Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Kandathil (2009)
Title The frequency of HIV-I drug resistance mutations among treatment-naive individuals at a tertiary care centre in South India.
Citation Int J STD AIDS
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 93
NumPts 93
Subtype C, A

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
CD06_402 CD06_402 None None   V35T, T39N, S48T, V60I, D121Y, K122E, I135T, S162H, T165I, K173A, D177E, T200A, E204K, Q207E, F214L, V245Q, A272P, K277R, K281R, T286A, E291D, V292I, I293V, E297A  
CD06_406 CD06_406 None None   V35T, E36A, T39D, V60I, D121Y, K122E, I135T, S162Y, K173A, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I, I293V R206G 
CD06_411 CD06_411 None None   V35T, E36A, T39D, S48T, E53ED, V60I, D121Y, K122E, S162H, K173A, D177E, T200A, Q207E, R211K, V245HQ, A272P, K277R, K281R, E291D, V292I, I293V, P294T  
CD06_415 CD06_415 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, A158S, S162A, T165I, D177E, T200A, Q207E, V245Q, A272P, K277R, T286A, V292VIL, I293V K66KN, H96HQ 
CD06_419 CD06_419 None None   V35T, T39D, S48T, E53ED, V60I, D121Y, K122E, I135R, S162A, K173A, Q174K, D177E, T200A, Q207G, R211S, V245Q, A272P, V276I, K277R, E291D, V292I, I293V I257IM 
CD06_420 CD06_420 None None   V35T, T39D, D121H, K122E, S162A, K173A, Q174K, D177E, T200A, Q207E, V245Q, A272P, K277R, E291D, V292I, I293V  
CD06_444 CD06_444 None None F77FL  V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135V, S162A, K166R, K173T, P176S, D177G, T200A, Q207E, V245Q, K259R, A272P, K277R, T286A, E291D, V292I, I293V  
CD06_461 CD06_461 None None   V35M, E36A, T39E, S48T, V60I, D121Y, K122E, K173A, Q174K, D177E, T200A, Q207G, R211K, F214L, V245Q, A272P, K281R, E291D, V292I, I293V K287KN 
CD06_468 CD06_468 None None   V35T, E36A, T39DE, S48T, V60I, D121Y, K122E, I135T, S162A, K173A, D177E, T200A, Q207E, V245Q, A272P, K277R, E291D, V292I, I293V  
CD06_469 CD06_469 None None   E28D, V35T, T39K, S48T, V60I, D121Y, K122E, D123E, I135R, S162C, K166R, K173A, T200A, Q207E, R211K, V245Q, E248I, A272P, K277R, T286A, E291D, V292I, I293V, E298D  
CD06_481 CD06_481 None None   V35T, T39D, S48T, K49R, V60I, Q91QH, D121Y, K122E, I135R, T165I, Q174T, D177E, T200E, Q207E, R211K, V245Q, K249Q, A272P, K277R, K281R, E291D, V292I, I293V, P294T, T296P, E297P I257IM 
CD06_484 CD06_484 None None   V35K, E36A, T39D, S48T, V60I, D121Y, K122E, T139A, S162D, K166R, K173A, Q174R, N175H, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I, I293V, E297A  
CD06_503 CD06_503 None None   V8I, V35T, E36A, T39E, S48T, V60I, Q91QH, D121Y, K122E, I135K, K173A, Q174K, D177E, T200A, Q207E, V245Q, A272P, K277R, K281R, E291D, V292I, I293V  
CD06_509 CD06_509 None None   V35T, E36A, T39D, V60I, D121Y, K122E, I135R, S162A, K173A, D177E, V179I, T200A, E204K, Q207E, V245Q, A272P, K277R, K281R, T286A, E291D, V292I, I293V  
CD06_568 CD06_568 None None   K20R, V35T, T39DN, S48T, V60I, D121H, K122E, I135T, S162H, T165I, K173A, Q174K, D177E, T200A, Q207E, R211K, V245Q, A272P, V276I, K277R, T286A, E291D, V292I, I293V R83RS 
CD06_579 CD06_579 None None   V8I, P14A, V35T, E36A, T39D, S48T, V60I, K64KR, K122E, D123N, I135L, S162A, K173A, Q174K, D177E, Q197LP, T200A, Q207E, V245Q, A272P, K277X, K281R, E291D, V292I, I293V  
CD06_595 CD06_595 None None   V35T, E36A, T39D, S48T, V60I, K122A, I135V, S162A, K173A, D177E, I178L, T200A, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I, I293V H235HQ 
