Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Arroyo (2004)
Title HIV type 1 subtypes among blood donors in the Mbeya region of southwest Tanzania.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 20
NumPts 20
Subtype C, A, D

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
01TZA125 01TZA125 None None   V35T, E36A, T39E, S48T, V60I, K122E, D123S, A158S, K173T, Q174K, T200A, Q207E, R211K, V245Q, S251H, A272P, I274V, K277R, Q278N, T286A, E291D, V292I, I293V, Q334H, G335D, R356K, G359T, T377M, K390R, E396D, A400T, V435A, L452I, V466I, D471E, H483Q, L491S, S519N, K527N, K530R, A534S, A554K  
01TZA173 01TZA173 None None   K32R, V35T, T39M, V60I, K122E, D123S, I135T, I142V, K173S, Q174K, D177E, V179I, Q207N, R211K, E248D, D250E, T286A, E291D, V292I, I293V, P294T, L295M, A327V, G335D, M357K, G359S, T369A, A371V, I375V, A376V, A400T, T403M, E404D, E432D, V435I, K454R, D471E, Q480H, H483Q, L491P, K512R, E514D, L517I, S519N, Q524K, K527E, E529D, A534S, A554S  
01TZA195 01TZA195 None None   V35T, T39I, V60I, K122E, D123N, I135T, K173L, Q174K, D177E, V179I, Q207A, R211S, V245I, D250E, K275S, T286A, E291D, I293V, P294T, E312D, D324E, G335D, M357K, G359S, A360T, A371V, I375V, A376V, A400T, E404D, E432D, V435A, V466I, D471E, Q480H, L491S, K512R, S519N, Q524K, K527G, E529D, A534S, A554S  
01TZA207 01TZA207 None None   V35T, E36A, T39E, E40D, S48T, K122E, D123S, I135T, K173A, Q174K, D177E, T200A, Q207E, V245Q, K281R, T286A, E291D, V292I, I293V, E297K, V317A, Q334H, G335D, R356K, G359T, A371V, T377M, T386I, K390R, A400T, E404D, V435P, E449D, L452I, V458I, V466I, S468P, D471E, H483Q, L491S, K530R, A534S, A554S  
01TZA246 01TZA246 None None   V35T, E36A, T39E, S48T, K122E, D123G, K173A, D177E, T200A, Q207E, R211K, V245S, D250E, K277R, T286A, E291D, V292I, I293V, G333R, Q334H, G335D, R356K, G359S, T377M, S379G, K390R, A400T, E404D, A446S, L452I, D471E, H483Q, L491S, S519N, K527Q, K530R, A534S, A554S  
01TZA247 01TZA247 None None   V8I, V35T, E36A, T39E, E40D, S48T, K122E, D123N, I142V, K173T, D177Q, I178L, T200A, Q207E, V245M, A272P, K277R, T286A, E291D, V292I, I293V, Q334N, G335D, R356K, G359T, A360V, T377M, K390R, E396D, A400T, E404D, L452I, T470N, D471E, T477A, H483Q, G490K, L491S, S519N, K527N, K530R, A534S, A554S  
01TZA260 01TZA260 None None   V35T, E36A, T39E, S48T, K122E, D123S, K166R, K173A, D177E, T200A, Q207E, V245Q, A272S, K277R, T286A, E291D, V292I, I293V, P313T, V317A, I326V, G335D, R356K, G359S, T377L, T386I, K390R, A400I, E404D, V435A, A437V, L452I, V466I, D471E, H483Q, L491S, S519N, K527N, K530R, A534S, A554N  
01TZA280 01TZA280 None None   E6A, V35T, K49R, V60I, I135T, D177E, Q207D, R211K, V245K, D250E, A272S, T286A, E297K, K311R, P313T, V317A, G333E, R356K, A360T, T377L, S379G, T386I, K390R, A400T, V435I, K451R, R461K, H483N, V496I, A554S  
01TZA301 01TZA301 None None   V8I, V35M, E36V, T39E, S48T, K103R, K122E, D123G, K166R, K173T, Q174R, T200A, Q207E, R211K, F214L, V245K, D250E, A272P, T286A, E291D, V292I, I293V, I326V, Q334H, G335D, R356K, G359T, A371T, A376C, T377M, K390R, A400T, E404D, V435I, R461K, V466I, D471E, T477A, H483Q, L491S, I495V, S519N, K530R, V531I, A534S, A554S  
01TZA306 01TZA306 None None   E6K, V35T, E36A, T39D, S48T, V60I, K122E, D123N, I135T, K173S, Q174E, D177E, V179I, Q207A, R211K, V245Q, A272P, K277R, E291D, V292I, I293V, Q334H, G335D, R356K, G359S, I375V, T377M, S379C, K390R, A400T, E404D, E432D, L452R, V466I, V467I, T470A, D471E, H483Q, L491S, S519N, K527R, A534S, A554S  
