Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Aghokeng (2011)
Title Scale-up of antiretroviral treatment in sub-Saharan Africa is accompanied by increasing HIV-1 drug resistance mutations in drug-naive patients.
Citation AIDS
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 206
NumPts 206
Subtype CRF02_AG, G, J, D, CRF01_AE, F, A, CRF45_cpx, CRF13_cpx, CRF09_cpx

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 206 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
HJ126 HJ126 None    L5LF, I13V, K14KR, K20I, E35D, M36I, P39Q, R41K, H69K, V82VI, L89M  
HJ1446 HJ1446 None    I13A, K14R, K20I, E35D, M36I, R41K, H69K, K70KR, V82VI, L89M  
HJ1450 HJ1450 None    I13V, G16GE, K20I, E35K, M36I, N37ND, R41N, D60DE, Q61E, I64IM, H69K, L89M  
HJ1452 HJ1452 None    T12Q, I13V, K14R, G17GE, K20I, M36I, R41K, H69K, K70R, V82I, L89M  
HJ1457 HJ1457 None    L10V, I13V, K14R, G16E, M36I, R41K, H69K, L89M  
HJ1463 HJ1463 None    I13V, K20I, M36I, R41K, H69K, K70KR, L89M  
HJ1487 HJ1487 None    I13V, K14R, G16E, K20I, M36I, R41K, H69K, K70R, L89M T26TA 
HJ1490 HJ1490 None    I13V, K14R, I15V, K20I, M36I, N37DE, R41K, I64M, H69K, L89M  
HJ1599 HJ1599 None    I13V, L19P, K20I, M36I, R41K, I64M, H69K, L89M  
HJ1611 HJ1611 None    I15V, L19I, E35D, M36I, N37E, R41K, I62IV, H69X  
HJ1613 HJ1613 None    I13V, K14R, G16E, K20I, M36I, R41K, H69K, L89M  
HJ1627 HJ1627 None    L10V, T12K, I13A, K14R, K20I, E35D, M36I, N37E, R41K, L63LIM, H69K, L89M  
HJ1632 HJ1632 None    L10I, I13V, I15V, K20R, E35D, M36L, I62V, L63V, I64M, H69Q, L89M  
HJ1633 HJ1633 None    L10LV, I13V, K14R, G16E, K20I, M36I, R41K, I64L, H69K, L89M  
HJ1643 HJ1643 None    I13V, K14KR, L19P, K20I, M36I, R41K, H69K, L89M  
HJ1668 HJ1668 None    I13V, E35DN, M36I, N37D, R41K, R57RK, H69K, L89M  
HJ1672 HJ1672 None    I13AV, K14R, K20I, M36I, R41K, H69K, K70R, L89M  
HJ1674 HJ1674 None    I13V, K14R, G16DE, L19LI, K20I, M36I, R41K, H69K, K70R, L89M  
HJ1675 HJ1675 None    I13V, K14KR, G16GE, L19LP, K20I, M36I, R41K, H69K, K70KR, I72IV, L89M  
HJ1678 HJ1678 None    I13V, K20I, E35Q, M36I, R41K, K45R, R57K, C67E, H69K, V82I, L89M  
HJ1683 HJ1683 None    I13V, K14KR, I15IV, G16GE, K20I, E35X, M36I, R41K, L63LHP, H69K, K70KR, V77VI, L89M  
HJ1684 HJ1684 None    I13V, G16E, K20I, M36I, P39PL, R41K, K45KR, H69K, K70KR, L89M  
HJ1685 HJ1685 None    L10LV, I13AV, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69K, L89M  
HJ1687 HJ1687 None    I13A, K14R, K20I, M36I, N37ND, R41K, H69K, K70KR, L89M  
HJ1688 HJ1688 None    L10LV, I13V, K14R, G16GE, L19LP, K20I, E35D, M36I, N37X, L63LP, H69K, K70KQ, L89M  
HJ1690 HJ1690 None    I13V, L19P, K20I, M36I, R41K, K43I, L63LP, H69R, K70R, L89M  
HJ1694 HJ1694 None    L10LI, I13V, L19LP, K20I, E35D, M36I, R41K, K43KR, L63LP, I64IM, H69R, V77VI, L89M  
HJ1776 HJ1776 None    T12A, I13V, K14KR, G16E, K20I, E35D, M36I, R41K, H69K, L89M  
HJ1783 HJ1783 None    L10V, T12TA, I15IV, L19LI, K20R, E35D, M36I, R41K, R57RK, L63P, H69Q  
HJ1784 HJ1784 None    T12K, I13V, K14R, G16E, K20I, E35D, M36I, R41K, I64L, H69K, L89IM V75VG 
HJ1785 HJ1785 None    I13V, K14KR, L19V, E35D, M36I, R41K, H69K, L89M  
