Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Sanabani (2006)
Title Analysis of the near full length genomes of HIV-1 subtypes B, F and BF recombinant from a cohort of 14 patients in Sao Paulo, Brazil.
Citation Infect Genet Evol
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 14
NumPts 14
Subtype F, B, CRF71_BF

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
01BR042 01BR042 RTI RTI   P14L, D123E, S162C, F171Y, K173A, Q174K, D177E, I178L, G196E, Q207E, R211K, F214L, V245Q, E248D, A272P, V276I, E291D, V292I, I293V, E297A, K311R, R356K, M357K, G359S, T377L, E399N, A400T, K431T, A446S, N447S, L452K, V466A, D471E, T477A, H483Q, L491S, K512Q, S519N, K527N, A534S, V559I  
01BR047 01BR047 RTI RTI D67N, K70R, M184V, T215F, K219Q N348I V35T, T39L, K122E, I135L, S162C, E169D, K173A, Q174K, Q207E, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294S, E297A, S322T, G333E, R356K, G359S, T377L, T386I, K390R, Q394L, A400T, K431T, V435A, A446S, L452K, D471E, T477A, H483Q, L484I, L491S, S519N, K527Q, A534S, V559I  
01BR087 01BR087 RTI RTI M41L, D67N, K70R, T215Y  E6D, K20R, V35M, T39A, D123E, S162C, E169D, K173A, Q174K, I178L, Q207E, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, E297A, V317A, R356K, G359S, A371T, T377L, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, R461K, V466A, T470I, D471E, T477A, H483Q, L491S, S519N, Q524E, E529D, A534S, V559I  
01BR125 01BR125 RTI RTI   E6N, K20R, V35T, K49R, K122E, I135V, S162C, E169D, K173A, Q174K, D177G, T200A, Q207E, K223R, V245Q, E248N, A272P, K275R, Q278N, T286A, E291D, V292I, I293V, E297A, R356K, G359S, T377Q, K390R, E399D, A400T, K431T, V435A, A446S, T450S, L452K, R461K, V466A, D471E, T477A, H483Q, L491S, S519N, A534S, V559I  
01BR226 01BR226 RTI RTI   V35T, K104R, I135T, S162C, K173A, Q174N, Q207E, R211K, F214L, V245Q, E248D, K277R, T286A, E291D, V292I, I293V, T296S, E297A, F346Y, R356K, G359S, T377V, E399D, A400T, K431T, V435A, A446S, L452M, V466A, D471E, T477A, H483Q, L484I, L491S, S519N, A534S, I556V  
01BR323 01BR323 RTI RTI M41L, D67N, L210W, T215Y E138A K20R, V35T, T39K, K43E, E44A, V118I, K122E, S162C, E169D, K173T, Q174K, N175Y, Q197E, Q207E, R211K, V245Q, E248D, A272P, Q278H, T286A, E291D, V292I, I293V, E297A, I329L, R356K, G359S, E370D, A376S, T377L, T386I, K390R, A400T, T403R, K431T, V435A, A446S, L452K, V466A, D471E, T477A, H483Q, L491T, A502V, S519N, K527N, A534S, A554T  
02BR002 02BR002 RTI RTI M41L, M184V, T215Y  K104N, I142V, S163T, R211K, I293V, E297A, A371V, A376S, T386I, K390R, K395R, E399D, A400T, T403M, S468P, T470A, A554T  
02BR005 02BR005 RTI RTI  K103N I135T, A158T, T200I, Q207N, L210F, R211K, L283I, I293V, S322T, I329L, T386I, K390R, E399D, T403V, E449D, T470P, A508S, S519N, V531I, V548I, A554S  
02BR006 02BR006 RTI RTI   K122E, D123E, D177E, V245I, E248D, I293V, T386I, A400T, V435I, S468P, L491S, Q509K, Q547H, V548I, A554S  
02BR008 02BR008 RTI RTI   D121H, K122E, I135T, I178V, R211K, E248D, K277R, L283I, I293V, P294T, E297K, I375V, T386I, V435M, S468P, T470Q, T477S, K527N, V548I, A554S  
02BR011 02BR011 RTI RTI D67N, K70R, M184V, K219Q  K49R, V60I, D123E, I135T, D177E, T200A, F214L, V245T, A272P, I293V, T386I, A400T, T403I, V466A, L491S, S519N, K558R  
02BR013 02BR013 RTI RTI D67G, T69D, K70R, K219Q A98G K64R, K122E, D123K, I135T, V179I, T200I, I202V, F214L, V245M, A272P, I293V, E297K, I329L, R356K, R358K, A376T, T386I, A400T, T403I, V467I, S468P, H483Y, K527N, A554T  
02BR033 02BR033 RTI RTI K70R, T215F, K219Q  V35T, T39A, E40D, K49R, V60I, K101Q, I135V, S162C, E169D, K173A, Q174K, Q207E, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, E297T, R356K, G359S, A360T, A376S, T377L, K390R, Q394L, K395R, E399D, A400T, K431T, V435A, A446S, K451R, L452K, V466A, S468P, D471E, T477A, H483W, L517I, A554T  
02BR034 02BR034 RTI RTI  Y181C, H221Y E6R, V35T, T39L, V90I, V118I, K122E, S162C, E169D, K173T, Q174K, T200A, Q207E, R211K, F214L, L228H, V245Q, E248D, A272P, T286A, V292I, I293V, E297A, R356K, G359S, T377L, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, D471E, T477A, H483Q, L491S, E492K, A502V, E514D, S519N, K527E, A534S