Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Tymchuck (2010)
Title Baseline HIV resistance in Malawi.
Citation Direct Genbank Submission
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 20
NumPts 20
Subtype C

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
MW01 MW01 None None  E138A K20R, V35T, E36T, T39E, S48T, K122E, D123S, K173I, Q174K, I178L, V179I, T200E, E204A, Q207E, F214L, V245Q, E248D, A272P, K275R, K277R, Q278N, E291D, V292I, I293V, V317A, Q334H, G335D  
MW02 MW02 None None  E138A K20R, V35T, E36T, T39E, S48T, K122E, D123S, K173I, Q174K, I178L, V179I, T200E, E204A, Q207E, F214L, V245Q, A272S, I293V, D324E, Q334H, G335D  
MW03 MW03 None None   E28K, V35T, T39E, S48T, E53D, W88C, K122E, K173A, D177E, I178L, T200A, E204K, Q207E, R211K, F214L, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294Q, I326V, Q334C, G335D  
MW04 MW04 None None   V35T, T39E, S48T, E53D, K122E, D123G, K166R, K173A, N175H, D177E, I178V, V179I, T200A, I202V, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, K311R, V317A, D324E, Q334N, G335D  
MW05 MW05 None None   V35T, E36A, T39E, S48T, K122E, D123G, K166R, K173T, Q174K, T200A, Q207E, R211K, V245M, E248D, A272P, K277R, L283I, E291D, V292I, I293V, Q334H, G335D  
MW08 MW08 None None   V8I, V35T, T39E, S48T, K122E, I135V, K173T, Q174R, D177E, I178L, G196T, T200A, E204K, Q207D, R211E, V245Q, A272P, L279M, E291D, I293V, E297T, V317A, Q334E, G335D A267P 
MW09 MW09 None None   V35T, T39K, S48T, K49R, K102R, K122E, S162C, K173A, D177E, T200A, Q207A, V245Q, D250E, A272P, K277R, T286A, E291D, V292I, I293V, L310I, Q334H, G335D  
MW10 MW10 None None   K20R, V35T, E36A, T39E, S48T, K122E, D123S, K166R, K173T, T200A, Q207E, R211K, V245Q, K277R, T286A, E291D, V292I, I293V, Q334N, G335D  
MW12 MW12 None None   V35K, E36A, T39E, S48T, K102Q, K122E, D123N, S162C, K173T, T200A, Q207E, R211K, V245Q, E248D, A272P, K277R, E291D, V292I, I293V, S322T, D324E, Q334N  
MW13 MW13 None None   V35T, T39E, S48T, K122E, D123S, A158S, K173A, D177E, G196K, T200A, R211K, V245M, E248N, A272P, L279M, T286A, V292I, I293V, S322T, G335A  
MW14 MW14 None None   V8I, V35T, E36A, T39E, S48T, K122E, K166R, K173A, Q174K, D177E, T200A, I202V, Q207E, R211K, V245Q, E248K, D250E, A272P, K277R, T286A, E291D, V292I, I293V, Q334H, G335D, E344D  
MW15 MW15 None None   V35T, E36A, T39E, S48T, D123E, K173T, Q174K, D177E, T200A, Q207E, R211K, V245Q, A272P, I274V, Q278H, T286A, E291D, V292I, I293V, P313T, Q334N, G335D  
MW16 MW16 None None   V35T, E36A, T39E, S48T, A98S, K122E, K173T, Q174K, T200A, Q207E, R211K, P243T, V245Q, A272S, K277R, T286A, E291D, V292I, I293V, S322A, I329L, Q334H, G335D  
MW17 MW17 None None   V35T, E36A, T39E, S48T, K122E, D123G, S162C, K173T, Q174K, I195L, T200A, Q207E, R211K, F214L, A272P, K275Q, K277R, Q278H, T286A, E291D, V292I, I293V, E297Q, Q334H, G335D  
MW18 MW18 None None   V35T, T39E, S48T, K122E, D123N, I142T, K173T, D177E, T200A, Q207A, R211K, V241I, V245Q, D250E, S251D, A272S, K277R, T286A, E291D, V292I, I293V, Q334H, G335D  
MW19 MW19 None None   V35T, E36A, T39E, S48T, K122E, D123G, K173A, Q174K, D177E, T200A, Q207E, V245K, A272P, Q278K, R284K, T286A, E291D, I293V, E308X, Q334N, G335D  
MW20 MW20 None None   V35T, T39K, S48T, K122E, D123S, I159V, D177E, I178M, G196Q, T200A, Q207E, R211K, V245Q, E248D, D250E, S251N, A272P, K277R, T286A, E291D, V292I, I293V, Q334N, G335D  
MW21 MW21 None None   V35T, T39E, S48T, A98S, K122E, I135V, S162A, K173V, Q174K, D177E, G196K, T200A, Q207E, R211E, V245M, A272P, L279M, T286A, E291D, V292I, I293V, V317A, S322T, G335D T351R 
MW22 MW22 None None   V35T, E36A, T39E, S48T, D121H, K122E, D123G, K173A, Q174K, D177E, T200A, Q207E, R211K, P243T, V245H, A272P, T286A, E291D, V292I, I293V, S322A, Q334H  
MW23 MW23 None None   V35T, T39E, S48T, K122E, K173A, Q174R, D177E, G196E, T200A, Q207E, R211K, V245Q, E248V, K277R, T286A, I293V, G333E, Q334H  

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