Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Ssemwanga (2012)
Title Low drug resistance levels among drug-naive individuals with recent HIV-1 infection in a rural clinical cohort in southwestern Uganda.
Citation ARHR
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 72
NumPts 72
Subtype D, A, B, CRF35_AD, CRF05_DF, C, CRF01_AE, CRF18_cpx

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
RCC-TDR-359656 RCC-TDR-359656 None    I13V, E35D, M36I, R41K, K45R, R57K, H69K, K70R, L89M  
RCC-TDR-359822 RCC-TDR-359822 None    I13V, R41K, L63P, I64L  
RCC-TDR-359889 RCC-TDR-359889 None    I13V, K20R, M36I, R41K, G51GE, L63A, I64V W42W* 
RCC-TDR-480431 RCC-TDR-480431 None    I13V, M36I, R41K, L63P, H69Y, I72V  
RCC-TDR-483664 RCC-TDR-483664 None    I13V, M36I, R41K, I64V  
RCC-TDR-483673 RCC-TDR-483673 None    R41K, L63P, I72T, V77I, I93L  
RCC-TDR-483707 RCC-TDR-483707 None    M36I, R41K, I64V  
RCC_TDR-353759 RCC_TDR-353759 None    I13V, M36I, R41K, I62V, L63S, I64V, E65D, H69Y  
RCC_TDR-356779 RCC_TDR-356779 None    I13V, G16E, K20R, E35D, M36I, R41K, R57K, H69K, L89M  
RCC_TDR-480124 RCC_TDR-480124 None    I13V, E35D, R57K, L63P, I64V, H69Y, V77I  
RCC_TDR-480876 RCC_TDR-480876 None    M36ML, R41K, L63T, H69Y, I72IV, V77I  
RCC_TDR-481387 RCC_TDR-481387 None    I13V, K14R, K20R, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M  
RCC_TDR-482974 RCC_TDR-482974 None    L10I, I13V, M36L, R41K, H69Q, L89I  
RCC_TDR-483620 RCC_TDR-483620 None    I13V, M36I, N37D, R41K, D60E, I64V  
RCC_TDR-483634 RCC_TDR-483634 None    I13V, E35D, M36I, R41K, H69K, L89M  
RCC_TDR-820974 RCC_TDR-820974 None   Q58E I13V, K14R, L33V, R41K, I64V, E65D  
RCC_TDR_190330 RCC_TDR_190330 None    I13V, K20R, L33V, N37T, R41K, I64V, E65D  
RCC_TDR_353841 RCC_TDR_353841 None    T12R, L19V, R41K, I64V, H69Y, I72T, V77I  
RCC_TDR_355543 RCC_TDR_355543 None    I13V, K20R, E35D, M36I, R41K, R57K, L63P, H69K, L89M  
RCC_TDR_355927 RCC_TDR_355927 None    E35D, M36I, R41K, L63P, I64L  
RCC_TDR_356261 RCC_TDR_356261 None    I13V, K20R, M36I, R41K, H69K  
RCC_TDR_356789 RCC_TDR_356789 None    I13V, E35D, M36I, R41K, R57K, H69K, V77VI, L89M  
RCC_TDR_356892 RCC_TDR_356892 None    I13V, K20R, M36I, R41K, I64V  
RCC_TDR_357030 RCC_TDR_357030 None    I13V, E35D, M36I, N37E, R41K, R57K, H69K, L89M  
RCC_TDR_358027 RCC_TDR_358027 None    I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69Y, I72V  
RCC_TDR_358497 RCC_TDR_358497 None    I13V, E35D, M36I, R41K, K45R, R57K, L63S, H69K, L89M  
RCC_TDR_358561 RCC_TDR_358561 None    I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, L89M, I93V  
RCC_TDR_358745 RCC_TDR_358745 None    L10I, I13V, M36I, R41K, L63Q, I64V, I72V  
RCC_TDR_359723 RCC_TDR_359723 None    I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M  
RCC_TDR_359881 RCC_TDR_359881 None    I13V, I15V, E35D, M36I, R41K, L63T, I64V, E65D  
RCC_TDR_359885 RCC_TDR_359885 None    I13V, I15V, E35D, M36I, R41K, L63T, I64V, E65D  
RCC_TDR_359957 RCC_TDR_359957 None    T12A, L19I, E35D, M36I, R41K, Q61N, L63S, I64V, E65D, V77I  
RCC_TDR_359989 RCC_TDR_359989 None    T12I, I13V, E35D, M36I, R41K, L63M, H69K, L89M  
RCC_TDR_480009 RCC_TDR_480009 None    I15V, R41K, Q61H, I64L, K70Q  
RCC_TDR_480013 RCC_TDR_480013 None    G16E, K20R, M36I, P39L, R41K, L63Q, I64V  