01TZA341 01TZA341 None None   V21I, V35T, V60I, K122E, I135T, K173S, Q174K, D177E, Q207A, R211S, D250E, T286A, V292I, I293V, P294T, E312D, I326V, G335D, M357K, G359S, A371V, I375V, A376V, T377M, T386I, A400T, T403M, E404D, E432D, V435A, D471E, Q480H, H483C, L491S, S515L, L517I, S519N, Q524K, K527G, E529D, A534S, A554S  
01TZA355 01TZA355 None None   V35T, E36A, T39E, S48T, K122E, D123S, I142V, K173V, D177G, T200A, Q207D, R211K, V245Q, K277R, T286A, E291D, V292I, I293V, Q334H, G335D, F346Y, R356K, G359A, T377L, S379A, K390R, A400T, T403M, E404D, E432D, V435P, D471E, Q480H, L491S, L517I, S519N, K527N, E529G, A534S, A554S  
01TZA359 01TZA359 None None   E6T, T27S, V35T, E40D, K49R, E53K, V60I, K122E, D123G, I135T, E169D, K173A, Q174K, D177E, T200A, Q207E, F214L, D250E, G262E, T286A, E291D, I293V, E302K, E312D, G335D, M357K, G359S, K366R, T369A, A371V, I375V, A376V, T377M, A400T, T403M, E404D, E432D, G453E, V466I, D471E, Q480H, S519N, K527N, E529K, A534S, A554S  
01TZA387 01TZA387 None None   I5V, V35S, V60I, K122E, D123S, Q145C, D177E, I178M, Q207A, R211K, V245K, D250E, A272P, K277R, L282C, L283I, I293V, G335D, P345Q, F346Y, R356K, M357L, T377Q, S379C, K390R, A400T, L469I, H483N, L491S, Q509H, S519N, A534S, A554N, V559I  
01TZA388 01TZA388 None None   V35T, E36A, T39E, S48T, K122E, D123G, K173A, Q174K, D177E, T200A, Q207E, V245Q, E248D, D250E, A272S, T286A, E291D, V292I, V317A, Q334H, G335D, R356K, G359T, T377M, K390R, A400T, E404D, E432D, V435A, L469I, D471E, H483Q, L491S, S519N, K530R, A534S, A554N  
01TZA93 01TZA93 None None  E138A E6G, V35T, E36A, T39E, V60I, K122E, D123S, F171Y, K173T, Q174K, D177E, T200A, I202V, R211K, F214L, V245M, E248S, D250E, A272S, T286A, E291D, V292I, I293V, H315Y, I329L, Q334H, G335D, R356K, G359T, A371V, A376S, T377M, T386I, K390R, E396D, A400T, E404D, L452M, K454R, R461K, V466I, D471E, T477A, H483Q, L491S, K527Q, K530R, V531I, A534S, A554S S48I 
01TZBD16_10 01TZB16_10 None None   V35T, E36A, T39E, S48T, K122E, D123N, I135T, Q145I, K173A, D177E, I178M, T200A, Q207E, R211K, P243T, V245H, A272P, K281R, T286A, E291D, V292I, I293V, Q334H, G335D, R356K, G359T, V365I, T377Q, S379C, K390R, A400I, E404D, E432D, I434L, V435A, A437V, L452I, V466I, S468T, D471E, T477A, H483Q, L491S, S519N, K530R, A534S, A554S  
01TZBD22_11 01TZB22_11 None None   V35T, E36A, T39E, S48T, K122E, D123G, Q197H, T200A, Q207E, P243A, V245Q, K277R, T286A, E291D, V292I, I293V, E297Q, Q334Y, G335D, R356K, G359T, T377Q, K390R, A400T, E404D, V435A, R461K, D471E, T477A, H483Q, L491S, S519N, K527N, K530R, V531I, A534S, A554N  
01TZBD39_8 01TZB39_8 None None   V35T, E36A, T39E, S48T, K122E, D123S, K173A, Q174K, T200S, Q207D, R211K, A272P, K277R, T286A, E291D, V292I, I293V, Q334D, G335D, R356K, G359T, T377M, K390R, E396D, A400T, E404D, V435A, K454R, V466I, D471E, H483Q, L491V, S519N, K530R, A534S, V548I, A554S  
01TZBD9_11 01TZB9_11 None None   V35T, E36A, T39E, S48T, V60I, K104R, K122E, D123S, I135T, K173A, D177E, T200A, Q207E, R211K, I244V, V245E, D250E, A272P, T286A, E291D, V292I, I293V, Q334H, G335D, R356K, G359S, T377V, K390R, A400T, E404D, V435I, L452I, V466I, V467I, S468T, D471E, H483Q, L491S, S519N, K527N, V531I, A534S, A554S, K558R