Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Hai-Long (2007)
Title Genetic characterization of CRF01_AE full-length human immunodeficiency virus type 1 sequences from Fujian, China.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 10
NumPts 10
Subtype CRF01_AE

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
Fj052 Fj052 None None   E6D, K32R, V35T, T39K, K43D, F77S, V90I, K122E, D123S, K173I, Q174K, D177E, V189A, Q207A, R211S, K238R, I244V, V245E, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V, Q334E, M357K, R358G, G359S, K366R, A371V, K390R, K395R, A400I, T403M, V435E, N447H, V466A, D471E, Q480H, L491S, K512R, L517I, S519N, Q524E, A534S, A554S  
Fj055 Fj055 None None   E6D, K11A, V35T, T39K, K43E, K122E, D123N, I135T, K173I, Q174K, D177E, Q207K, R211S, K238R, V245E, I274V, T286V, E291D, I293V, E312T, I326V, I329V, G335D, M357K, G359S, V365A, K366R, T369A, A371V, K390R, K395R, A400T, T419A, L425*, E432D, L469P, D471E, Q480R, L491S, K512R, L517V, S519N, Q524E, A534S, A554S V60A 
Fj056 Fj056 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, K173I, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R, V245E, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D, M357K, G359S, H361R, K366R, T369A, A371V, K390R, K395R, E396G, A400T, T403V, E432D, N447S, D471E, Q480H, H483Q, L491S, Q507*, D511G, K512R, L517V, S519N, Q524E, A534S, A554S A98T, V108A 
Fj057 Fj057 None None   E6D, K11A, V35T, T39K, K122E, D123N, I135T, I142V, K166R, K173I, Q174K, D177E, I202V, Q207K, R211S, K238R, V245E, V276I, T286A, E291D, I293V, E312N, I326V, A327V, I329V, G335D, Y342F, M357K, G359S, K366R, T369A, A371V, V381I, K390R, K395R, A400T, E432D, L452V, D471E, H483Q, L491S, K512R, L517V, Q524E, A534S, I542V, A554S  
Fj061 Fj061 None None M184I M230I P4S, K11T, V35T, E36D, T39K, K43E, G45R, W88*, K102Q, K122E, D123N, I135T, W153*, K173V, Q174K, D177E, I202V, Q207K, R211S, W212*, K238R, V245E, T286A, E291D, I293V, E312T, I326V, I329V, G335D, R356K, M357K, G359S, K366R, T369A, A371V, W383*, K390R, K395R, W398*, A400T, W414*, E432D, A437V, N447S, R448K, G453R, D471E, L491S, Q509H, K512R, L517V, S519N, Q524E, A534S, W535*, A554S G444R 
Fj062 Fj062 None None  V179D, Y188L I2V, E6D, V35T, T39K, K43E, K49R, V60I, K122E, F171Y, K173I, Q174K, D177E, I178M, T200A, Q207A, R211S, K238R, V245E, T286A, A288T, E291D, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, S379G, T386I, K390R, A400T, T403M, E432D, V435I, A446C, N447S, D471E, Q480H, L491S, Q507H, K512R, L517V, S519N, Q524E, A534S, A554S N54D 
Fj063 Fj063 None None   E6D, V35T, T39K, K43E, K122E, D123S, I135L, R172K, K173I, Q174K, D177E, G196E, T200A, Q207A, L210F, R211S, V245E, K263R, A272T, E291D, V292I, I293V, E312T, I329V, G335D, M357K, G359S, K366R, A371V, S379G, K390R, K395R, A400T, E432D, N447S, D460N, D471E, Q480H, H483Y, L491S, K512R, L517I, S519N, Q524E, A534S, V548I, A554S H96R 
Fj064 Fj064 None None  V179D, Y188L I2V, E6D, V35T, T39K, K43E, K49R, V60I, K122E, F171Y, K173I, Q174K, D177E, I178M, T200A, Q207A, R211S, K238R, V245E, T286A, A288T, E291D, I293V, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, S379G, T386I, K390R, A400T, T403M, E432D, V435I, A446C, N447S, D471E, Q480H, L491S, Q507H, K512R, L517V, S519N, Q524E, A534S, A554S N54D 
Fj065 Fj065 None None   E6D, K11T, K20R, V35T, T39K, V75L, V111I, K122E, D123N, K166R, K173I, Q174K, D177E, I178M, V179I, T200A, Q207A, R211S, K238R, V245E, V276I, T286A, E291D, V292I, I293V, E297A, A304E, E312T, I329V, G335D, E344A, P345Q, M357K, R358S, G359S, K366R, A371V, A376V, K390R, K395R, T397V, A400T, E432D, I434L, N447S, D471E, Q480H, H483Y, L484S, L491S, K512R, L517I, S519N, Q524E, K527R, E529D, A534S, V536A, A554T Y232C 
Fj066 Fj066 None None   E6D, K11T, V35T, T39E, W88*, K122E, D123S, K173I, Q174K, D177E, I178M, V179I, Q207A, R211I, V245E, K275Q, E291D, V292I, I293V, K311R, E312T, I326V, I329V, G335D, M357K, G359S, K366R, A371V, K390R, A400T, T403M, N447S, D471E, Q480H, L491P, K512R, L517I, S519N, Q524G, A534S, A554S E344T