Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Rhee (2005)
Title HIV-1 protease and reverse transcriptase mutations: Correlations with antiretroviral therapy in subtype B isolates and implications for drug-resistance surveillance.
Citation J Infect Dis
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 8698
NumPts 5325
Subtype B, D, F, CRF12_BF, CRF05_DF, B + F, CRF45_cpx, C, B + CRF01_AE, B + C

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 8698 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
2-33-107 pt233107 None    E35D, N37S, R41K, Y59H, I62V, L63P, A71V, V77I, I93L  
2-33-108 pt233108 None    I13V, N37S, L63P  
2-33-109 pt233109 None    I13V, E35D, L63P  
2-33-110 pt233110 None    I64V  
CA358 CA651 None    E35D, N37X, R41K  
  CA652 SQV 24 L90M  E35D, N37X, R41K, L63P  
CAM-1 CAM1 None    L63P  
DW-PtB PtB None      
DW-PtC PtC None    T12A, I15V, E35D, N37S, R41K, Q61E, L63P Q7QP 
DW-PtD PtD None    M36I, R41K, I64V  
EV10 EV10_W0 None    R41K, K55R, L63Q, I64V  
  EV10_W24 SQV 24 L90M  T31X, R41K, K55R, L63Q, I64V, T74A  
EV13 EV13_W0 None    K14R, L19I, L63P  
  EV13_W24 SQV 24   K14R, L63P, I93L  
EV25 EV25_W0 None    M36V, L38F, I64V  
  EV25_W24 SQV 24   M36V  
EV28 EV28_W0 None    L38F, K43KN  
  EV28_W24 SQV 24 L90M  R41K, K43KN, R57K, L63P, I64M  
EV31 EV31_W0 None    E35D, I64V  
  EV31_W24 SQV 24   E35D, N37S  
EV39 EV39_W0 None    I15V, I93L  
  EV39_W24 SQV 24   I93L  
PO-Pt1 pt02383 None    I13V, N37S, L63P  
pt-A ptAW0
Consensus 		None    L10V, T12I, G16E, R57K, I64V, I72IT, R87RK  
  clone: 1 None    L10V, T12I, G16E, R57K, I64V  
  clone: 10 None    L10V, T12I, G16E, R57K, I64V  
  clone: 11 None    L10V, T12I, G16E, R57K, I64V  
  clone: 12 None    L10V, T12I, G16E, R57K, I64V, I72T  
  clone: 2 None    L10V, T12I, G16E, R57K, I64V  
  clone: 3 None    L10V, T12I, G16E, R57K, I64V  
  clone: 4 None    L10V, T12I, G16E, R57K, I64V, R87K  
  clone: 7 None    L10V, T12I, G16E, R57K, I64V  
  clone: 8 None    L10V, T12I, G16E, R57K, I64V  
  clone: 9 None    L10V, T12I, G16E, R57K, I64V  
  ptAW12
Consensus 		IDV 12 M46I  L10R, R57K, I64V, R87RK  
  clone: 10 IDV 12 M46I  L10R, R57K, I64V  
  clone: 11 IDV 12 M46I  L10R, R57K, I64V  
  clone: 12 IDV 12 M46I  L10R, R57K, I64V  
  clone: 2 IDV 12 M46I  L10R, R57K I64AV 
  clone: 3 IDV 12 M46I  L10R, R57K, I64V  
  clone: 4 IDV 12 M46I  L10R, R57K, I64V  
  clone: 5 IDV 12 M46I  L10R, R57K, I64V, R87K  
  clone: 6 IDV 12 M46I  L10R, R57K, I64V  
  clone: 7 IDV 12 M46I  L10R, R57K, I64V  
  clone: 8 IDV 12 M46I  L10R, R57K, I64V  
  clone: 9 IDV 12 M46I  L10R, R57K, I64V  
  ptAW24
Consensus 		IDV 24 M46MI, V82VT, I84IV, N88NS  L10X, T12TA, I15IM, E21EK, K55KR, R57RK, L63LP, I64IV  
  clone: 1 IDV 24 M46I, V82T, I84V, N88S  L10R, L63P  
  clone: 10 IDV 24 M46I, V82T  L10R, K55R, R57K, I64V  
  clone: 11 IDV 24   L10V, T12A, E21K, I64V  
  clone: 2 IDV 24 V82T  L10V, T12A, E21K, K55R, R57K, I64V  
  clone: 3 IDV 24 V82T  L10R, I15M, I64V  
  clone: 4 IDV 24 M46I, V82T  L10R, K55R, R57K, I64V  
  clone: 5 IDV 24 V82T, I84V  L10V, T12A, E21K, L63P  
  clone: 6 IDV 24 M46I, V82T, I84V  L10R, L63P  
  clone: 7 IDV 24 M46I, V82T  L10R, L63P  
