Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Bonhoeffer (2004)
Title Evidence for positive epistasis in HIV-1.
Citation Science
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 9467
NumPts 9467
Subtype B, CRF02_AG, C, A, CRF01_AE, G, D, CRF18_cpx, CRF12_BF, CRF20_BG, CRF06_cpx, J, H


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Page 1   listing Isolate 1 to Isolate 100 from Total 9467 Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
03-124636 03-124636 Unknown Unknown  K103N K122KE, I135T, S162C, E169D, G196E, T215X, V245EK, R284K, T286A, A288S, I293V D250PS 
03-124638 03-124638 Unknown Unknown   V35I, K82KR, R83K, V118I, D121A, K122E, I178L, G196E, F214L, I244IV, D250NS, A272P, K277R, T286A, I293V, E297R  
03-124640 03-124640 Unknown Unknown D67N, K70R, M184V, K219Q  K20R, E28EA, K43Q, K82R, A98S, D123E, I142V, T200K, R211Q, F214L, L228H, A272P, K281R, T286A, I293V, E297K  
03-124641 03-124641 Unknown Unknown M41L, D67N, L74LI, M184V, L210W K103KN, G190A K20R, K43E, E44A, V118I, K173R, Q174E, Q207E, R211K, T215X, A272P, E297R  
03-124642 03-124642 Unknown Unknown D67N, T69D, K70R, M184V, T215I, K219Q V106A, G190A V35M, R83RK, V90I, K103R, K122E, I135T, F214L, K277R, I293V, P294A, E297EK  
03-124650 03-124650 Unknown Unknown M41L, D67N, M184V, L210W  I5V, E6K, K20R, V35VM, T39A, K43E, T69TA, V118I, K122E, D123DE, D177E, G196E, E203D, H208F, R211K, T215X, A272P, I293V  
03-124653 03-124653 Unknown Unknown M41ML, K65KR, L74LV, M184V V106I, Y181C T39TI, D123E, T139R, S163SN, D177E, V245E, A272P, I293V  
03-124654 03-124654 Unknown Unknown M184V Y181I, H221Y K122P, D123E, T139K, I142T, D177E, I178M, V179I, R211RK, F214L, E248D, A272P, K277R, K281KR, L283I, I293V, E297A  
03-124659 03-124659 Unknown Unknown   K11Q, A98AS, I135T, T200I, Q207E, F214FL, V245EK, R284K, T286A, I293IV  
03-124670 03-124670 Unknown Unknown D67DN, K70KR, K219KQ G190A, H221HY E28EK, K103KR, D123E, I135T, T139TK, K166R, V179I, T200TI, F214FL, D218DE, E233EK, A272P, K277KT, V292VI, E297K  
03-124673 03-124673 Unknown Unknown  K101KE K122KE, I135T, K166KR, I195IL, Q207X, R211AS, F214FL, K277R, I293V  
03-124679 03-124679 Unknown Unknown K65R, T69~, K219R K103N, Y181C, H221Y L34I, V35L, S68G, K102KR, K122E, K173KE, I178IM, V179VI, T200A, R211KQ, F214L, V245VM, D250E, I257IL, I293V, E297Q  
03-124681 03-124681 Unknown Unknown M184I L100I, K103N I135T, K173E, F214L, E248D, A272P, E297EQ  
03-124688 03-124688 Unknown Unknown   D123E, K166R, K277R, I293V  
03-124699 03-124699 Unknown Unknown M41L, T69D, L210W, K219R A98G T27TS, V35VI, T39A, K43S, E44ED, V60VI, V118I, K122E, I135T, S162A, Q174K, G196E, Q197K, T200E, E203K, H208Y, R211RK, T215X, K223E, L228H, Q242H, A272P, T286A, A288T, I293V, E297R  
03-124705 03-124705 Unknown Unknown L74V, M184V K103N, V108I, F227FL E6D, V35T, S68G, I135T, I202V, Q207H, R211K, P225PS, V245E, R284RK, T286A, I293IV  
03-124754 03-124754 Unknown Unknown M41L, L74V, M184V K103N, Y181C K122E, I135T, D177E, I178M, Q197K, R211K, T215X, A272P, K277R, T286A, E297K  
