Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Struck (2007)
Title A new HIV-1 B/F1 unique recombinant form (URF) outbreak in Luxembourg: near full-length genome characterization and phylogenetic analysis.
Citation Direct Genbank Submission
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 20
NumPts 20
Subtype B

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
luBF_01.03 luBF_01.03 None None   V35T, T39S, I135T, D177E, T200I, F214L, V245Q, I293V, A355G, S379G, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, K527KN, A534S, A554T, V559I  
luBF_02.03 luBF_02.03 None None   V35T, I135T, D177E, T200I, F214L, V245Q, I293V, Q334L, A355G, I375IV, S379SG, K385KR, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, K527KN, A534S, A554T, V559I  
luBF_03.03 luBF_03.03 None None   V35KT, I135T, D177E, T200I, F214L, V245Q, I293V, A355G, I375IV, S379SG, V381VI, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, K527KN, A534S, A554T, V559I  
luBF_04.03 luBF_04.03 None None   V35K, I135T, D177E, T200V, F214L, V245Q, I293V, A355G, S379G, K385R, T386I, A400T, T403I, E432D, K451R, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I  
luBF_05.03 luBF_05.03 None None   V35K, I135T, D177E, V189VI, T200I, F214L, V245Q, I293V, A355G, S379G, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, K527KN, A534S, A554T, V559I  
luBF_06.03 luBF_06.03 None None   V35K, D123DE, I135T, D177E, T200I, F214L, V245Q, I293V, A355G, S379G, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I H96T 
luBF_07.03 luBF_07.03 None None   V35KT, K122KE, I135T, D177E, T200IV, F214FL, V245Q, I293V, A355G, A376AT, T377TIM, S379SG, V381VI, K385KR, T386I, A400AT, T403I, E432D, V466A, D471E, T477A, H483Q, G490GE, L517I, S519N, K527KN, A534S, A554T, V559I  
luBF_08.03 luBF_08.03 None None   V35K, I135T, D177E, T200I, F214L, V245Q, I293V, A355G, S379G, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, V531I, A534S, A554T, V559I  
luBF_09.03 luBF_09.03 None None   V35K, I135T, D177E, T200I, F214L, V245Q, K277R, I293V, E297K, A355G, S379G, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I  
luBF_10.03 luBF_10.03 None None   V35K, V118I, I135T, D177E, T200I, F214L, V245Q, K277KR, I293V, A355G, S379G, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I  
luBF_11.04 luBF_11.04 None None   V35K, I135T, D177E, T200I, F214L, V245Q, I293V, Q334L, A355G, S379G, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I  
luBF_12.04 luBF_12.04 None None   V35T, T39K, I135T, D177E, T200I, F214L, V245Q, I293V, D324E, A355G, S379G, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I  
luBF_13.05 luBF_13.05 None None   V35KT, I135T, T200I, I202V, F214L, V245Q, I293V, K311KR, V317VA, A355G, S379G, K385R, T386I, K390KR, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I  
luBF_14.05 luBF_14.05 None None   V35K, I135T, T200I, I202V, F214L, V245Q, V276VI, K277KR, I293V, A355G, S379G, K385R, T386I, A400T, T403I, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I L486LV 
luBF_16.05 luBF_16.05 None None   V35K, I135T, D177E, V189I, T200I, F214L, V245Q, I293V, A355G, S379G, K385R, T386I, A400T, T403I, E432D, R461K, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I  
luBF_17.05 luBF_17.05 None None   V35K, D123DE, I135T, D177DE, T200I, F214L, V245Q, I293V, A355G, S379G, K385R, T386I, A400T, T403I, E432D, L452F, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I  
luBF_18.06 luBF_18.06 None None   V35T, T39M, I135T, D177E, T200I, F214L, V245Q, E248N, I293V, A355G, I375V, A376AP, T377L, S379A, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L517I, S519N, A534S, A554T, V559I  
luBF_19.06 luBF_19.06 None None   V35T, T39M, I135T, D177E, T200I, F214L, V245Q, D250E, I293V, A355G, I375V, T377L, S379A, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, S515SP, L517I, S519N, A534S, A554S, V559I  
luBF_20.06 luBF_20.06 None None   V35K, I135T, S162C, D177E, T200I, F214L, V245Q, I293V, A355G, S379G, K385R, T386I, A400T, T403I, E432D, V466A, D471E, T477A, H483Q, L484I, L517I, S519N, K527N, A534S, A554T, V559I  
luBF_21.06 luBF_21.06 None None   V35T, T39K, I135T, D177E, T200I, F214L, V245Q, D250E, I293V, A355G, I375V, T377M, S379C, T386I, K390R, A400T, T403I, E432D, R461K, V466A, D471E, T477A, H483Q, L517I, S519N, K527N, A534S, A554T, V559I  

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