  clone: 8 IDV 24   L10V, T12A, E21K, I64V  
  clone: 9 IDV 24 M46I, V82T, I84V  L10R, K55R, R57K, I64V  
  ptAW37
Consensus 		IDV 37 M46I, I54IV, V82T, I84IV L24I L10V, T12I, N37D, L63P, A71VI  
  clone: 1 IDV 37 M46I, I54V, V82T L24I L10V, T12I, N37D, L63P, A71V  
  clone: 2 IDV 37 M46I, V82T, I84V L24I L10V, T12I, N37D, L63P, A71V  
  clone: 3 IDV 37 M46I, V82T, I84V L24I L10V, T12I, N37D, L63P, A71V  
  clone: 4 IDV 37 M46I, V82T, I84V L24I L10V, T12I, N37D, L63P, A71V  
  clone: 5 IDV 37 M46I, V82T, I84V L24I L10V, T12I, N37D, L63P, A71V  
  clone: 6 IDV 37 M46I, V82T, I84V L24I L10V, T12I, N37D, L63P, A71V  
  clone: 7 IDV 37 M46I, V82T L24I L10V, T12I, N37D, L63P, A71V  
  clone: 8 IDV 37 M46I, V82T, I84V L24I L10V, T12I, N37D, L63P, A71I  
  ptAW40
Consensus 		IDV 40 M46I, I54IV, V82T, I84IV L24LI, G73GS L10X, T12TI, N37ND, P39PA, L63P, A71AV, F99FL G94GS 
  clone: 1 IDV 40 M46I, V82T, I84V  L10R, P39A, L63P, F99L  
  clone: 2 IDV 40 M46I, V82T, I84V  L10R, L63P  
  clone: 3 IDV 40 M46I, V82T, I84V L24I L10V, T12I, N37D, L63P  
  clone: 4 IDV 40 M46I, V82T, I84V  L10R, L63P  
  clone: 5 IDV 40 M46I, I54V, V82T L24I, G73S L10V, T12I, N37D, L63P, A71V  
  clone: 6 IDV 40 M46I, V82T, I84V  L10R, L63P G94S 
  clone: 7 IDV 40 M46I, V82T, I84V  L10R, L63P  
  clone: 8 IDV 40 M46I, V82T, I84V L24I L10V, T12I, N37D, L63P, A71V  
  ptAW44
Consensus 		IDV 44 M46IV, I54V, V82T L24I, G73GS L10V, K20X, E21EK, E35EK, N37ND, K55KR, R57RK, L63P, E65EK, I66IF, A71V, I72IV T31TI, C95CR 
  clone: 1 IDV 44 M46I, I54V, V82T L24I L10V, K20M, N37D, L63P, A71V  
  clone: 2 IDV 44 I54V, V82T L24I, M46V L10V, K20I, N37D, L63P, A71V T31I, C95R 
  clone: 3 IDV 44 M46I, I54V, V82T L24I L10V, K20M, E35K, N37D, L63P, I66F, A71V  
  clone: 4 IDV 44 M46I, I54V, V82T L24I L10V, K20M, N37D, L63P, I66F, A71V, I72V  
  clone: 5 IDV 44 M46I, I54V, V82T L24I, G73S L10V, K20M, N37D, L63P, A71V  
  clone: 6 IDV 44 M46I, I54V, V82T L24I L10V, K20M, N37D, L63P, I66F, A71V, I72V  
  clone: 7 IDV 44 M46I, I54V, V82T L24I L10V, K20I, E21K, K55R, R57K, L63P, E65K, A71V  
  ptAW52
Consensus 		IDV 52 M46I, I54IV, V82T, I84IV L24LI, G73GS L10RV, K20KI, N37ND, K55KR, R57RK, L63P, A71AVI C95CR 
  clone: 1 IDV 52 M46I, I54V, V82T  L10R, K55R, L63P  
  clone: 2 IDV 52 M46I, I54V, V82T L24I L10R, K20I, K55R, L63P C95R 
  clone: 3 IDV 52 M46I, I54V, V82T L24I, G73S L10V, K20I, N37D, L63P, A71V  
  clone: 4 IDV 52 M46I, V82T, I84V  L10R, L63P  
  clone: 6 IDV 52 M46I, I54V, V82T L24I, G73S L10R, K20I, L63P, A71V  
  clone: 7 IDV 52 M46I, I54V, V82T L24I L10R, K20I, K55R, R57K, L63P, A71I  
  clone: 8 IDV 52 M46I, V82T  L10R, K55R, R57K, L63P  
pt-B ptBW0
Consensus 		None    E35D, M36I, R41K, I64V  
  clone: 1 None    E35D, M36I, R41K, I64V  
  clone: 2 None    E35D, M36I, R41K, I64V  
  clone: 3 None    E35D, M36I, R41K, I64V  
  clone: 4 None    E35D, M36I, R41K, I64V  
  clone: 5 None    E35D, M36I, R41K, I64V  
  clone: 6 None    E35D, M36I, R41K, I64V  
  clone: 7 None    E35D, M36I, R41K, I64V  
  clone: 8 None    E35D, M36I, R41K, I64V  
  ptBW24
Consensus 		IDV 24 I54IV, V82VA  L10LI, I13IM, G16GR, K20KM, E35D, M36MI, R41K, I64V, T91TI, I93IL, T96TA  
