L234I, D253E, S283G  
AA086a02L AA086a02L None    E11D, K14R, A21T, V31I, S39N, I72V, T112V, T125A, G134N, I135V, K136R, D167E, V201I, T206S, L234I, S283G  
AA088a_wg12 AA088a_wg12 None    K14R, A21T, V31I, I72V, T112V, T124N, T125A, G134N, I135V, K136R, V165I, D167E, V201I, L234I, S283G  
AA089a01 AA089a01 None    K14R, V31I, I72V, T112V, I113V, T124A, T125A, G134N, I135V, K136R, G193D, S195C, V201I, L234I  
AA090a_WG5 AA090a_WG5 None    K14R, A21T, S39N, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G R107K, N144ND 
AA091a03L AA091a03L None    K14R, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, M154I, V165I, D167E, I191L, V201I, L234I, S283G  
AA092b06L AA092b06L None    E11D, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, V151I, D167E, V201I, L234I, S283G, R284G  
AA093a_LH9 AA093a_LH9 None    S17C, A91T, S119R, T124N, T125A, V165I, K211R, D256E, A265V  
AA094b09L AA094b09L None    E11D, K14R, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, K273KN, S283G  
AA095a_WG22 AA095a_WG22 None   T97A E11D, K14R, A21T, A23V, V31I, K46Q, I72V, T112V, T124A, T125A, V126M, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
AA096a_WG8 AA096a_WG8 None    E11D, K14R, A21T, A23V, V31I, I72V, I73V, T112V, T124A, T125A, V126M, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
AA097a01L AA097a01L None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, T206S, L234I, S283G  
AA098a02L AA098a02L None    E10D, K14R, A21T, A23V, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
AA099a_WG10 AA099a_WG10 None  S147SG  K14R, L28I, I72V, L101V, T112V, T124A, T125A, G134N, I135V, K136H, V150A, V165I, V201I, K215N, L234I, D253H, S283G  
AA100b07L AA100b07L None    K14R, A21T, V31I, S39N, I72V, T112V, T125A, G134N, I135V, K136R, D167E, H171Q, V201I, L234I, S283G  
AA101a_WG1 AA101a_WG1 None    K14R, A21T, V31I, S39N, I72V, Q95H, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, G193E, V201I, L234V, S283G, D286N  
AA102a_LH7 AA102a_LH7 None    K14R, A23V, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G, D286N  
AA103a07L AA103a07L None    K14R, A21T, S39N, L45V, I72V, T112V, T124A, T125A, G134N, I135V, M154I, D167E, R187K, V201I, L234I, S283G  
AA104a_LH21 AA104a_LH21 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, V165I, D167E, V201I, L234I, S283G  
AA105a07L AA105a07L None    K14R, A21T, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, D279A  
AA106c02L AA106c02L None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, V126L, G134N, I135V, K136R, V165I, D167E, V201I, L234I  

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