03-124757 03-124757 Unknown Unknown M41L, L74V, M184MV, L210W Y188L T39TA, V118I, A158S, R172K, K173R, Q174K, V179I, T200R, Q207E, R211K, T215X, K249KN, A272P, I293V, E297K  
03-124758 03-124758 Unknown Unknown M184MV  V35VIM, K49KR, R83RK, V90VI, K122P, D123DN, I135X, E169R, K173E, R211K, T286A, V292I, E297K  
03-124775 03-124775 Unknown Unknown M41L, D67DN, M184V, L210W  E6D, K43X, E44D, V118I, I142V, G196E, E203D, Q207E, R211RK, T215X, L228H, I293V, E297A  
03-124783 03-124783 Unknown Unknown M184V K103N V35X, I135ILM, T165I, R211RK, T215X, V245QR, E248ED, A272P, A288T  
03-124784 03-124784 Unknown Unknown   I178IM, R211T, I293IV  
03-124788 03-124788 Unknown Unknown M41ML, D67DN, L210LW  K20R, V35IM, K49R, V60VI, D121DY, K122E, D123DN, I135T, T165IL, E169D, I195IK, F214FL, T215X, I293V  
03-124789 03-124789 Unknown Unknown M41L, L210W K103N, V108I P19PS, T39A, K43Q, E44D, K49KR, K102G, K122E, D123N, I142V, S162N, D177E, T200A, T215X, K223T, A272P, K277R, R284K, I293V  
03-124796 03-124796 Unknown Unknown M41L, D67N, M184V, L210W, K219R K103KN, Y181C, H221Y P4S, K20R, V35I, T39TKN, E40Q, K43E, E44A, V111I, S117A, K122E, D123DN, S162SN, S163T, M164MI, K166KN, R172RK, V179VI, G196E, Q197K, H208Y, R211K, T215X, L228H, V245E, A272P, K277R, A288AS, P294Q  
03-124804 03-124804 Unknown Unknown   R83RK, A98S, D123E, I178L, G196E, T286A, E297EK  
03-124814 03-124814 Unknown Unknown M41L, D67DEG, L210W, T215F K101E, G190A V60I, S68G, A98S, V118I, K173N, Q174QK, V179I, T200A, Q207E, R211K, A272P, T286A  
03-124816 03-124816 Unknown Unknown   K64KR, K122KE, I135T, T165I, R211RK, F214FL, A272P, V276VI, K277R, L283I, I293IV, E297A  
03-124817 03-124817 Unknown Unknown K70R, M184V  K64KR, K122E, D123X, I135T, G196E, R211RK, F214FL, E248ED, A272P, K275R, I293V  
03-124820 03-124820 Unknown Unknown T215TS A98AG V35VI, S48T, K122KE, D123E, S162C, I178L, V179VI, E204ED, R211K, V245VE, E248EK, A272P, K277R, I293IV  
03-124822 03-124822 Unknown Unknown A62AV, K65R, V75I, F77L, Y115YF, F116Y, Q151M, M184V  K64KR, S68KR, V118VI, D123E, Q174H, D177E, I178IM, G196E, F214L, V245MT, E248D, A272P, K277R, I293V, E297K  
03-124825 03-124825 Unknown Unknown   V60I, D86E, W88WC, I135IT, I142IV, S162A, E203ED, Q207X, R211K, A272P, T286A, V292I, E297N I293IMV 
03-124830 03-124830 Unknown Unknown D67DN, T215F K103N, G190A V35IT, V90VI, K102N, D123DE, D177E, I178M, T200A, Q207E, R211K, V245K, E248ED, A272P, K277R, T286A, I293V  
03-124832 03-124832 Unknown Unknown M184V  K20R, V35IM, V118I, D123E, I135R, T165I, F214L, A272P, K277R, Q278H, K281R, I293V  
03-124834 03-124834 Unknown Unknown  K103KN E6ED, K11KR, K49R, I135IT, T200TIR, Q207N, R211K, V245M, T286TA, A288AS, I293V L80LF 
03-124835 03-124835 Unknown Unknown M41L, T215F K101P, K103N T39TA, A98S, V118VI, K122KE, I202IV, Q207QE, R211X, L228LR, A272P, K277R  
03-124838 03-124838 Unknown Unknown M184MV K103N K101X, T200A, R211RK, A272P, K277R, I293IV, E297K  
03-124840 03-124840 Unknown Unknown M41L, D67N, K70R, V75M, T215F, K219E G190GA T39TA, V60I, K82KR, K101R, K122E, I135T, K166KR, K173E, V179VI, H208HY, R211RK, D218DE, V245E, S251T, K277R, T286A, A288S  