  clone: 1 IDV 24 V82A  L10I, K20M, E35D, M36I, R41K, I64V  
  clone: 2 IDV 24   E35D, R41K, I64V, I93L, T96A  
  clone: 3 IDV 24 V82A  L10I, K20M, E35D, M36I, R41K, I64V  
  clone: 4 IDV 24   L10I, E35D, M36I, R41K, I64V  
  clone: 5 IDV 24 V82A  L10I, K20M, E35D, M36I, R41K, I64V, T91I  
  clone: 6 IDV 24 V82A  L10I, I13M, K20M, E35D, M36I, R41K, I64V  
  clone: 7 IDV 24 I54V, V82A  K20M, E35D, M36I, R41K, I64V  
  clone: 8 IDV 24 V82A  L10I, K20M, E35D, M36I, R41K, I64V  
  clone: 9 IDV 24 V82A  G16R, E35D, M36I, R41K, I64V  
  ptBW32
Consensus 		IDV 32 I54V, V82A  L10I, Q18QH, K20M, E35D, M36I, R41K, L63LP, I64IV, A71ATV G68GR 
  clone: 1 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 10 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 11 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, I64V  
  clone: 12 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 3 IDV 32 I54V, V82A  L10I, Q18H, K20M, E35D, M36I, R41K, I64V G68R 
  clone: 4 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 5 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 6 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 7 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 8 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 9 IDV 32 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  ptBW36
Consensus 		IDV 36 I54V, V82A  L10I, K20M, E35D, M36I, N37ND, R41K, I62IV, L63P, A71T  
  clone: 1 IDV 36 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 2 IDV 36 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 3 IDV 36 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 4 IDV 36 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 5 IDV 36 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 6 IDV 36 I54V, V82A  L10I, K20M, E35D, M36I, R41K, I62V, L63P, A71T  
  clone: 7 IDV 36 I54V, V82A  L10I, K20M, E35D, M36I, N37D, R41K, L63P, A71T  
  clone: 8 IDV 36 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  ptBW40
Consensus 		IDV 40 I54V, V82A  L10I, E35D, M36I, N37ND, R41K, L63P, A71AT K20MN 
  clone: 1 IDV 40 I54V, V82A  L10I, K20M, E35D, M36I, N37D, R41K, L63P  
  clone: 2 IDV 40 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 3 IDV 40 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 4 IDV 40 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 5 IDV 40 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P  
  clone: 6 IDV 40 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 7 IDV 40 I54V, V82A  L10I, K20M, E35D, M36I, R41K, L63P, A71T  
  clone: 8 IDV 40 I54V, V82A  L10I, E35D, M36I, R41K, L63P, A71T K20N 
  ptBW48
Consensus 		IDV 48 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 1 IDV 48 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 2 IDV 48 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 3 IDV 48 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 4 IDV 48 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 5 IDV 48 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 6 IDV 48 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 7 IDV 48 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 8 IDV 48 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  ptBW52