CD06_599 CD06_599 None None   E6D, V35T, E36D, T39N, S48T, V60I, D121C, K122E, S162Y, K173E, D177E, Q207E, V245E, A272P, K277R, E291D, V292I, I293V  
CD06_604 CD06_604 None None  E138A T27X, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, D123DE, I142V, S162H, T165I, K166R, K173X, D177E, G196E, Q197K, T200A, Q207E, V245Q, K249KN, A272P, K277R, T286A, E291D, V292I, I293V, E297A Y271Y*, L289LIV 
CD06_639 CD06_639 None None   V35T, T39D, S48T, V60I, K122E, I135L, S162A, K166R, K173A, D177E, T200A, Q207E, R211K, Q222QH, V245Q, A272P, K275Q, K277R, T286A, E291D, V292I, I293V, E297A Q258QH, L289LIV 
cd06_648 cd06_648 None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135T, S162A, K166R, K173T, D177E, T200A, Q207E, V245Q, A272P, K277R, K281KR, T286A, E291D, V292I, I293V, E297A  
CD06_658 CD06_658 None None   V35T, T39D, S48T, V60I, K64KN, D121Y, K122E, I135R, N136T, S162A, K173A, D177E, T200A, Q207E, V245Q, A272P, K277R, T286A, E291D, V292M, P294H, L295I, E297A  
cd07_005 cd07_005 None None   I2L, K20R, V35T, E36A, T39E, K43R, S48T, V60I, K122E, D123S, I135R, K173A, D177E, T200A, Q207G, R211K, V245Q, A272P, K275R, K277R, E291D, V292I, I293V P1F 
CD07_012 CD07_012 None None   V21I, V35M, E36A, T39D, S48T, V60I, K102R, D121Y, K122E, I135T, S162A, K166R, K173A, D177E, Q207E, Q242R, V245E, A272P, K277R, T286A, V292I, I293V  
CD07_030 CD07_030 None None   V35T, E36A, T39E, V60I, D121Y, K122E, I135L, A158AS, S162A, K173A, D177E, T200A, Q207E, R211K, V245Q, A272P, T286A, E291D, V292I  
CD07_047 CD07_047 None None   V35T, E36A, T39D, S48T, V60I, D121H, K122E, I135R, S162H, K166R, K173V, Q174K, Q197E, T200A, Q207E, R211K, V245Q, E248Q, A272P, K281R, T286A, E291D, V292I, I293V  
CD07_048 CD07_048 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, D123E, I135T, S162Y, T165I, K173T, Q174K, D177E, T200A, Q207A, R211K, V245Q, A272P, K277R, E291D, I293V R199RS 
CD07_058 CD07_058 None None   V35T, T39D, S48T, V60I, D121H, K122E, I135R, S162C, K173A, D177E, V179I, T200A, Q207G, R211K, V245Q, L246LMV, A272P, K277R, T286A, E291D, V292I, I293V N54NK, K66KN, L295Y 
CD07_331 CD07_331 None None   V35T, E36A, T39D, S48T, V60I, K122E, S162T, T165I, K173A, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, E297A  
CD07_373 CD07_373 None None   V35T, E36A, T39D, S48T, E53K, V60I, K103R, D121Y, K122E, I135T, I142V, S162Y, T165I, K173A, T200A, Q207E, V245Q, I257L, A272P, K277R, E291D, V292I, I293V  
CD07_377 CD07_377 None None  A98G V35T, T39D, S48T, V60I, K101R, D121Y, K122DE, D123DE, I135R, S162Y, K173A, D177E, T200A, E203ED, Q207E, L210LF, R211K, V245Q, D256DE, A272P, K281R, E291D, V292I, I293V R199RS 
VL05_043 VL05_043 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, K173A, Q174K, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, K281R, T286A, E291D, V292I, I293V K66KN 
VL05_054 VL05_054 None None   K22KN, V35T, T39D, S48T, V60I, D121Y, K122E, I135K, S162A, K173A, D177E, I178L, T200A, Q207G, V245Q, K249Q, A272P, K277R, T286A, E291D R211RGW 
VL05_055 VL05_055 None None   V35T, T39D, S48T, K49R, V60I, D121Y, K122E, S162HQ, K173A, Q174R, T200A, Q207E, R211K, V245Q, A272P, K277R, K281R, E291D, V292I, I293V  
VL05_060 VL05_060 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162A, E169R, K173E, D177E, G196R, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
