Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Sanabani (2011)
Title Characterization of partial and near full-length genomes of HIV-1 strains sampled from recently infected individuals in Sao Paulo, Brazil.
Citation PLoS ONE
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 51
NumPts 51
Subtype B, C, F

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
BR1002 BR1002 None    D6N, K7E, E11D, I72V, T125A, F181L, T218I, L234I  
BR1013 BR1013 None    D6N, K7Q, S17N, V32I, I72V, L74I, S119P, T124N, T125A, S153A, V176L, T218I, K219N, I220L, N222K, N254S, S255G  
BR1020 BR1020 None    D6T, K7Q, E10D, E13D, S17N, R20K, L28I, L101I, T112A, I113V, S119T, T124N, T125A, I135V, K156N, V201I, D256E  
BR1043 BR1043 None    E11D, T112M, S119P, V201I, D256E, S283G, R284G  
BR1046 BR1046 None    D6E, S17N, I72V, T112I, T124N, T125V, G163Q, A205S  
BR1047 BR1047 None    D6S, K7E, I72V, T125A, I135V, V151I, F181L, V201I, A205S, T206S, I268L  
BR1049 BR1049 None    E11D, S17T, A23V, L28I, V37I, S39C, L101V, S119P, T125A, K156N, D232E, D286N  
BR1051 BR1051 None    I113V, T124N, T125A, V201I, T206S, I220F  
BR1054 BR1054 None    E11D, S24N, V31I, V151I, G163A, D256E  
BR1055 BR1055 None    E11D, K14R, A21T, I113V, T124S, T125A, E138D, S230N, L234V, S255N, V281M  
BR1057 BR1057 None    T125A, I135V, V201I, Q216H, K219Q, L234I, A265V, D279G  
BR1064 BR1064 None    S17N, S39N, I72V, L74I, T125A, I135V, V201I, I203M, T206S, I208L, T218I, D256E, S283G  
BR1067 BR1067 None    S17N, I72V, L101I, S119T, T124A, M154I, V165I, V201I, T218I, L234V, D256E, S283G  
BR1068 BR1068 None    D6N, K7E, L28I, P30A, K188R, T206S, L234I  
BR1070 BR1070 None    E11D, I72V, L101I, K103R, S119G, T122I, T124A, T125A, V151I, T206S, K215Q, T218I, L234V, D256E  
BR1074 BR1074 None    L45V, I72V, T112I, I113V  
BR1077 BR1077 None    D6T, K7E, E10D, L45V, S119P, T122I, T124A, T125A, T218I, D256E  
BR1078 BR1078 None    D6S, K7E, E10D, D41N, I72V, T125A, I135V, K156N, V201I, A205S, K211R, S230N  
BR1079 BR1079 None    S17N, L28I, I72V, T124A, M154I, T206S, Y227F, L234H, D256E, R284G  
BR1080 BR1080 None    E10D, M50I, T124N, T125A, T206S, I208L, R231K, D253E, N254D, S255R, S283G  
BR1081 BR1081 None    S17N, I113V, T124N, T125A, G163T, I204V, K219N, N222K, S230N  
BR1082 BR1082 None    D6E, V31I, L74I, T122I, T124A, A175V, V259I  
BR1084 BR1084 None    D6N, K7R, S17N, V32I, T125A, V151I, T218I, R231K, L234I  
BR1089 BR1089 None    D3N, D6T, E10D, S17N, L45I, C56R, K71Q, S119R, T125A, K156N, R284G  
BR1092 BR1092 None    E10D, S39C, S119P, T122I, T124N, T125A, E157G, V201I, I268L  
BR1093 BR1093 None    D6T, K7E, E11D, R20K, I72V, I113V, T125A, A196P, V201I, T218I, L234I  
BR1094 BR1094 None    E11D, A21T, T112I, S119T, V201I, D256E, D279A, S283G, R284G P29T 
BR1095 BR1095 None    D41N, I72V, G82R, T125V, K136Q, K215N  
BR1097 BR1097 None    D6E, E11D, S24N, V31I, L74I, T122I, T124A, G163E  
BR1101 BR1101 None    D6N, K7R, S17N, P30S, V31I, T125A, K136Q, V201I, T206S, T218S  
BR1104 BR1104 None    K14R, R20K, N27G, V32I, S39C, L101I, S119P, G163H, V201I, K240R  
BR1107 BR1107 None    D6T, E10D, V32I, L45V, M50I, I72V, P90Q, K111R, T124N, N222H, L234I  
BR1110 BR1110 None    D6T, K7E, E10D, L45V, S119P, T122I, T124A, T125A, T218I, D256E  
BR1112 BR1112 None    E11D, S24N, V31I, V32I, M50I, I72V, T124N, T125A, V126L, I135V, V151I, V201I, F223Y, R284G, D288N  
BR1114 BR1114 None    E11D, S24N, D25E, V31I, M50T, L101I, T112I, I113L, T124N, T125A, K136Q, V201I, K211R, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
BR1115 BR1115 None   T97A V31I, S119T, T124N, T125A, V126L, I141V, I203M, D256E  
BR1119 BR1119 None    D6N, S17N, V31I, V32I, T124N, A175T  
BR1121 BR1121 None    G4E, D6N, S17C, M22I, D25N, D41N, E48K, D64N, G70E, L101I, T124N, E152K, M154I, E157K, G163E, I182V, R187K, T218S, I220L, Q221R G47K, E85K, G106E, E198K 
BR2018 BR2018 None    E11D, S24N, L28I, S39C, I72V, S119P, I135V, Q137R, F181L, V201I, A205S, K211R, Q216H, D256E, S283G K103Q 
BR2019 BR2019 None    E11D, K14R, S119P, T122I, T125A, S195T, T206S, V281M  
BR2022 BR2022 None    E11D, K14R, S24N, D25E, V31I, M50I, L101I, T112V, S119G, T124N, K136Q, V201I, K211R, T218I, L234I, I251L, A265V, R269K, D278A  
BR2025 BR2025 None    S17N, V31I, I72V, P90S, T124N, V126L, M154I, V201I, T218S  
BR2027 BR2027 None    E11D, L28I, V37I, M50I, I60M, L101I, T112V, S119G, T122I, K156N, N254K  
BR2028 BR2028 None    K14R, A21S, V32I, I72V, S119P, T122I, T124A, V201I, T218S, D256E  
BR2029 BR2029 None    S17N, M22R, V54I, V77A, I84L, L101I, S119T, T124A, T125A, G134S, K136Q, I191M, V201L, A205S, K211R, L234V, D256E, S283G  
BR2032 BR2032 None    E11D, E13D, K14R, L28I, T124A, T206S, I208L, S230N, V249I, D256E, S283G  
BR2033 BR2033 None    K7Q, E11D, E13D, S24N, I72V, S119P, T122I, T124A, V201I, K211R  
BR2036 BR2036 None   E157Q D6E, E10D, V31I, I72V, S119P, T122I, T124A, K160Q, G163E, R269K, D278N, D279N, D286N, E287K  
BR2040 BR2040 None    V31I, I72V, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
BR2041 BR2041 None    E11D, S17T, V31I, D41A, I72V, L101I, V151I, T206S, K215Q, K219R, D256E  
BR2042 BR2042 None    K7R, E11D, A21T, T112I, S119P, V201I, D256E, S283G, R284G  

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