Consensus 		IDV 52 I54V, V82A L24I L10I, K20M, E35D, M36I, R57RK, L63P, A71V, L89LF R41KM, W42WD, K43KG, C67CR, I84IL 
  clone: 1 IDV 52 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 2 IDV 52 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 4 IDV 52 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 5 IDV 52 I54V, V82A L24I L10I, K20M, E35D, M36I, L63P, A71V R41M, W42D, K43G 
  clone: 6 IDV 52 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, R57K, L63P, A71V, L89F C67R, I84L 
  clone: 7 IDV 52 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 8 IDV 52 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
  clone: 9 IDV 52 I54V, V82A L24I L10I, K20M, E35D, M36I, R41K, L63P, A71V  
pt-C ptCW44
Consensus 		IDV 44 V32VI, V82VA, L90LM  L10LI, N37NC, M46X, I62IV, L63X, I64IM, A71AV, I72IV, V77VI, I85IV, Q92QR, I93IL  
  clone: 1 IDV 44 V32I, M46I, V82A, L90M  L63P, I64M, A71V, I72V  
  clone: 2 IDV 44 V32I, M46L, V82A  L63A, A71V  
  clone: 3 IDV 44 V32I, V82A  L63P, I64M, A71V, I72V, Q92R  
  clone: 4 IDV 44 V32I, M46I, V82A  L63P, I64M, A71V, I72V, Q92R  
  clone: 5 IDV 44 V32I, M46I, V82A  L63P, I64M, A71V, I72V  
  clone: 6 IDV 44 M46I  L10I, N37C, I62V, L63S, V77I, I85V, I93L  
  clone: 7 IDV 44 V32I, M46L, V82A  L63A, A71V  
  clone: 8 IDV 44     
pt-D ptDW24
Consensus 		IDV 24   I13V, L19LP, L63P, I64V, Q92K, I93L  
  clone: 1 IDV 24   I13V, L63P, I64V, Q92K, I93L  
  clone: 2 IDV 24   I13V, L63P, I64V, Q92K, I93L  
  clone: 3 IDV 24   I13V, L19P, L63P, I64V, Q92K, I93L  
  clone: 4 IDV 24   I13V, L63P, I64V, Q92K, I93L  
  clone: 5 IDV 24   I13V, L63P, I64V, Q92K, I93L  
  clone: 6 IDV 24   I13V, L63P, I64V, Q92K, I93L  
  ptDW36
Consensus 		IDV 36 V32I, M46I, I47V, L90LM  I13V, L63P, I64V, R87RK, Q92QK, I93L  
  clone: 1 IDV 36 V32I, M46I, I47V  I13V, L63P, I64V, Q92K, I93L  
  clone: 2 IDV 36 V32I, M46I, I47V  I13V, L63P, I64V, Q92K, I93L  
  clone: 3 IDV 36 V32I, M46I, I47V, L90M  I13V, L63P, I64V, R87K, I93L  
  clone: 4 IDV 36 V32I, M46I, I47V  I13V, L63P, I64V, Q92K, I93L  
  clone: 5 IDV 36 V32I, M46I, I47V  I13V, L63P, I64V, Q92K, I93L  
  clone: 6 IDV 36 V32I, M46I, I47V  I13V, L63P, I64V, Q92K, I93L  
  clone: 7 IDV 36 V32I, M46I, I47V  I13V, L63P, I64V, Q92K, I93L  
  ptDW44
Consensus 		IDV 44 V32VI, M46I, I47IV, L90LM  I13V, L19LV, L63P, I64V, Q92K, I93L  
  clone: 1 IDV 44 M46I, L90M  I13V, L19V, L63P, I64V, Q92K, I93L  
  clone: 2 IDV 44 V32I, M46I, I47V  I13V, L63P, I64V, Q92K, I93L  
  clone: 3 IDV 44 V32I, M46I, L90M  I13V, L63P, I64V, Q92K, I93L  
  clone: 4 IDV 44 V32I, M46I, I47V, L90M  I13V, L63P, I64V, Q92K, I93L  
  clone: 5 IDV 44 M46I, L90M  I13V, L63P, I64V, Q92K, I93L  
  clone: 7 IDV 44 V32I, M46I, I47V  I13V, L63P, I64V, Q92K, I93L  
  clone: 8 IDV 44 M46I, I47V, L90M  I13V, L63P, I64V, Q92K, I93L  
  clone: 9 IDV 44 M46I  I13V, L63P, I64V, Q92K, I93L  
pt-E ptEW0
Consensus 		None    I15V, M36MI, P39S, I62V, L63P T80TA 
  clone: 1 None    I15V, M36I, P39S, I62V, L63P  
  clone: 2 None    I15V, P39S, I62V, L63P  
  clone: 3 None    I15V, P39S, I62V, L63P  
  clone: 4 None    I15V, P39S, I62V, L63P  
  clone: 5 None    I15V, P39S, I62V, L63P  