03-124843 03-124843 Unknown Unknown T69D, K219KE K103KN, G190GA V35IT, T39A, V60I, K64KR, E79D, R83K, A98AS, K101KQR, K102KQR, K122KE, I135V, E169EK, K173E, I178IM, T200A, Q207QK, H208HY, L210LF, R211KT, T215X, L228HQR, V245VE, E248EV, T286A, A288S, E297K  
03-124845 03-124845 Unknown Unknown M41L, D67N, L210W, K219N K101P, V106I V35I, T39A, K43X, E44D, V118I, D121DH, K122KE, D123DE, K166R, V179I, G196E, T200A, E203D, H208F, R211K, T215X, D218E, D250E, A272P, K277KR, A288S, I293V, E297K  
03-124847 03-124847 Unknown Unknown   K43KR, K49R, I50V, V60I, R83K, D121DH, K122KE, I135T, N175H, D177E, I178IM, V189VI, Q278QH  
03-124851 03-124851 Unknown Unknown  K103N A98S, K122E, I142T, N175H, T200A, A272P  
03-124856 03-124856 Unknown Unknown T215TI  K49R, E53D, D123E, I135T, T139TA, E169D, V179X, T200TI, I202V, A272P, V292VI, I293V, E297R I180IMV 
03-124857 03-124857 Unknown Unknown M41L, M184V, L210W  T39TA, K43KR, V118VI, K122E, I135V, I142V, G196E, T200TI, E204EQ, R211RT, T215X, T286A, I293V, E297R  
03-124858 03-124858 Unknown Unknown  K103N, V108I V35I, K64R, V90I, K122E, I178M, L210LM, R211K, P243T, I244V, E248D, A272P, L283I, I293V, E297K  
03-124859 03-124859 Unknown Unknown M184MV E138EG, V179E V35M, T39A, R83K, K122KE, D123E, R211RK, A272P, K281R, T286A, A288S, E297K  
03-124860 03-124860 Unknown Unknown   E6D, K20R, D123E, S162C, T200I, K277R K122EG 
03-124861 03-124861 Unknown Unknown D67N, K70R, K219Q  D123E, A158S, D177E, R211K, V245E, T286A, K287KR, I293V  
03-124862 03-124862 Unknown Unknown D67N, K70R, L74LV, K219Q K103N, Y181I V35T, A98S, V118VI, K122E, I135IT, S162SG, S163ST, T165TI, Q207E, R211RK, F214L, L228H, A272S, K277R, I293V  
03-124863 03-124863 Unknown Unknown M41L, T215D  T39A, S162C, E169D, R211K, T286A, I293V  
03-124865 03-124865 Unknown Unknown A62V, D67DG, V75I, F77FL, Y115YF, F116Y, Q151M, M184V, K219E K101HQ, Y181C, G190A K20R, V35VI, S68G, K122E, D123N, I178L, T200A, F214FL, V245E, A272AP, K277R, T286A, E297K  
03-124866 03-124866 Unknown Unknown M41L, M184V, L210W  E40F, K43E, K49R, V60VI, K104R, K122E, D123E, V179VI, H208HY, R211RK, T215X, A272S, I293V, E297K  
03-124871 03-124871 Unknown Unknown   K122KE, I202V, Q207AE, R211RK, A272P, L283I  
03-124873 03-124873 Unknown Unknown T215TI F227FL P4PS, K20R, V35I, T39A, T69X, R83K, D123E, S162CY, Q174QR, D177E, D192DN, F214L, V245M, E248D, A272P, T290TP, E297R  
03-124875 03-124875 Unknown Unknown M41ML, D67N, T69D, K70R, T215F, K219Q K103N V35I, T39TA, E53D, V60VI, V118I, K122E, I135T, D177DG, G196E, R211RK, F214L, A272P, K277R, K281R, L283I, I293V, E297R  
03-124876 03-124876 Unknown Unknown   V60I, R83K, I135IV, E169ED, K173KR, R211RK, A272P, K277R, I293V, E297K  
03-124881 03-124881 Unknown Unknown D67DN, K70KR, M184V, K219KQ K103N, P225H K20KR, V60I, I135T, I142T, E169EK, K173KE, R211S, V245IT, D250DN, A272P, I293V  
03-124882 03-124882 Unknown Unknown   V8VI, G196E, R211G, V245X, E248D, A272P, T286P, I293V  
