Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Graf (2011)
Title HIV-1 genetic diversity and drug resistance among treatment naive patients from southern Brazil: An association of HIV-1 subtypes with exposure categories.
Citation J Clin Virol
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 81
NumPts 81
Subtype C, B, F

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
SC01 SC01 None    R20K, M50T, L101I, T112V, T124N, K136Q, V201I, L234I, I251L, R269K, D278A, V281M  
SC02 SC02 None    E11D, S24N, D25E, V31I, M50I, L101I, T112V, S119P, T122I, T125N, K136Q, V201I, L234I, I251L, R269K, D278A  
SC03 SC03 None    V31I, M50T, L101I, T112V, T124N, K136Q, K188R, G193E, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281L, D288N  
SC04 SC04 None    M50T, I72V, E96D, L101I, G106A, T112V, S119T, K136Q, V165I, H171L, V201I, T206S, L234I, I251L, R269K, D278A, V281M, S283G  
SC05 SC05 None    D25E, S39C, M50I, L101I, K103R, T112V, T124N, K136H, V201I, L234I, I251L, R269K, D278A  
SC06 SC06 None  E138A  D25E, V31I, M50T, L101I, T112V, T124N, K136Q, K188R, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M, S283N F100V, L102R, S147R 
SC07 SC07 None    E11D, E13D, R20K, D25E, V31I, V37I, M50T, L101I, T112V, T124N, K136Q, K188R, G193E, V201I, T218I, L234I, I251L, D256E, R269K, D278A, V281M  
SC09 SC09 None    E10A, D25E, V31I, M50I, I72V, L101I, T112V, S119T, T124N, G134D, K136Q, T218I, L234I, I251L, A265V, R269K, D278A  
SC100 SC100 None    D25E, V31I, M50T, E96D, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M, S283N  
SC101 SC101 None    V31I, T112V, T124N, T125A, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M, S283G, D288E  
SC103 SC103 None    A23V, I113V, S119P, T124N, T125A, G193E, V201I, S230N, L234I, D278A, V281M  
SC104 SC104 None    D25E, V31I, M50T, L101I, K111T, T112V, T124N, K136Q, T206S, T218I, L234I, I251L, N254K, A265V, R269K, D278A, V281M  
SC106 SC106 None    D6E, S17N, D25E, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M, R284G, D286N  
SC107 SC107 None    D25E, V31I, V32I, M50T, L101I, T112V, T124N, G134D, K136Q, D167E, V201I, L234I, R269K, D278A, V281M  
SC11 SC11 None    V31I, M50T, T112V, S119T, T124N, K136Q, V201I, L234I, I251L, A265V, R269K, D278A, V281M  
SC113 SC113 None    D6T, S17N, D25E, I72V, F100Y, L101I, S119T, T125A, I135V, V151I, V201I, T206S, A265V K7A 
SC114 SC114 None    K14R, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, R269K, D278A, V281M  
SC115 SC115 None    D25E, L28I, S39C, M50I, L101I, T112V, I113V, T124N, K173R, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M, R284G, D288N  
SC116 SC116 None    E11D, D25E, V31I, M50T, L74I, L101I, K111Q, T112V, T124N, K136Q, T218I, L234I, I251L, A265V, R269K, D278A  
SC12 SC12 None    M50T, L101I, T112V, T124N, K136Q, V201I, T206S, Q214E, T218I, L234I, I251L, R269K, D278A, V281M  
SC120 SC120 None    E11D, K14R, D25E, V31I, M50T, S57G, L101I, T112V, T124N, I135V, K136Q, V201I, T218I, L234I, I251L, R269K, D278A, V281M  
SC121 SC121 None    E11D, D25E, V31I, S39G, M50I, C56S, I60M, I84M, E96D, L101I, T112V, T124N, T125A, K136Q, H171L, V201I, L234I, I251L, A265V, R269K, D278A L102V 
SC126 SC126 None    V31I, M50I, L101I, T112V, S119P, T124N, G134D, K136Q, V201I, I208L, K211R, T218I, L234I, I251L, D256E, A265V, R269K, D278A  
SC127 SC127 None    D25E, V31I, M50T, L101I, T112V, S119P, T122I, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M, D288N  
SC128 SC128 None    M50L, I72V, L101I, V151I, A265V  
