Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Swanson (2003)
Title Molecular characterization of 39 HIV-1 isolates representing group M (subtypes A-G) and group O: Sequence analysis of gag p24, pol integrase, and env gp41.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 37
NumPts 37
Subtype CRF01_AE, B, C, D, A, F, CRF02_AG, B + F, G, CRF06_cpx

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
BK132 BK132 None    I72V, T125TM, M154I  
BR57 BR57 None    S17N, L45V, I72V, L101I, T112I, S119A, T122I, T124N, K136Q, V201I, A205S, T218I, L234V, D256E, S283G  
BZ126 BZ126 None   G163R S17N, I72V, I84L, A91T, L101I, S119T, T124A, T125A, K136Q, V201I, A205S, T206S, T218I, Q221R, L234V, D256E, S283G  
BZ162 BZ162 None    E10D, I72V, L101I, K111KR, S119T, T124A, T125A, K136Q, V201I, A205S, T218I, L234V, D256E, S283G  
BZ163 BZ163 None   G163K S17N, I72V, I84L, A91T, L101I, S119T, T124A, T125A, K136Q, V201I, A205S, T206S, T218I, Q221R, L234V, D256E, S283G G106E 
BZ167 BZ167 None    L101I, T125A, I135V, D167DE, G193R, V201I, I208L, K211T, A265AV, R269RK, S283G  
CM235 CM235 None    K14R, A21T, A23V, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
CM237 CM237 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
CM238 CM238 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
CM240 CM240 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
CM243 CM243 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
DJ258 DJ258 None    K14R, V31I, S39C, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, N254Q, R269K, S283G  
DJ263 DJ263 None    K14R, V31I, V32I, S39C, S57G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, S153A, V201I, T206S, L234I, N254K, R269K, S283G F1FL 
ETH2220 ETH2220 None    S24N, D25E, L28I, S39C, M50I, I84IM, K111R, T112V, T124N, T125A, K136Q, D167E, K188R, V201I, T206S, K215N, T218L, L234I, D278A, S283G  
HH8793 HH8793 None    E11D, P30H, D41N, L101I, T112V, T124A, T125A, G134D, K136T, V201I, T206S, Y227F, L234V, S255N, D256E, S283G  
ID12 ID12 None    K14R, A21T, V31I, V32I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
ID17 ID17 None    E11D, K14R, A21T, M22L, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, N254S, S283G  
IVCO3671 IVCO3671 None    K14R, S24N, V31I, I72V, A98G, L101I, T112V, T124A, T125A, K127R, G134N, K136T, D167E, V201I, T206S, L234I, D256E, S283G  
NP1465 NP1465 None    K14R, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
POC30506 POC30506 None    A21T, S39N, L45Q, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
SE364 SE364 None    D25E, V31I, M50I, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, A265V, R269RK, D278A, S283G  
SE365 SE365 None    S17N, V32I, I72V, T112V, I113V, T124A, V201I, K211R, T218I, L234I, D256E  
SM145 SM145 None    D25E, K34R, F100Y, L101I, T112V, T124N, T125A, K136H, K188R, V201I, T218I, L234I, D278A, S283G  
TH1600 TH1600 None    S17C, S119R, T124N, T125S, G163E, K211R, I220V, K236KR, A265V  
UG268 UG268 None    K14R, S17N, D25E, V31I, M50I, I84M, V88I, L101I, T112V, T125A, K136Q, D167E, K173R, K188KR, V201I, T218L, L234I, A265AV, D278A, S283G  
UG270 UG270 None    S17N, M50L, I72V, G82S, T112V, I113V, T124A, T125A, V201I, L234I, D256E, V281M  
UG273 UG273 None    K14R, A21T, V31I, I72V, I84M, T112V, I113V, T124A, T125A, V126F, G134N, I135V, A169AS, V201I, K211R, K219KN, N222K, L234I, S283G  
UG274 UG274 None    S17N, M50L, I72V, T112V, I113V, S119G, T122I, T124A, T125A, G163A, V201I, T218I, L234I, D256E  
UG95_175 UG95_175 None    K14R, D25E, V31I, M50I, I84M, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, L234I, D278A  
UG95_306 UG95_306 None    S17N, I72V, A91T, E96D, L101I, T112V, S119G, T122I, T124A, T125A, V201I, T218I, L234I, S255N  
UG95_327 UG95_327 None    K14R, A21T, V31I, S39N, I72V, L101I, T112V, I113V, T124A, T125A, G134N, D167E, G193D, S195T, V201I, L234I, I268L, D270H  
UG95_422 UG95_422 None   T97A I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134S, K136Q, D167E, V201I, S283G  
US1 US1_2 None    S17N, I72V, I84V, T124A, M154I, K173R  
US2 US2_2 None    E10D, I72V, A265V  
US3 US3_2 None    V31I, I72V, L101I, S119G, T122I, T124N, A265V  
US4 US4_2 None    L101I, T122I, T124N, A265V  
ZAM18 ZAM18 None    D25E, V31I, M50T, V54I, I72V, I84M, E96D, F100Y, L101I, T112V, S119P, T124A, T125A, K127R, K136Q, V150A, V201I, I208M, T218I, L234I, R269K, D278A, S283G