Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Carr (2005)
Title HIV subtype and drug resistance patterns among drug-naive infected persons in Jos, Nigeria.
Citation Direct Genbank Submission
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 23
NumPts 23
Subtype G, CRF02_AG, C, A

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
01NGPL0669 01NGPL0669 None None   V35T, K49R, V60I, K122E, D123S, K173T, D177E, I178M, T200A, Q207N, V245Q, E248D, D250E, S251N, E291D, V292I, I293V, K311R, I329V, Q334P, G335D, F346Y, R356K, M357R, R358G, G359S, K366R, T386V, Q394R, A400V, E404D, E413D, Q428R, K431T, V435P, R461K, R463K, V467I, S468T, L469I, T470Q, D471E, Q480H, H483Q, L491S, K512R, S519N, K530R, A534T, A554N  
01NGPL0674 01NGPL0674 None None   V35T, E40D, K49R, V60I, K102R, K104R, K122E, D123N, A158S, K173T, Q174K, D177E, T200A, Q207E, R211K, V245Q, E248N, D250E, A272P, T286A, E291D, V292I, I293V, P294T, Q334L, G335D, F346H, R356K, M357R, R358G, G359T, T377Q, T386V, Q394R, A400V, E413D, K431T, V435P, F440Y, L452V, R461K, R463K, V466I, V467L, S468T, L469I, T470Q, D471E, Q480H, H483Q, L491S, K512R, E516A, S519N, A534T, A554S  
01NGPL0760 01NGPL0760 None None   V35T, V60I, K122E, D123S, K173T, Q174K, D177E, I178M, T200A, Q207E, V245Q, E248N, A272P, I274V, T286A, E291D, V292I, I293V, P321S, D324E, I329V, Q334L, G335D, F346Y, R356K, M357R, R358G, G359S, A371V, A376S, T386V, K390R, Q394R, A400V, E413D, Q428R, K431T, V435P, F440Y, R461K, R463K, V467I, S468T, L469I, T470Q, D471E, Q480H, H483Q, L491S, S519N, K530R, A534T, A554S, I556V  
01NGPL148 01NGPL148 None None   V35T, V60I, I135V, K173T, Q174K, D177E, I195T, T200A, Q207D, V245Q, S251N  
01NGPL209 01NGPL209 None None   V35T, V60I, D121H, K122E, I135V, I142IV, K173L, Q174KR, D177E, I178L, T200A, Q207D, V245Q, D250E, S251D  
01NGPL338 01NGPL338 None None M184V K103N K20R, V35T, T39K, E40D, V60I, K104R, I135T, K173A, Q174K, D177E, I178M, T200A, Q207A, R211K, F214L, V245Q, E248D, D250E, S251N  
01NGPL364 01NGPL364 None None   V35T, E36A, T39E, E40D, S48T, D121H, K122E, A158S, K173I, D177E, Q197K, T200A, Q207D, R211K, K238R, P243S, V245Q, E248D C38Y 
01NGPL368 01NGPL368 None None   K20R, V35T, T39K, E40D, V60I, K104R, T139I, K173I, Q174K, D177E, T200A, Q207K, R211E, F214L, V245Q, E248D, D250E, S251A  
01NGPL490 01NGPL490 None None   V35T, E36A, T39K, K43E, K122E, I135T, I142V, S162Y, K173A, D177E, V179I, E204Q, Q207E, R211K, F214L, V245K  
01NGPL567 01NGPL567 None None   E28G, V35T, V60I, D121H, K122E, D123S, T139K, K173T, Q174K, D177E, I178M, V189I, T200A, Q207E, R211K, P243A, V245Q, E248D, D250E, S251D  
01NGPL601 01NGPL601 None None   P4H, K20R, V35T, E36D, D123E, S162A, F171Y, K173T, Q174K, D177E, I178M, T200A, Q207E, R211K, F214L, V245Q, E248D, D250E, S251V  