SC13 SC13 None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, K173R, V201I, I208M, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC130 SC130 None    D25E, V31I, M50T, L101I, K111R, T112V, T124N, K136Q, I208L, K211R, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC131 SC131 None    E11D, D25E, V31I, M50T, L101I, T112V, T122I, T124N, K136Q, V281M  
SC132 SC132 None    D25E, V31I, M50I, I72V, L101I, T112V, S119T, T124N, G134D, K136Q, T218I, L234I, I251L, A265V, R269K, D278A  
SC133 SC133 None    K14R, D25E, L28I, S39C, L101I, T112V, I135V, K136Q, V201I, L234I, I251L, D278S  
SC135 SC135 None    E11D, D25E, V31I, M50T, L101I, T112V, T124N, K136Q, G163A, G193E, V201I, A205S, T218I, L234I, I251L, A265V, R269K, D278A, V281M, D286N  
SC138 SC138 None    S24N, D25E, V31I, M50T, L101I, G106A, T112V, T124N, K136Q, V201I, K215N, T218I, L234I, I251L, A265V, R269K, D278A  
SC14 SC14 None    E11D, S24N, D25E, V31I, L45Q, L101I, T112V, I113V, T124N, K136Q, V201I, T206S, T218I, L234I, I251L, D256E, A265V, D278A  
SC140 SC140 None    E11D, S24N, D25E, V31I, M50T, L101I, G106A, T112V, T124N, K136Q, V201I, K215N, T218I, L234I, I251L, A265V, R269K, D278A  
SC141 SC141 None    D25E, V31I, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, S283G  
SC142 SC142 None    D25E, V31I, M50T, L101I, K111R, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC143 SC143 None    D25E, V31I, M50T, T112V, T124N, T125A, K136Q, G193E, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M, D286N  
SC15 SC15 None    V31I, M50T, L101I, T112V, T124N, K136Q, I182V, V201I, T218I, L234I, A265V, R269K, D278A, V281M, S283N  
SC19 SC19 None    E11D, S24N, D25E, V31I, M50T, L101I, T112V, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC22 SC22 None    D25E, V31I, M50I, L101I, T112V, T124N, G134D, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A  
SC24 SC24 None    E11D, S24N, D25E, V31I, M50T, L101I, T112V, S119P, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC29 SC29 None    D6N, V31I, I72V, S119P, V201I K7D 
SC30 SC30 None    E11D, D25E, L28I, V37I, S39C, M50I, L101I, T112V, T122I, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC32 SC32 None    E11D, S24G, D25E, V32I, M50T, L101I, T112V, S119T, T122I, T124N, K136Q, D167E, V201I, T206S, T218I, I220V, L234I, I251L, A265V, R269K, D278A, V281M  
SC33 SC33 None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC34 SC34 None    D6E, V31I, V37I, S39C, M50I, I72V, T125A, V126L, K211R, T218I, L234I, D253E  
SC35 SC35 None    D6T, E10D, M50I, I72V, L101I, S119T, T125A, I135V, V151I, T206S, A265V K7A 
SC37 SC37 None    E10D, V31I, L45Q, I72V, I84L, L101I, I113V, S119P, T124A, T125A, K136Q, V201I, A205S, K211R, T218I, L234V, A265V, R269K, D278A, V281M  
SC38 SC38 None    E11D, S24N, D25E, V31I, M50T, I60M, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC39 SC39 None    K14R, V31I, M50T, I72V, K111Q, T112V, T124N, K136Q, V201I, T206S, T218M, L234I, I251L, A265V, R269K, D278A, V281M  
SC40 SC40 None    D25E, V31I, M50T, L101I, T112V, S119P, T122I, T124N, K136Q, K173R, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC42 SC42 None    E11D, S24N, D25E, V31I, V32I, D41N, M50T, L101I, G106A, T112V, K136Q, V201I, K215N, T218I, L234I, I251L, A265V, R269K, D278A  
SC43 SC43 None    E11D, S24N, D25E, V31I, M50T, T112V, S119P, F121L, T122S, T124N, K136Q, V201I, T218I, K219N, N222K, L234I, I251L, A265V, R269K, D278A, V281M  
SC44 SC44 None    V37I, D41N, L45I, I84L, S119P, T122I, T124A, T125A, K136N, M154I, V165I, V201I, A205S, K211R, T218I, L234V, D256E, S283G, D288N  