  clone: 6 None    I15V, P39S, I62V, L63P  
  clone: 8 None    I15V, P39S, I62V, L63P T80A 
  ptEW16
Consensus 		IDV 16   I15V, L33LV, P39S, I62V, L63P  
  clone: 1 IDV 16   I15V, P39S, I62V, L63P  
  clone: 2 IDV 16   I15V, L33V, P39S, I62V, L63P  
  clone: 4 IDV 16   I15V, P39S, I62V, L63P  
  clone: 5 IDV 16   I15V, P39S, I62V, L63P  
  clone: 6 IDV 16   I15V, P39S, I62V, L63P  
  clone: 7 IDV 16   I15V, P39S, I62V, L63P  
  clone: 8 IDV 16   I15V, P39S, I62V, L63P  
  ptEW24
Consensus 		IDV 24   P39PS, L63P, I93L L38LS, G52GD, I85IT 
  clone: 2 IDV 24   P39S, L63P, I93L L38S, I85T 
  clone: 3 IDV 24   P39S, L63P, I93L G52D 
  clone: 4 IDV 24   P39S, L63P, I93L  
  clone: 5 IDV 24   L63P, I93L  
  clone: 6 IDV 24   P39S, L63P, I93L  
  clone: 7 IDV 24   P39S, L63P, I93L  
  clone: 8 IDV 24   P39S, L63P, I93L  
  ptEW32
Consensus 		IDV 32 I54V, V82A L24I L10I, I15V, M36I, P39S, I62V, L63P, A71V P9PS, R41RG 
  clone: 1 IDV 32 I54V, V82A L24I L10I, I15V, M36I, P39S, I62V, L63P, A71V  
  clone: 2 IDV 32 I54V, V82A L24I L10I, I15V, M36I, P39S, I62V, L63P, A71V  
  clone: 3 IDV 32 I54V, V82A L24I L10I, I15V, M36I, P39S, I62V, L63P, A71V  
  clone: 4 IDV 32 I54V, V82A L24I L10I, I15V, M36I, P39S, I62V, L63P, A71V  
  clone: 5 IDV 32 I54V, V82A L24I L10I, I15V, M36I, P39S, I62V, L63P, A71V P9S 
  clone: 6 IDV 32 I54V, V82A L24I L10I, I15V, M36I, P39S, I62V, L63P, A71V R41G 
  clone: 7 IDV 32 I54V, V82A L24I L10I, I15V, M36I, P39S, I62V, L63P, A71V  
  clone: 8 IDV 32 I54V, V82A L24I L10I, I15V, M36I, P39S, I62V, L63P, A71V  
pt-E-DW PtE None    K14R, L19LI, L63P  
pt-F ptFW44
Consensus 		IDV 44   L19I, N37S, R41K, L63P K45KE 
  clone: 1 IDV 44   L19I, N37S, R41K, L63P  
  clone: 2 IDV 44   L19I, N37S, R41K, L63P  
  clone: 3 IDV 44   L19I, N37S, R41K, L63P K45E 
  clone: 4 IDV 44   L19I, N37S, R41K, L63P  
  clone: 5 IDV 44   L19I, N37S, R41K, L63P  
  clone: 6 IDV 44   L19I, N37S, R41K, L63P  
pt-G ptGW16
Consensus 		IDV 16 V32I, V82A  W6WG, R8RP, I15V, G16GA, A22AV, E35D, M36I, L63P, A71V  
  clone: 1 IDV 16 V32I, V82A  W6G, R8P, I15V, A22V, E35D, M36I, L63P, A71V  
  clone: 2 IDV 16 V32I, V82A  I15V, E35D, M36I, L63P, A71V  
  clone: 3 IDV 16 V32I, V82A  I15V, E35D, M36I, L63P, A71V  
  clone: 4 IDV 16 V32I, V82A  I15V, E35D, M36I, L63P, A71V  
  clone: 5 IDV 16 V32I, V82A  I15V, E35D, M36I, L63P, A71V  
  clone: 6 IDV 16 V32I, V82A  I15V, G16A, E35D, M36I, L63P, A71V  
  clone: 7 IDV 16 V32I, V82A  I15V, E35D, M36I, L63P, A71V  
  clone: 8 IDV 16 V32I, V82A  I15V, E35D, M36I, L63P, A71V  
pt-H ptHW0
Consensus 		None  I84IV, N88NS  L19LQ, L33V, N37CS, R41RK, I62IV, L63LP, I64IV, T96TA  
  clone: 1 None    L33V, N37C, L63P  
  clone: 2 None    L33V, N37S, L63P  
  clone: 3 None  N88S  L33V, N37C, L63P  
  clone: 4 None  I84V  L33V, N37C, R41K, L63P  
  clone: 5 None    L19Q, L33V, N37C, L63P  
  clone: 7 None    L33V, N37C, R41K, I62V, I64V  
  clone: 8 None    L33V, N37C, R41K, L63P, T96A  
  ptHW12
Consensus 		IDV 12 V82VT, L90M G73GS I13IV, D25DN, L33V, N37C, I62V, L63P, A71V, I72M V56VA 
  clone: 1 IDV 12 V82T, L90M  I13V, L33V, N37C, I62V, L63P, A71V, I72M V56A 
  clone: 2 IDV 12 L90M G73S L33V, N37C, I62V, L63P, A71V, I72M  