RCC_TDR_480059 RCC_TDR_480059 None    I13V, K14N, E35D, M36I, R41K, D60E, L63P, C67Y, H69K, K70R, L89M  
RCC_TDR_480069 RCC_TDR_480069 None    L10V, I13V, K14R, E35D, M36I, R41K, R57K, L63A, H69K, L89M  
RCC_TDR_480117 RCC_TDR_480117 None    I13V, K14R, E35D, M36I, N37E, R41K, R57K, L63S, H69K, L89M  
RCC_TDR_480133 RCC_TDR_480133 None    I13V, K20R, L33V, N37T, R41K, I64V, E65D  
RCC_TDR_480146 RCC_TDR_480146 None    I13V, K20R, M36I, R41K, H69K  
RCC_TDR_480245 RCC_TDR_480245 None    I13V, M36I, N37D, R41K, D60E, I64V  
RCC_TDR_480611 RCC_TDR_480611 None    K14R, E35D, M36I, N37E, R41K, R57K, L63T, E65D, H69K, L89M  
RCC_TDR_480631 RCC_TDR_480631 None    I13V, L19I, M36I, R41K, Q61N, L63Q, I64V, E65D, H69Y, I72T  
RCC_TDR_480650 RCC_TDR_480650 None    M36I, R41K, L63S, I64V  
RCC_TDR_480977 RCC_TDR_480977 None    I13V, R41K, I64V  
RCC_TDR_481029 RCC_TDR_481029 None    I13V, L19I, M36I, R41K, D60E, I62V, L63P, H69Y, I72T  
RCC_TDR_481346 RCC_TDR_481346 None    K14R, L19I, M36I, R41K, L63S, I64V, E65D  
RCC_TDR_481816 RCC_TDR_481816 None    I13V, K14R, L33V, N37S, R41K, Q61S, I62V, L63H, I64V, H69Y, I72T  
RCC_TDR_482054 RCC_TDR_482054 None    I13V, K14R, K20R, E35D, M36I, R41K, R57K, H69K, L89M  
RCC_TDR_482363 RCC_TDR_482363 None    I13V, K14R, E35D, M36I, N37E, R41K, R57K, L63S, H69K, L89M  
RCC_TDR_482365 RCC_TDR_482365 None    I13V, E35D, M36I, R41K, H69K, K70R, L89M  
RCC_TDR_482400 RCC_TDR_482400 None    I13V, K14R, E35D, M36I, N37E, R41K, R57K, L63S, H69K, L89M  
RCC_TDR_482405 RCC_TDR_482405 None    T12S, I15V, L19E, M36I, N37S, R41K, L63P, H69K, L89M, I93L  
RCC_TDR_482650 RCC_TDR_482650 None    I13V, M36I, N37D, R41K, D60E, I64V  
RCC_TDR_482987 RCC_TDR_482987 None    I13V, K20R, M36I, R41K, I64V  
RCC_TDR_483429 RCC_TDR_483429 None    L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63T, E65D, H69K, K70R, L89M  
RCC_TDR_483451 RCC_TDR_483451 None    I13V, K20R, M36I, R41K, L63Q, I64V, E65D, V75I  
RCC_TDR_483488 RCC_TDR_483488 None    L10I, I13V, E35D, M36I, R41K, K45R, H69K, L89M  
RCC_TDR_483515 RCC_TDR_483515 None    I13V, L19I, M36I, R41K, Q61H, I64V, H69Y, I72T, V75I  
RCC_TDR_483540 RCC_TDR_483540 None    L19V, M36L, R41K, L63S, I64V, E65D  
RCC_TDR_483555 RCC_TDR_483555 None    G16E, K20R, M36I, P39S, R41K, L63Q, I64V  
RCC_TDR_483644 RCC_TDR_483644 None    G16E, K20R, M36I, P39S, R41K, L63Q, I64V, H69Y, K70KR  
RCC_TDR_483685 RCC_TDR_483685 None    I13V, E35D, M36I, R41K, H69K, L89M  
RCC_TDR_483689 RCC_TDR_483689 None    L19I, M36I, R41K, I62V, L63A, I64V, E65D, H69Y, I72V  
RCC_TDR_483771 RCC_TDR_483771 None    I13V, K20R, M36I, R41K, I64V  
RCC_TDR_483861 RCC_TDR_483861 None    L10LI, I13V, E35D, M36I, R41K, K45R, H69K, L89M  
RCC_TDR_483963 RCC_TDR_483963 None    I13V, M36I, N37D, R41K, D60E, I64V, H69Y  
RCC_TDR_802510 RCC_TDR_802510 None    I13V, M36I, N37D, R41K, D60E, I64V  
RCC_TDR_805324 RCC_TDR_805324 None    I13V, M36I, R41K, I64V  
RCC_TDR_807857 RCC_TDR_807857 None    M36I, R41K, L63S, I64V  
RCC_TDR_817428 RCC_TDR_817428 None    I13V, E35D, M36I, R41K, H69K, L89M  
RCC_TDR_828529 RCC_TDR_828529 None    L10I, I13V, K14R, G16E, E35N, M36I, P39S, R41K, R57K, H69K, K70E, L89M  

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