SC46 SC46 None    D6N, K7E, E10A, K14R, I72V, F100Y, L101I, S119P, T125A, I135V, T206S, K240R, N254K, S255G E48D 
SC47 SC47 None    E11D, D25E, V31I, M50T, A91T, E96D, L101I, T112V, S119R, T124N, K136Q, V201I, L234I, I251L, A265V, R269K, D278A, V281M  
SC49 SC49 None    E11D, S24N, D25E, V31I, M50T, L101I, T112V, S119P, T122I, T124N, K136Q, V201I, K215N, L234I, I251L, R269K, D278A, V281M  
SC50 SC50 None    E11D, D25E, V31I, M50T, L101I, K111G, T112V, S119P, T124N, T125A, K136Q, T218I, L234I, I251L, D256E, A265V, R269K, D278A  
SC51 SC51 None    E10D, M50I, L101I, T112V, T124N, T125A, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC52 SC52 None    E11D, K14R, D25E, V31I, M50T, L101I, T112V, S119T, T124N, T125A, K136Q, V201I, T206S, T218I, L234I, I251L, A265V, R269K, D278A, V281M, D288E A133Q, E138V 
SC53 SC53 None    D25E, V32I, S39C, M50T, L101I, K103R, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, R269K, D278A, V281M, D288E  
SC54 SC54 None    D6E, K14R, D25E, V32I, I72V, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, R269K, D278A, S283G  
SC56 SC56 None    E11D, E13D, D25E, V31I, M50T, L101I, K111Q, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC63 SC63 None    E11D, D25E, V31I, V32I, L101I, T112V, T124N, K136Q, G193E, V201I, D278A, V281M  
SC65 SC65 None    K7R, E11D, S17T, K111R, S119P, T124S, T125A, K156N, T206S, E212Q K211A 
SC69 SC69 None    E11D, V31I, M50T, K111T, T112V, T124N, K136Q, V201I, T206S, L234I, I251L, A265V, R269K, D278A, V281M  
SC70 SC70 None    K14R, D25E, V31I, M50T, L101I, T112V, I113V, S119P, T124N, K136Q, V201I, T206S, L234I, I251L, D256E, A265V, R269K, D278A, V281M  
SC71 SC71 None    E11D, S17T, A23T, L28I, Q62R, I72V, I113V, T124A  
SC72 SC72 None    K7R, E11D, S24N, D25E, V31I, M50T, T112V, S119T, T124N, K136Q, K156N, V201I, L234I, I251L, R269K, D278A, V281M  
SC73 SC73 None    K14R, V31I, M50T, L101I, K111Q, T112V, T124N, K136H, D167E, V201I, T206S, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC77 SC77 None    K14R, D25E, L28I, V31I, V32I, M50I, I72V, L101I, T112V, T124N, I135V, K136Q, K173R, V201I, L234I, I251L, A265V, R269K, D278A, V281M  
SC78 SC78 None    K14R, D25E, V31I, M50T, I72V, T112V, S119P, T124N, T125A, K136Q, V201I, T206S, L234I, I251L, A265V, R269K, D278A, V281M  
SC82 SC82 None    E11D, S17T, M22I, I72V, T112A, S119P, T124A, T125A, A205T, K219Q, I220L  
SC83 SC83 None    E11D, S24N, D25E, V31I, V32I, L101I, T112V, S119P, T124N, T125A, K136Q, G163T, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
SC88 SC88 None    E11D, A21T, M50T, I113V, T122I, T125A, V151I  
SC89 SC89 None    V31I, M50I, A91E, L101I, T112V, S119R, T124N, K136Q, T218I, L234I, I251L, A265V, R269K, D278A, V281M, S283N  
SC91 SC91 None    E10D, K14R, S17N, S24D, D25E, S39C, L45Q, M50T, I72V, L101I, T112V, T124N, K136Q, V165I, V201I, T218I, L234I, I251L, R269K, D278A, V281M, S283N, D288N  
SC93 SC93 None    E11D, V31I, V32I, V37I, D41N, I72V, L101I, T112V, T122I, T124N, G134D, K136Q, V201I, T206S, L234I, I251L, R269K, D278A, V281M  
SC96 SC96 None    D25E, V31I, V32I, L45V, L101V, T112V, S119P, T124N, K136Q, V165I, V201I, I203M, T218I, L234I, I251L, A265V, R269K, D278A, D288N  
SC97 SC97 None    E11D, D25E, V31I, M50T, V88I, L101I, T112V, T124N, K136Q, V201I, L234I, I251L, A265V, R269K, D278A, V281M  
SC99 SC99 None    D25E, V32I, M50T, L101I, T112A, T124N, K136Q, I203M, T218I, L234I, R269K, D278A, V281M  

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