HJ1786 HJ1786 None    I13V, G16E, K20I, E35D, M36I, R41K, H69K, K70KR, I72T, L89M  
HJ1794 HJ1794 None  M46ML  L10I, I13IV, E35D, M36I, R41K, L63P, I64V, C67HY, H69Q  
HJ1804 HJ1804 None    L10V, I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89M  
HJ1807 HJ1807 None    I13V, K20I, E35D, M36I, P39Q, R41K, H69K, T74S, L89M  
HJ1809 HJ1809 None    L10LIV, T12K, I13V, K14R, G16E, L19LI, K20I, E21ED, E35D, M36I, R41K, H69K, L89M  
HJ1814 HJ1814 None    I13V, K14R, K20I, M36I, R41K, K43R, L63PS, H69K, K70KR, V82I, L89M  
HJ1815 HJ1815 None    L10LI, T12TP, K14KR, E35D, M36I, R41K, L63P, H69Q  
HJ1833 HJ1833 None    I13V, K20I, M36I, R41K, I64LM, H69K, L89M  
HJ1834 HJ1834 None    I13V, K14KR, K20I, M36I, R41K, I64IM, H69K, K70R, L89M  
HJ1863 HJ1863 None    T12A, I13V, K14R, G16E, K20I, E35DN, M36I, R41K, H69K, K70KR, L89M  
HJ1864 HJ1864 None    I13V, K14R, G16E, K20I, M36I, R41K, H69K, K70KR, I72IM, L89M  
HJ1865 HJ1865 None    L5LF, I13V, K14R, G16E, Q18QR, K20I, E35DN, M36I, R41K, L63V, I64M, H69K, L89M  
HJ1866 HJ1866 None    L10LI, I13V, K14KR, I15V, K20R, E35D, M36I, N37D, R41K, H69K, L89M  
HJ1867 HJ1867 None    L10I, E35D, M36I, R41K, R57K, L63T, C67DN, H69K, L89LM  
HJ1868 HJ1868 None    L10LV, I13V, K14R, L19LP, K20IV, M36I, N37D, R41K, H69K, L89M  
HJ1871 HJ1871 None    I13V, L19I, K20I, E35N, M36I, N37DE, R41K, H69K, L89M  
HJ1879 HJ1879 None    L5LF, I13V, K20I, M36I, N37NS, R41K, I64IM, C67Y, H69K, L89M  
HJ1881 HJ1881 None    I13V, K14R, K20I, M36I, R41K, I64L, H69K, I72V, L89M  
HJ1882 HJ1882 None    L10LI, I13V, K14R, G17E, K20I, E34K, M36I, Q61N, I62M, L63NS, C67E, H69K, I72T, V77I, L89M  
HJ1883 HJ1883 None    L10LV, I13V, K14KR, L19LP, K20R, M36I, N37ND, R41K, H69K, K70R, L89M  
HJ1884 HJ1884 None    I13V, K20I, E35D, M36I, P39PS, R41K, L63HP, H69K, K70KR, L89M  
HJ1885 HJ1885 None    I13V, K14R, G17E, K20M, E34K, M36I, N37D, Q61N, I62M, L63N, C67E, H69K, K70KR, I72T, V77I, L89M  
HJ1891 HJ1891 None    I13V, K14R, G16E, K20I, M36I, R41K, H69K, K70R, L89M  
HJ1892 HJ1892 None    I13V, K14KR, L19LI, K20I, E35D, M36I, R41K, R57RK, H69K, T74TS, L89M  
HJ1901 HJ1901 None    G16A, E35D, M36MI, N37D, D60E, Q61G, I62V, L63T, C67E, H69K, V77I, L89M, I93M  
HJ1903 HJ1903 None    I13V, I15L, K20I, V32VA, M36I, R41K, L63C, I64M, H69K, L89M  
HJ1908 HJ1908 None    I13V, K20I, E35N, M36I, N37D, R41K, H69K, L89M  
HJ1909 HJ1909 None    I13V, K14R, L19LP, K20I, M36I, R41K, L63X, H69K, I72V, L89M  
HJ1915 HJ1915 None    L10V, I13V, G16E, K20I, L33V, E34T, M36I, N37T, P39S, I62V, L63S, H69K, L89M  
HJ1927 HJ1927 None    I13AV, K14KR, K20I, M36I, R41K, L63P, H69T, K70R, L89I  
HJ1948 HJ1948 None    I13V, K14R, G16E, K20I, E35D, M36I, R41K, I64M, H69K, L89M  
HJ1949 HJ1949 None    I13V, K14KR, M36I, N37E, R41K, H69K, L89M  
HJ1950 HJ1950 None    I13V, E35D, M36I, R41K, I62V, L63P, H69K, I72E, L89M  
HJ1952 HJ1952 None    T12TA, I13V, K14R, I15V, K20I, E35D, M36I, R41K, H69K, V82I, L89M  
HJ1956 HJ1956 None    L10I, I13V, I15V, K20I, E35N, M36I, N37D, R41K, L63Q, H69Q, L89M  
HJ1958 HJ1958 None    I13V, K14R, K20R, M36I, R41K, H69K, L89M  