03-124883 03-124883 Unknown Unknown  K103KN, H221HY P4S, T27TI, V35VI, K122KE, I202IV, R211K, A272P, L283I, I293IL, T296S Q174HY 
03-124887 03-124887 Unknown Unknown   K122P, I135T, S162A, D177E, T200I, P243H, V245E, D250E, K277R, P294Q  
03-124898 03-124898 Unknown Unknown  K103N K20R, Q197K, T200A, A272P, V276I, K277R, Q278H, T286A, T290TA, E297HR  
03-124905 03-124905 Unknown Unknown M41L, D67DN, L210LW V106A, F227L P4PT, V35IT, T39A, D123E, I135V, V179I, R211K, T215X, V245T, D250DN, T286A, E297K  
03-124906 03-124906 Unknown Unknown  Y181YC R83K, T200TI, E203EK, R211K, V245Q  
03-124918 03-124918 Unknown Unknown A62AV, K65R G190S S162C, K166KR, I178L, E204D, R211K  
03-124922 03-124922 Unknown Unknown M184V E138A K122E, D123DN, I135V, I142IT, K173Q, D177E, I178M, T200TA, R211K, F214FL, P243T, E248ED, I293V  
03-124923 03-124923 Unknown Unknown M41ML, T215C  V35VL, V60I, S68SG, D121HY, K122E, D177E, Q207E, A272P, T286TA, I293V  
03-124934 03-124934 Unknown Unknown   V35VIL, K122E, I135T, K173E, T200TI, I202IV, I293V  
03-124936 03-124936 Unknown Unknown D67N, T69D, K70R, M184V, K219Q  V35VIM, V60I, A98AS, K102R, K126KR, I135L, S162A, K166R, T200A, E203K, Q207E, R211K, V245M, S251T, A272P, K277R, T286A  
03-124940 03-124940 Unknown Unknown M41L, D67N, T69DE, K70R, L74I, M184V, L210LW, T215F, K219Q K101E, Y181C, G190A E36EQ, T39A, K122E, S162C, G196R, T200A, D218E, L228H, K277R, T286A, A288T, E297Q  
03-124944 03-124944 Unknown Unknown M41L, F116FY, M184V, L210W K101KE V35IT, K43KE, E44ED, I94L, K122E, I135L, S162AG, E203X, R211RK, T215X, V245VE, A272P, K277R, T286A, V292I, I293IV, E297R  
03-124945 03-124945 Unknown Unknown F116FY, M184V Y181YC S68SG, T69TN, K122E, D123DE, Q151QR, Y188X, V292VI, I293V, E297A  
03-124946 03-124946 Unknown Unknown M41L, L210W  K30KR, V35VE, K43KE, K122E, I135ILM, I142V, T200A, T215X, V245E, A272P, V292VI  
03-124956 03-124956 Unknown Unknown M184V A98G K122KE, I135L, T200IM, Q207NS, R211K, F214L, V245M, A272P, I293V  
03-124960 03-124960 Unknown Unknown  L100LI, K103N, K238KT V35I, I135IT, Q207QE, F214L, L228LR, A272P, K277KR, T286TA, E297K  
03-124961 03-124961 Unknown Unknown  K103N R83K, T165I, Q207E, A272S, T286A, I293V  
03-124970 03-124970 Unknown Unknown   E6EK, K20R, V60VI, D86DE, K122P, D123DE, I142ILM, I178M, R211RK, A272P, P294AS  
03-124971 03-124971 Unknown Unknown M41L, M184V  S48T, R211K, T215X, I293V L295LP 
03-124978 03-124978 Unknown Unknown L74V L100I, K103NS K20KR, A98S, K102R, K122E, V179VI, R211K, T215X, I293IV, E297IV  
03-124984 03-124984 Unknown Unknown   I5V, V35T, T39AE, S68G, K122E, D123DN, I135V, S162A, E169EA, K173A, Q174K, D177E, I178M, T200A, Q207E, R211RK, V245Q, K277KR, T286TA, E291ED, V292I, I293V  
03-124985 03-124985 Unknown Unknown   K20KR, V35I, R83K, K122KE, T165I, I178IV, G196E, R211K, D250E, I293V, P294E, E297R  
03-124986 03-124986 Unknown Unknown L74V, M184V, L210W K103N, V108I, K238KN E6N, I31L, K122E, D123E, S162T, K166R, T200A, Q207E, T215X, A272P, I293V, E297R, L301I  