  clone: 3 IDV 12 V82T, L90M  I13V, L33V, N37C, I62V, L63P, A71V, I72M  
  clone: 4 IDV 12 V82T, L90M  I13V, L33V, N37C, I62V, L63P, A71V, I72M  
  clone: 5 IDV 12 L90M G73S L33V, N37C, I62V, L63P, A71V, I72M  
  clone: 6 IDV 12 V82T, L90M  L33V, N37C, I62V, L63P, A71V, I72M  
  clone: 7 IDV 12 L90M G73S I13V, L33V, N37C, I62V, L63P, A71V, I72M  
  clone: 8 IDV 12 L90M G73S D25N, L33V, N37C, I62V, L63P, A71V, I72M  
pt-I ptIW0
Consensus 		None  I47IV  E35D, N37D, L63P, I64IL P9PL, D30DG 
  clone: 1 None    E35D, N37D, L63P P9L 
  clone: 2 None    E35D, N37D, L63P, I64L  
  clone: 3 None    E35D, N37D, L63P, I64L D30G 
  clone: 4 None    E35D, N37D, L63P, I64L  
  clone: 7 None  I47V  E35D, N37D, L63P, I64L  
  clone: 8 None    E35D, N37D, L63P  
  ptIW12
Consensus 		IDV 12 I54IV, V82A  E35D, N37DE, L63P, I64IL I84IK 
  clone: 1 IDV 12 I54V, V82A  E35D, N37D, L63P  
  clone: 2 IDV 12 V82A  E35D, N37E, L63P, I64L  
  clone: 3 IDV 12 I54V, V82A  E35D, N37D, L63P  
  clone: 4 IDV 12 I54V, V82A  E35D, N37D, L63P I84K 
  clone: 5 IDV 12 I54V, V82A  E35D, N37D, L63P  
  clone: 6 IDV 12 I54V, V82A  E35D, N37D, L63P  
  ptIW16
Consensus 		IDV 16 M46I, V82VA L24LI L10X, E35D, N37D, L63P, T74TS, Q92QK, F99FL  
  clone: 1 IDV 16 M46I, V82A L24I L10I, E35D, N37D, L63P, T74S  
  clone: 2 IDV 16 M46I  L10H, E35D, N37D, L63P, Q92K  
  clone: 3 IDV 16 M46I  L10H, E35D, N37D, L63P, Q92K  
  clone: 4 IDV 16 M46I  L10H, E35D, N37D, L63P, Q92K  
  clone: 5 IDV 16 M46I, V82A L24I L10I, E35D, N37D, L63P, T74S  
  clone: 6 IDV 16 M46I  L10H, E35D, N37D, L63P, Q92K, F99L  
pt-J ptJW0
Consensus 		None    W6WR, L10LP, Q18E, K20KR, L33V, E35D, N37S, L63P, L89M, I93L  
  clone: 1 None    Q18E, L33V, E35D, N37S, L63P, L89M, I93L  
  clone: 2 None    Q18E, L33V, E35D, N37S, L63P, L89M, I93L  
  clone: 3 None    Q18E, L33V, E35D, N37S, L63P, L89M, I93L  
  clone: 4 None    W6R, L10P, Q18E, K20R, L33V, E35D, N37S, L63P, L89M, I93L  
  clone: 5 None    Q18E, L33V, E35D, N37S, L63P, L89M, I93L  
  clone: 6 None    Q18E, L33V, E35D, N37S, L63P, L89M, I93L  
  clone: 7 None    Q18E, L33V, E35D, N37S, L63P, L89M, I93L  
  clone: 8 None    Q18E, L33V, E35D, N37S, L63P, L89M, I93L  
  ptJW24
Consensus 		IDV 24 I54IV, V82F  Q2QH, I3IF, T4TS, L10I, Q18E, K20R, L33I, E35D, M36I, N37S, I50IN, L63P, L89M, I93L  
  clone: 1 IDV 24 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 10 IDV 24 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 11 IDV 24 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 12 IDV 24 I54V, V82F  Q2H, I3F, L10I, Q18E, K20R, L33I, E35D, M36I, N37S, I50N, L63P, L89M, I93L  
  clone: 2 IDV 24 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 5 IDV 24 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 6 IDV 24 V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 7 IDV 24 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 8 IDV 24 I54V, V82F  T4S, L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 9 IDV 24 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  ptJW32
Consensus 		IDV 32 I54V, V82F, L90LM  L5LP, L10I, Q18E, K20R, L33I, E35D, M36I, N37S, D60DE, Q61QL, L63P, L89M, I93L  