VL05_061 VL05_061 None None   V35T, T39I, S48T, V60I, K103R, T139A, E169D, K173A, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, K281R, T286A, E291D, V292I, I293V, E297A  
VL05_063 VL05_063 None None   V35T, T39E, D86DE, K101KN, D121Y, K122E, S162A, K166R, K173E, D177E, T200A, R211K, V245Q, A272P, K277R, E291D, I293V, P294A K281S 
vl05_067 vl05_067 None None   V35T, E36A, T39D, N57Y, V60I, D121Y, K122E, D123E, K173L, D177E, I178L, T200A, Q207K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V Y56I, L289P 
vl05_110 vl05_110 None None   V35T, E36A, T39D, I47N, V60I, D121Y, K122E, I135R, S162A, K173A, D177E, T200A, Q207K, R211K, V245Q, A272P, K277R, K281R, E291D, V292I, I293V, E300D L295P 
VL05_114 VL05_114 None None   V35T, T39D, S48T, V60I, K101R, D121Y, K122E, T165I, K173A, Q174K, D177E, T200E, Q207E, R211K, V245Q, K249Q, A272P, Q278H, K281R, E291D, V292I, I293V, P294T L289P 
VL05_115 VL05_115 None None   V35T, T39N, V60I, D121Y, K122E, I135X, S162A, K173E, Q174R, Q207G, R211K, V245H, A272P, V292I, I293V L120LF 
VL05_116 VL05_116 None None   E28X, V35T, T39E, S48T, V60VIL, K102Q, D121Y, K122E, I135T, S162A, K173T, D177E, Q207E, V245EK, A272P, K277R, K281R, T286A, E291D, V292I, I293V, E297A  
VL05_119 VL05_119 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K173T, D177E, T200A, Q207E, V245Q, A272P, K281R, E291D, V292I, I293V Q197A 
VL05_133 VL05_133 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, D123E, S162A, K166X, K173A, D177E, T200A, Q207A, R211K, V245Q, N265NK, A272P, K277R, E291D, V292I, I293V G196GRW 
VL05_145 VL05_145 None None   V35T, T39D, S48T, V60I, D121Y, K122E, S162Y, K173A, D177G, T200A, Q207E, R211K, V245Q, A272P, K281R, R284K, K287R, E291D, V292I, I293V, P294S  
VL05_146 VL05_146 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, A158S, S162A, K173X, D177E, T200A, Q207E, V245Q, A272P, K277R, E291D, V292I, I293V K66KN 
VL05_147 VL05_147 None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, T131P, I135T, K173A, Q174K, D177E, I178ILV, T200A, Q207E, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
VL05_151 VL05_151 None None   E28G, V35T, E36A, T39N, S48T, V60I, D86E, D123E, S162A, K173T, D177E, T200A, Q207E, V245Q, A272P, K277R, E291D, V292I, I293V  
vl05_153 vl05_153 None None   V35T, T39D, S48T, V60I, K101KN, D121Y, K122E, I135R, S162A, K173A, D177E, Q197QH, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, E297A I274IM 
VL05_157 VL05_157 None None   E28R, E29R, V35T, E36A, T39N, S48T, V60I, K122E, S162A, K173A, D177E, T200A, Q207E, D237N, V245H, S251N, A272P, V276I, T286A, E291D, V292I, I293V T27D 
vl05_162 vl05_162 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T165I, K173T, D177E, I178V, T200A, Q207E, R211K, V245Q, A272P, K281R, T286A, E291D, V292I, I293V  
VL05_167 VL05_167 None None   V35T, T39N, S48T, V60I, E79ED, D121H, K122E, S162A, K173A, D177E, I178V, T200A, Q207G, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V L120LF, K126KN 
VL05_173 VL05_173 None None   V35T, E36A, T39D, S48T, I50X, V60I, L100LF, D121H, K122E, I135T, S162H, K173A, D177E, I178L, T200A, Q207E, V245Q, A272P, K277R, Q278QH, T286A, E291D, V292I, I293V  
VL05_217 VL05_217 None None  Y181C V35T, E36A, T39D, S48T, V60I, K104R, D121Y, K122E, S162A, K173T, D177E, T200A, Q207E, R211K, D237N, V245Q, D250E, A272P, E291D, V292I I293D 
