Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Agwale (2006)
Title Genotypic and phenotypic analyses of human immunodeficiency virus type 1 in antiretroviral drug-naive Nigerian patients.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 18
NumPts 18
Subtype G, CRF02_AG, CRF25_cpx

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
AM_01-100083 01-100083 None None   V35T, V60I, D123E, K173T, Q174QK, D177E, T200A, I202V, Q207D, V245Q, E248D, D250E, A272P, T286A, E291D, V292I, I293V  
AM_01-100084 01-100084 None None   V21I, V35T, E40ED, V60I, K122E, D123N, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, V245Q, E248N, K249Q, D250E, A272P, K281R, E291D, V292I, I293V K73R 
AM_01-100085 01-100085 None None  V108I V35I, I135T, S162A, K173T, Q174K, D177E, I178M, V189I, T200A, Q207E, V245Q, E248D, K281R, T286A, E291D, V292I, I293V, P294T  
AM_01-100086 01-100086 None None   V35T, V60I, A98AS, L109I, D121H, K122E, D123S, Q174E, D177E, I195T, T200A, V245Q, E248D, D250E, A272P, T286TA, E291D, V292I, I293V  
AM_01-100087 01-100087 None None   V35T, E36D, D123E, K126KR, I135V, S162A, K173T, Q174K, D177E, G196E, Q207E, R211K, V245Q, S251N, K281R, T286A, E291D, V292I, I293V, P294T  
AM_01-100088 01-100088 None None   V35T, S48SA, V60VI, K122E, D123S, K173T, Q174K, D177E, I178M, T200E, Q207EG, R211K, F214FL, V245Q, E248N, D250DG, A272P, T286A, E291D, V292I, I293V, P294T  
AM_01-100089 01-100089 None None   V35T, V60I, A98S, K122E, D123S, K173A, Q174K, D177E, I178M, T200A, Q207N, R211K, V245Q, E248D, D250E, A272P, T286TA, E291D, V292I, I293V  
AM_01-100090 01-100090 None None   K20R, V35T, T39K, E40D, V60I, D123DE, K173T, Q174KR, D177E, T200A, Q207E, R211K, F214L, V245Q, D250E, S251Q, A272P, V276I, Q278H, T286A, E291D, V292I, I293V, E297AV, L301M  
AM_01-100091 01-100091 None None   V35T, T39N, E40D, V60I, K104R, D123E, I135V, K173A, Q174K, T200A, Q207E, R211K, V245Q, A272P, K281R, E291D, V292I, I293V, E297A  
AM_3-018899 3-018899 None None   V35X, E36D, T39TI, E40ED, V60I, K102KR, K104KR, I135V, S162A, K173T, Q174K, D177E, Q197L, T200A, Q207E, R211RK, V245K, T286A, E291D, V292I, I293V, P294IV  
AM_3-018910 3-018910 None None   P4S, V35T, E36ED, T39TA, I135V, S162A, K173T, Q174K, D177E, I178M, T200A, Q207E, V245EK, K281KR, T286A, E291D, V292I, I293V, P294T  
AM_3-022877 3-022877 None None   P4T, V35T, V60I, K122E, D123S, F171Y, K173T, Q174K, D177E, I178M, T200A, Q207E, V245Q, E248N, D250E, S251N, A272P, K277R, T286A, E291D, V292I, I293V  
AM_3-022878 3-022878 None None   K20R, V35T, I50V, V60I, T69S, W88C, K122E, D123S, I135V, S162C, K173A, Q174K, D177E, T200A, Q207E, R211K, L228LF, V245Q, E248D, D250E, A272Q, K277R, T286A, E291D, I293V  
AM_3-022879 3-022879 None None   V21VI, V35T, E40ED, V60I, K122E, D123S, K173T, Q174K, D177E, I178M, T200A, Q207A, R211X, V245Q, E248D, D250E, A272P, T286A, E291D, V292I, I293IV  
AM_3-022880 3-022880 None None   K20R, V35T, T39KR, E40ED, V60I, K104KR, K122E, D123DE, I135V, F171Y, K173T, Q174K, D177E, I178M, T200A, Q207E, R211RK, F214L, V245HQ, E248ED, D250E, S251D, A272P, Q278H, K281KR, T286A, E291D, V292I, I293V, E297A, L301M  
AM_3-022881 3-022881 None None  V106I V35T, T39TA, V60I, V90VI, K104KR, K122E, D123NS, K166R, K173T, Q174R, D177E, I178ILM, I195IV, T200A, Q207D, R211K, V245Q, E248D, D250E, A272P, K277R, T286A, E291D, V292I, I293V  
AM_3-022882 3-022882 None None   K20R, V35T, T39K, E40D, V60I, K102KQ, D121H, I135V, S162A, E169EA, K173E, Q174R, D177E, T200A, Q207E, R211K, F214L, V245Q, E248ED, S251D, A272P, Q278H, K281R, T286A, E291D, V292I, I293V, L301M D250V 
AM_3-022883 3-022883 None None   V35T, V60I, S68G, I135R, S162A, K173T, Q174R, D177E, I178L, T200A, Q207D, R211K, V245Q, E248D, D250E, A272P, T286A, E291D, V292I, I293V, P294T, E297A