  clone: 2 IDV 32 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, D60E, L63P, L89M, I93L  
  clone: 3 IDV 32 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, D60E, L63P, L89M, I93L  
  clone: 4 IDV 32 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, D60E, L63P, L89M, I93L  
  clone: 5 IDV 32 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, Q61L, L63P, L89M, I93L  
  clone: 6 IDV 32 I54V, V82F  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 7 IDV 32 I54V, V82F  L5P, L10I, Q18E, K20R, L33I, E35D, M36I, N37S, D60E, L63P, L89M, I93L  
  ptJW36
Consensus 		IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, T91TA, I93L, T96TA  
  clone: 1 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 10 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 11 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 3 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 4 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 5 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 6 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 7 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 8 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, I93L  
  clone: 9 IDV 36 I54V, V82F, L90M  L10I, Q18E, K20R, L33I, E35D, M36I, N37S, L63P, L89M, T91A, I93L, T96A  
pt-K ptKW0
Consensus 		None    N37S, I64V, V77I  
  clone: 1 None    N37S, I64V, V77I  
  clone: 2 None    N37S, I64V, V77I  
  clone: 3 None    N37S, I64V, V77I  
  clone: 4 None    N37S, I64V, V77I  
  clone: 5 None    N37S, I64V, V77I  
  clone: 6 None    N37S, I64V, V77I  
  ptKW18
Consensus 		IDV 18 M46MI, V82VF L10LF, L24LI M36MI, N37S, I64V, V77I, I93IL N83NY 
  clone: 1 IDV 18 M46I L24I N37S, I64V, V77I, I93L  
  clone: 2 IDV 18 V82F  N37S, I64V, V77I  
  clone: 3 IDV 18 V82F  N37S, I64V, V77I  
  clone: 4 IDV 18 M46I  N37S, I64V, V77I N83Y 
  clone: 5 IDV 18 M46I, V82F L24I N37S, I64V, V77I  
  clone: 6 IDV 18 V82F L10F, L24I N37S, I64V, V77I, I93L  
  clone: 7 IDV 18 M46I  M36I, N37S, I64V, V77I, I93L N83Y 
  clone: 8 IDV 18 V82F  N37S, I64V, V77I  
  ptKW60
Consensus 		IDV 60 M46I, I54V, V82F, L90M Q58E L10I, I15IM, N37NS, L63P, I64V, K70KR, V77I, I93L F53FS 
  clone: 1 IDV 60 M46I, I54V, V82F, L90M Q58E L10I, L63P, I64V, V77I, I93L  
  clone: 2 IDV 60 M46I, I54V, V82F, L90M Q58E L10I, L63P, I64V, V77I, I93L  
  clone: 3 IDV 60 M46I, I54V, V82F, L90M Q58E L10I, L63P, I64V, V77I, I93L  
  clone: 4 IDV 60 M46I, I54V, V82F, L90M Q58E L10I, L63P, I64V, V77I, I93L F53S 
  clone: 5 IDV 60 M46I, I54V, V82F, L90M Q58E L10I, L63P, I64V, V77I, I93L  
  clone: 6 IDV 60 M46I, I54V, V82F, L90M Q58E L10I, I15M, N37S, L63P, I64V, K70R, V77I, I93L  
pt-L ptLW0
Consensus 		None    I13IV, I62V, L63H, I64IV, I72IT  
  clone: 1 None    I13V, I62V, L63H  
  clone: 2 None    I13V, I62V, L63H, I64V  
  clone: 3 None    I62V, L63H, I72T  
  clone: 4 None    I13V, I62V, L63H  
  clone: 5 None    I13V, I62V, L63H, I64V  
  clone: 6 None    I13V, I62V, L63H, I64V  
  ptLW24
Consensus 		IDV 24   I13V, I62V, L63H, I64V P9PH 
  clone: 1 IDV 24   I13V, I62V, L63H, I64V  
  clone: 2 IDV 24   I13V, I62V, L63H, I64V P9H 
  clone: 3 IDV 24   I13V, I62V, L63H, I64V  
  clone: 4 IDV 24   I13V, I62V, L63H, I64V  