03-124990 03-124990 Unknown Unknown   V35T, T39A, K49KR, I50IV, V60VI, K82R, R83K, D123E, A272P, K281KR, E297K  
03-124994 03-124994 Unknown Unknown A62AV, M184V K103N, V108VI, Y181C K20R, V35T, K122E, I135T, Q197LP, T200X, I202IV, T215X, L228R, A272P, E297K  
03-124995 03-124995 Unknown Unknown M184V K103N, V179L, K238T V35T, E36D, T39TA, S68G, V90I, K122E, D123N, I135V, T139R, I142V, S162A, K173L, D177E, T200R, Q207T, R211K, T215X, V245VM, D250E, S251H, K275KQ, T286A, E291D, V292I, I293V, P294T  
03-124996 03-124996 Unknown Unknown D67G, T69D, K70R, M184MV, T215TI, K219Q A98AG, K103N, E138A S68G, K122E, I135L, T165TI, R211K, P225X, S251SI, A272P, I293IV  
03-124997 03-124997 Unknown Unknown   K20R, K122E, A158S, F214L, V245E, R284K, T286A  
03-124998 03-124998 Unknown Unknown M41ML, K70KR, L74LV, M184MV, L210LW  K11KR, S68SG, S162X, K166KR, G196GE, Q207E, R211RK, T215X, K277R, L283LI, G285GE  
03-125000 03-125000 Unknown Unknown   T39TA, E53D, K122KE, G196E, V245L, A272P, T286A, E297K  
03-125002 03-125002 Unknown Unknown K65KR, L74LV V108VI, Y181C, H221HY K49R, S68SG, T69TA, K122E, I135T, R211RK, V245VE, K281R, E291D  
03-125006 03-125006 Unknown Unknown M41L, D67N, T69D, M184V, L210W  V35M, T39A, K43E, E44D, V118I, K122E, D177DE, I178IM, G196E, T200TA, E203ED, Q207E, R211K, T215X, V245VE, A272P, T286TA  
03-125026 03-125026 Unknown Unknown L74LI, M184V K103N K20KR, V35M, K43Q, K49R, I50IV, T69N, R83K, W88S, K122KE, G196E, T200A, F214FL, V245VLM, D250DE, A288AS, I293IV, E297R  
03-125028 03-125028 Unknown Unknown T215F L100LI, K103HN, Y181YC, G190GA S68SG, K101R, K122E, I135IT, T139TR, S162SC, Q207E, R211K, L228LH, A272P, K277R, I293V  
03-125030 03-125030 Unknown Unknown M184V  I135T, I142V, S162CY, F214FL, V245K, A272P, V276VI, K277KR  
03-125033 03-125033 Unknown Unknown K70R K103KN P19PS, K32R, V35I, E40D, R83K, D123E, P176PS, I178L, E203EK, R211K, A272P, K277R, K281R, T286A, E297K  
03-125044 03-125044 Unknown Unknown M184V  K20R, V35I, E36D, I135T, D177E, Q197P, T200A, F214L, V245E, A272P, K277R, T286P, I293V, E297K K122S 
03-125046 03-125046 Unknown Unknown M41L, L74LV, M184MV, L210W, K219KN K103S, Y181YC, G190GA, H221HY K20KR, K43KQ, V60I, R83RK, K102Q, K122P, I135IT, S162C, G196GE, Q207E, R211RK, T215X, L228H, Q242QH, V245VE, A272P, K277R, T286TA, E297A  
03-125052 03-125052 Unknown Unknown M184MIV K103N, V108VI, P225PH K20R, V35K, I50IV, V90I, A98S, I135IM, T139A, I142IT, I178M, T200A, V245M, A272P, L283LI, E291D, P294PQ  
03-125056 03-125056 Unknown Unknown M41ML, D67DN, M184MI, L210LW, K219KR A98AG, V108VI, Y181YC, H221HY, F227FL V35I, T39TA, K43KE, E44ED, K101X, V118VI, D123E, Q174X, D177E, G196E, T200IV, I202V, E203EK, Q207E, H208HY, R211K, T215X, K223KE, V245VDE, A272P, K277KR, I293IV, E297EA  
03-125070 03-125070 Unknown Unknown D67N, K70R, K219Q K103N E6ED, T7TP, K11KR, V35R, V60I, K122E, I135T, S162Y, K173KQ, Q207DE, R211RK, F214L, L228LH, D250E, I293V, E297V  
03-125072 03-125072 Unknown Unknown M41L, L74LV, M184V K103N, V108I, Y181C, H221Y V35VM, K43E, R83K, I135V, R211K, T215X, A272P