Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Petch (2005)
Title Genotypic analysis of the protease and reverse transcriptase of HIV type 1 subtype C isolates from antiretroviral drug-naive adults in Malawi.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 21
NumPts 21
Subtype C

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
LP01 MAL-01RT None None   T39E, S48T, K122A, K173T, D177E, I178L, T200A, Q207E, R211K, V245Q L149LF 
LP02 MAL-02RT None None   T39E, S48T, V60VI, K122E, D123S, A158S, K166KR, T200A, Q207N, R211K, V245L  
LP03 MAL-03RT None None   T39E, S48T, E53ED, V60I, V118VI, K122E, D123G, E169A, K173T, T200A, Q207E, R211RK, F214FL, V245LM  
LP04 MAL-04RT None None   T39E, S48T, K122E, D123G, K173T, Q174QK, T200A, E203ED, Q207DE, V245L  
LP05 MAL-05RT None None  E138EA T39X, S48T, V60VI, K122E, D123G, K173A, T200A, E204K, Q207DE, R211K, F214FL, V245Q  
LP06 MAL-06RT None None   T39E, E40D, S48T, E53D, K122KE, D123DN, S162F, K166KR, K173A, D177E, T200S, Q207E, R211K, L228LQ, V245Q  
LP07 MAL-07RT None None   T39E, E40ED, S48T, D121DY, K122AEV, D123X, K173T, D177DE, T200A, Q207E, R211K, V245KQ  
LP08 MAL-08RT None None   T39E, E40D, S48T, K101KR, K122AV, D123X, K173T, D177E, T200A, Q207E, R211K, V245K  
LP09 MAL-09RT None None   T39E, S48T, K122E, D123X, F171Y, K173A, Q174K, D177E, I178IM, T200A, R211K, V245Q  
LP10 MAL-10RT None None   T39E, S48T, K122E, K173A, Q174K, D177E, T200A, Q207E, R211K, V245KQ  
LP11 MAL-11RT None None  E138A T39E, S48T, V60I, K103KR, K122E, D123S, T139V, K173T, Q174K, T200A, Q207E, R211K, F214L, V245Q  
LP12 MAL-12RT None None   T39E, S48T, K122E, D123S, K173T, D177E, G196R, T200A, Q207K, R211K, V245Q  
LP13 MAL-13RT None None   T39E, S48T, K122E, D123DG, T165TI, K173T, T200A, Q207E, V245KQ  
LP14 MAL-14RT None None   T39E, E40D, S48T, E53D, V60VI, K122E, I135IT, S162Y, K166R, K173IT, Q174KR, D177E, T200A, Q207E, R211K, V245Q  
LP15 MAL-15RT None None   T39E, S48T, K122E, T165TI, K173A, Q174K, D177E, I195IL, T200A, Q207E, V245Q  
LP16 MAL-16RT None None   T39E, S48T, D121HY, K122E, D123DG, I135IV, S162X, K173A, D177E, T200AE, Q207A, V245HQ  
LP17 MAL-17RT None None   T39E, S48T, K122E, K173A, Q174QK, D177E, I178IM, Q197L, T200EK, E203D, Q207E, R211K, V245Q  
LP18 MAL-18RT None None   T39E, S48T, K122E, K173A, Q174QK, D177E, I178IM, Q197L, T200EK, E203D, Q207E, R211K, V245Q  
LP19 MAL-19RT None None   T39E, S48T, K122E, D123S, K166R, T200AE, E204K, Q207E, R211K, F214L, V245L  
LP20 MAL-20RT None None   T39E, S48T, K122KE, K173A, Q174K, D177E, T200A, Q207E, R211K, P243A, V245Q  
LP21 MAL-21RT None None   T39E, E40D, S48T, K122E, D123G, K166KR, K173A, D177E, D192N, T200A, I202IV, Q207E, R211K, V245Q L149LF