VL05_220 VL05_220 None None   V35T, E36A, T39D, S48T, V60I, V90I, S162A, K173A, D177E, T200A, Q207E, R211K, F214FL, V245Q, A272P, K277R, E291D, V292I, I293V  
VL06_042 VL06_042 None None   V35T, E36A, T39E, S48T, D121Y, K122E, I135T, S162A, K173T, D177E, T200A, Q207E, V245E, A272P, K277R, E291D, V292I, I293V, E297A  
VL06_062 VL06_062 None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135R, S162A, K173T, Q174R, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, E291D, I293V  
VL06_063 VL06_063 None None   K32E, V35K, E36A, T39D, S48T, V60I, L109LMV, D121Y, K122E, I135R, S162A, K173T, Q174R, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, I293V  
VL06_075 VL06_075 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, K173A, T200A, R211K, V245Q, A272P, K277R, E291D, V292I, I293V  
VL06_090 VL06_090 None None   V35T, T39D, S48T, V60I, D121Y, K122E, I135T, S162H, K173A, D177E, T200A, Q207G, R211G, V245Q, A272P, K281R, T286X, E291D, V292VIL, I293V, P294X, E297K R83RS 
VL06_096 VL06_096 None None   V35T, E36A, T39D, S48T, D121H, K122E, I135T, S162X, K166R, K173T, Q174K, D177E, T200A, I202V, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V K126KN 
VL06_100 VL06_100 None None   V35T, T39D, S48T, E53D, V60I, D121Y, K122E, I135R, S162A, K173A, D177E, T200A, Q207E, V245Q, A272P, K281R, T286A, E291D, V292I, I293V  
vl06_121 vl06_121 None None   V35T, T39D, S48T, D121H, K122E, I135T, K173T, Q174K, D177E, I178L, T200A, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I, I293V  
VL06_130 VL06_130 None None   T27P, V35I, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162N, K173V, D177E, T200A, Q207E, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
VL06_135 VL06_135 None None   V35T, T39N, S48T, V60I, K101Q, K122E, I135R, S162H, P170S, K173T, Q174K, D177Q, E194G, G196E, T200A, Q207E, R211K, V245H, K263R, A272P, K281R, T286A, E291D, E297A  
VL06_139 VL06_139 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K173T, D177E, T200A, Q207E, V245Q, A272P, K277R, E291D, V292I, I293V, E298K, E300K  
VL06_153 VL06_153 None None   V35T, T39N, S48T, V60I, K101Q, K122E, I135R, S162A, P170S, K173T, Q174K, D177Q, E194G, G196E, T200A, Q207E, R211K, V245H, A272P, K281R, T286A, E291ED, E297A  
VL06_162 VL06_162 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T165I, K173T, D177E, I178V, T200A, Q207E, R211K, V245Q, A272P, K277R, K281R, T286A, E291D, V292I, I293V, E297A  
VL06_208 VL06_208 None None   V35T, T39D, S48T, V60I, D121H, K122E, I135T, S162A, K173A, T200A, Q207E, V245Q, D256DE, A272P, V276T, K277R, T286V, E291D, V292I, I293V  
vl06_209 vl06_209 None None   V35T, E36A, T39E, S48T, V60I, K102Q, K122E, D123N, K166R, K173A, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
VL06_250 VL06_250 None None   V35T, T39N, V60I, D121Y, K122E, I142V, K173A, D177E, I178M, Q197K, T200A, Q207E, R211K, V245E, A272P, K277R, E291D, V292I, I293V K126KN 
VL06_266 VL06_266 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, D123E, I135T, T139A, S162H, K166R, K173T, D177E, I178M, V179I, T200A, Q207E, R211X, V245Q, A272P, K277R, E291D, V292I, I293V  
VL07_060 VL07_060 None None   V35T, T39D, S48T, N57NK, V60I, K64KN, D121Y, K122E, I135R, S162A, K173T, D177E, T200A, Q207E, V245Q, A272P, K277R, K281R, T286X, E291D, V292I, I293V, P294T  
vl07_075 vl07_075 None None   V35T, T39N, S48T, V60I, V90VI, K122E, S162Y, Q174K, N175Y, T200A, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I  