HJ1960 HJ1960 None    I13V, G17GE, K20I, M36I, R41K, H69K, K70R, L89M  
HJ1973 HJ1973 None    T12TK, I13V, K14R, K20I, M36I, N37S, R41K, L63P, H69K, K70R, L89M  
HJ1974 HJ1974 None    L10I, I15V, G16A, M36I, N37D, L63V, C67E, H69K, T74S, V77T, L89M  
HJ1979 HJ1979 None    T12A, I13V, K14KR, K20IV, M36I, R41K, L63P, H69K, L89M I84IM 
HJ2018 HJ2018 None    K14R, I15V, M36MI, R41K  
HJ2023 HJ2023 None    T12A, I13V, G16E, K20I, M36I, R41K, H69K, L89M  
HJ2025 HJ2025 None    I13V, K14R, I15V, K20I, E35D, M36I, N37D, R41K, I64M, H69K, K70KR, L89M  
HJ2030 HJ2030 None    L10LI, I13V, K14R, K20I, E35D, M36I, R41K, R57K, L63P, C67E, H69K, V82I, L89M  
HJ2067 HJ2067 None    L10I, I13V, L19P, K20I, M36I, R41K, L63X, H69K, K70R, L89M  
HJ2076 HJ2076 None    L10V, T12K, I15V, G16A, E35D, M36I, N37D, D60E, Q61E, L63M, C67E, H69K, L89M  
HJ2079 HJ2079 None    I13V, G16E, K20I, E35D, M36I, R41K, K43R, H69K, K70R, L89M  
HJ2080 HJ2080 None    I13V, K14KR, K20I, E35D, M36I, N37S, R41K, H69K, L89M  
HJ227 HJ227 None    T12A, E35N, M36I, N37D, R41K, H69K, L89M  
HJ604 HJ604 None    I13V, K14R, I15V, K20I, E35N, M36I, N37D, R41K, K43R, L63P, H69K, L89M  
SK2032-PI SK2032-PI None    L10I, G16A, E35D, M36I, N37D, K45R, D60E, Q61E, I62IV, L63T, C67E, H69K, K70KR, L89M, I93M  
SK3002-PI SK3002-PI None    I13V, G16E, K20I, M36I, R41RK, H69K, K70R, I72T, L89M  
SK3015-PI SK3015-PI None    I13V, K14R, K20I, E35DN, M36I, R41K, R57RK, D60E, H69K, K70KR, L89M  
SK3024-PI SK3024-PI None    I13V, K20I, M36I, R41K, H69K, L89M  
SK3032-PI SK3032-PI None    I15V, E35D, M36I, R41K, I62V, L63I, I64V  
SK3052-PI SK3052-PI None    L10I, T12TA, I13V, K14R, I15IV, G16A, M36I, N37D, R57K, D60E, Q61D, L63IT, C67E, H69K, L89M  
SK4053-PI SK4053-PI None    G16A, E35ED, N37E, R41RK, K43KR, D60E, Q61DEG, L63T, C67E, H69K, V77I  
SK4071-PI SK4071-PI None    L10LI, T12TA, K14KR, G16A, M36L, N37D, Q61EG, I62V, L63AV, I64IM, C67E, H69K, T74S, V77VI, L89M, I93IL  
SK5022-PI SK5022-PI None    I13A, K14R, K20I, M36I, R41K, L63AP, H69K, L89IM  
SK6009-PI SK6009-PI None    K14KR, G16A, K20R, M36I, N37D, D60E, Q61E, L63S, C67E, H69K, I72V, V77I, L89M  
SK6074-PI SK6074-PI None    L10LV, G16E, E35D, M36MI, R41K, D60DE, I62IV, H69K, V77I, L89M  
SK8011-PI SK8011-PI None    I13V, E35D, M36I, N37D, R41K, L63P, H69K, K70R, L89M  
SK8034-PI SK8034-PI None   K20KT L10IV, I13V, E35DN, M36L, N37D, R41K, R57K, L63P, H69K, L89M  
SK8040-PI SK8040-PI None    I13IV, I15V, E35D, M36L, R41K, I62IV, L63T, I64M, H69K, L89M  
SK9009-PI SK9009-PI None    L10I, G16A, N37E, P39Q, K43R, D60E, Q61E, L63T, C67E, H69K, I72T, V77I  
SK9010-PI SK9010-PI None    L10I, I13V, G16A, Q18H, K20R, E35G, M36I, N37D, R41RK, D60E, Q61E, I62V, L63I, C67E, H69K, L89M  
SK9035-PI SK9035-PI None    G16A, E35D, M36I, N37D, D60E, Q61N, L63T, E65D, C67E, H69K, I72IT, V77I, L89M  
SK9037-PI SK9037-PI None    L10LI, T12PS, I13V, L19V, E35D, M36I, R41K, R57K, D60E, L63P, H69K, I72IM, V77I, L89M  
SK9051-PI SK9051-PI None    L10I, I13V, G16A, M36I, N37V, R57K, Q61E, L63V, I64IM, C67E, H69K, L89M, I93IL  

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