01NGPL644 01NGPL644 None None   V35T, E53D, I135V, S162A, K173I, Q174K, D177E, I178M, T200A, Q207K, R211E, K238R, V245E  
01NGPL658 01NGPL658 None None   V35T, E36A, T39E, S48T, K122E, D123S, K173T, Q174N, I178L, T200A, Q207E, R211K, P243T, V245Q  
01NGPL669 01NGPL669 None None   V35T, K49R, V60I, K122E, D123S, K173T, D177E, I178M, T200A, Q207N, V245Q, E248D, D250E, S251N  
01NGPL674 01NGPL674 None None   V35T, E40D, K49R, V60I, K102R, K104R, K122E, D123N, A158S, K173T, Q174K, D177E, T200A, Q207E, R211K, V245Q, E248N, D250E  
01NGPL710 01NGPL710 None None   V21I, V35T, T39M, I135V, S162A, K173T, Q174S, D177E, T200A, Q207G, R211K, V245K, D250E, S251D  
01NGPL754 01NGPL754 None None   V35K, E36D, D123E, I135T, S162A, K173T, Q174E, D177G, V189I, T200A, I202V, Q207K, V245Q, D250E  
01NGPL760 01NGPL760 None None   V35T, V60I, K122E, D123S, K173T, Q174K, D177E, I178M, T200A, Q207E, V245Q, E248N  
01NGPL800 01NGPL800 None None   K20R, V35T, T39K, E40D, K43A, V60I, K166R, K173A, Q174K, D177E, I178M, T200A, Q207E, R211K, F214L, V245Q, E248N, D250E, S251T  
PL0209P PL0209P None None   V35T, V60I, D121H, K122E, I135V, I142IV, K173L, Q174KR, D177E, I178L, T200A, Q207D, V245Q, D250E, S251D, Q258QR, K277R, T286A, E291D, V292I, I293V, I329V, Q334L, G335D, F346Y, R356K, M357R, R358G, G359S, A376S, T377M, T386V, Q394K, A400I, E413D, K431T, V435L, F440Y, V458I, R461K, R463K, V467I, S468T, L469I, T470Q, D471E, Q480H, H483IL, Q487K, L491S, K512R, S519N, E529D, V531I, A534T, A554N  
PL0567 PL0567 None None   E28G, V35T, V60I, D121H, K122E, D123S, T139K, K173T, Q174K, D177E, I178M, V189I, T200A, Q207E, R211K, P243A, V245Q, E248D, D250E, S251D, A272S, T286A, E291D, V292I, I293V, P294S, E300A, Q334L, G335D, F346Y, R356K, M357R, R358G, G359S, A376S, T386V, Q394R, A400V, E413D, K431T, V435P, R461K, R463K, V466I, V467I, S468T, L469I, T470Q, Q480H, H483Q, L491S, K512R, S519N, A534T, A554R  
PL0710 PL0710 None None   V21I, V35T, T39M, I135V, S162A, K173T, Q174S, D177E, T200A, Q207G, R211K, V245K, D250E, S251D, K275R, V276I, T286A, E291D, V292I, I293V, P294T, S322T, I326V, G335D, R356K, M357K, G359S, A371V, I375V, A376T, T377V, K390R, A400T, T403V, E432D, V435P, A437I, S468T, D471E, Q480H, L491S, E492Q, K512R, L517I, S519N, Q524K, K527E, E529D, A534S, A554N, I556V  
PL0754 PL0754 None None   V35K, E36D, D123E, I135T, S162A, K173T, Q174E, D177G, V189I, T200A, I202V, Q207K, V245Q, D250E, T286A, E291D, V292I, I293V, P294T, S322T, G335D, R356K, M357K, G359S, T369A, E370A, K374R, I375V, A376S, K385R, K390R, K395R, T403M, V417I, E432D, D471E, Q480H, H483Y, L491S, K512R, S519N, Q524K, K527G, E529D, A534S, A554N, K558R, V559I