VL07_091 VL07_091 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, K173A, D177E, Q197L, T200A, Q207E, V245Q, A272P, K281R, E291D, V292I, I293V  
VL07_105 VL07_105 None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, D123DE, S162A, K173A, D177E, T200A, Q207E, V245Q, E248D, A272P, T286A, E291D, V292I, I293V H198HQ 
VL07_115 VL07_115 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, T165I, K173A, D177E, T200A, Q207E, R211X, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
VL07_123 VL07_123 None None   V35T, T39Q, S48T, V60I, D121C, K122E, I135R, I142T, K173A, D177E, I202V, Q207E, V245R, A272P, V276I, K277R, L283I, T286A, E291D, V292I, I293V  
VL07_125 VL07_125 None None M41L  V35T, T39E, V60I, K104R, K122E, S162A, K166R, K173A, D177E, T200A, Q207K, V245Q, D250E, A272P, K277R, K281R, E291D, V292I, I293V, E297A  
VL07_226 VL07_226 None None   V35T, E36D, T39E, D113DE, K122E, D123N, I135T, K173L, Q174K, D177E, Q197H, T200A, Q207A, R211S, V245X, E248D, A272P, L283I, T286A, E291D, V292I, I293V, P294T R72RS 
VL07_237 VL07_237 None None   V35T, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K173A, D177E, V179I, Q197H, T200A, I202V, Q207E, R211K, V245Q, A272P, E291D, V292I, I293V, E297A  
VL07_238 VL07_238 None None   V8I, V35K, T39D, S48T, V60I, E79ED, D121X, K122E, I135T, K173A, Q174K, D177E, T200A, R211K, V245Q, A272P, K275R, V276I, K277R, L283I, T286A, E291D, V292I, I293V  
VL07_263 VL07_263 None None   V35T, E36A, T39D, S48T, V60I, K122E, D123N, I135T, S162H, T165I, K166R, K173A, D177E, L187LF, T200A, I202V, Q207E, F214L, V245Q, E248D, A272P, K281R, E291D, V292I, I293V, P294T E89ED 
VL07_265 VL07_265 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K173A, D177E, T200V, Q207E, V245Q, E248ED, A272P, K277R, K281R, R284K, T286A, E291D, V292I, I293V  
VL07_269 VL07_269 None None   V35T, T39D, S48T, V60I, K173A, D177E, T200A, Q207K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
VL07_272 VL07_272 None None   V35T, T39N, E40ED, S48T, V60I, D121Y, K122E, I135T, S162A, K173A, T200A, Q207E, V245K, A272P, K277R, E291D, V292I, I293V  
VL07_274 VL07_274 None None  V179E V35T, T39E, K43E, V60I, V111I, D121H, K122E, I135M, K166R, K173A, I178L, T200A, E204K, Q207E, R211K, V245Q, A272P, K277R, T286A, V292I, I293V  
VL07_280 VL07_280 None None   V35T, T39D, S48T, V60I, D121Y, K122E, I135R, S162C, K173A, D177E, T200A, Q207N, R211K, V245Q, A272P, E291D, V292I, I293V  
VL07_284 VL07_284 None None   V35T, T39N, S48T, V60I, D121Y, K122E, I135T, S162A, T165I, K173A, Q174R, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, K281R, T286A, E291D, V292I, I293V  
VL07_332 VL07_332 None None   V35T, E36A, T39E, S48T, V60I, D86E, I135V, K173A, D177E, Q197H, T200A, Q207E, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
VL07_347 VL07_347 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135R, Y144F, S162A, K166R, K173A, D177E, T200A, Q207G, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, P294Q  
VL07_368 VL07_368 None None   V35T, T39D, S48T, V60I, D121H, K122E, I135R, K173A, Q174K, D177E, T200A, Q207N, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V Q258QH 
VL07_381 VL07_381 None None   V35T, T39D, S48T, V60I, D121H, K122E, K166R, K173A, D177E, V179I, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, V292L, I293V A267G 

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