  clone: 6 IDV 24   I13V, I62V, L63H, I64V  
pt-L-DW PtL None    E35D, L63P, H69Q  
pt-M ptMW60
Consensus 		IDV 60 M46L, I54V, V82A L24I L10I, I15IV, G16GR, L63P, A71V C95CY 
  clone: 1 IDV 60 M46L, I54V, V82A L24I L10I, G16R, L63P, A71V C95Y 
  clone: 2 IDV 60 M46L, I54V, V82A L24I L10I, L63P, A71V  
  clone: 3 IDV 60 M46L, I54V, V82A L24I L10I, L63P, A71V  
  clone: 4 IDV 60 M46L, I54V, V82A L24I L10I, L63P, A71V  
  clone: 5 IDV 60 M46L, I54V, V82A L24I L10I, I15V, L63P, A71V  
  clone: 6 IDV 60 M46L, I54V, V82A L24I L10I, L63P, A71V  
  clone: 8 IDV 60 M46L, I54V, V82A L24I L10I, L63P, A71V  
pt-N ptNW0
Consensus 		None  V82VA  W6WR, L10I, T12TA, D25DN, N37C, G40GR, I62V, L63X, I64IM, K70KR, Q92QH, I93L P9PS, T31TK, D60DG, L89LP 
  clone: 1 None    L10I, T12A, N37C, I62V, L63S, I64M, I93L  
  clone: 2 None    L10I, N37C, G40R, I62V, L63S, I64M, I93L L89P 
  clone: 3 None  V82A  L10I, D25N, N37C, I62V, L63T, I64M, Q92H, I93L P9S 
  clone: 5 None    L10I, N37C, I62V, L63T, I64M, I93L  
  clone: 7 None    W6R, L10I, N37C, I62V, L63S, I93L T31K, D60G 
  clone: 8 None    L10I, N37C, I62V, L63S, I64M, K70R, I93L  
  ptNW24
Consensus 		IDV 24 M46I  L10I, N37C, K45KI, I62V, L63S, V77I, I85V, I93L  
  clone: 1 IDV 24 M46I  L10I, N37C, I62V, L63S, V77I, I85V, I93L  
  clone: 2 IDV 24 M46I  L10I, N37C, I62V, L63S, V77I, I85V, I93L  
  clone: 3 IDV 24 M46I  L10I, N37C, I62V, L63S, V77I, I85V, I93L  
  clone: 4 IDV 24 M46I  L10I, N37C, I62V, L63S, V77I, I85V, I93L  
  clone: 5 IDV 24 M46I  L10I, N37C, I62V, L63S, V77I, I85V, I93L  
  clone: 6 IDV 24 M46I  L10I, N37C, K45I, I62V, L63S, V77I, I85V, I93L  
  clone: 7 IDV 24 M46I  L10I, N37C, I62V, L63S, V77I, I85V, I93L  
  clone: 8 IDV 24 M46I  L10I, N37C, I62V, L63S, V77I, I85V, I93L  
pt-O ptOW0
Consensus 		None    I93L R87RG 
  clone: 1 None    I93L  
  clone: 2 None    I93L  
  clone: 3 None    I93L  
  clone: 4 None    I93L  
  clone: 5 None    I93L R87G 
  clone: 6 None    I93L  
  ptOW48
Consensus 		IDV 48 M46I, I84V, N88T  L10I, L63P, C67CW, V77I, I93L  
  clone: 1 IDV 48 M46I, I84V, N88T  L10I, L63P, V77I, I93L  
  clone: 2 IDV 48 M46I, I84V, N88T  L10I, L63P, V77I, I93L  
  clone: 3 IDV 48 M46I, I84V, N88T  L10I, L63P, V77I, I93L  
  clone: 4 IDV 48 M46I, I84V, N88T  L10I, L63P, V77I, I93L  
  clone: 5 IDV 48 M46I, I84V, N88T  L10I, L63P, C67W, V77I, I93L  
  clone: 6 IDV 48 M46I, I84V, N88T  L10I, L63P, V77I, I93L  
  ptOW60
Consensus 		IDV 60 M46I, I84IV, N88T  L10I, L63P, I66IV, V77I, I93L  
  clone: 1 IDV 60 M46I, I84V, N88T  L10I, L63P, I66V, V77I, I93L  
  clone: 11 IDV 60 M46I, I84V, N88T  L10I, L63P, I66V, V77I, I93L  
  clone: 12 IDV 60 M46I, N88T  L10I, L63P, V77I, I93L  
  clone: 2 IDV 60 M46I, I84V, N88T  L10I, L63P, I66V, V77I, I93L  
  clone: 3 IDV 60 M46I, I84V, N88T  L10I, L63P, V77I, I93L  
  clone: 4 IDV 60 M46I, I84V, N88T  L10I, L63P, I66V, V77I, I93L  
  clone: 5 IDV 60 M46I, I84V, N88T  L10I, L63P, I66V, V77I, I93L  
  clone: 6 IDV 60 M46I, I84V, N88T  L10I, L63P, I66V, V77I, I93L  
  clone: 8 IDV 60 M46I, I84V, N88T  L10I, L63P, I66V, V77I, I93L  
  clone: 9 IDV 60 M46I, N88T  L10I, L63P, I66V, V77I, I93L  
pt-P ptPW0
Consensus 		None    L10I, V11VA, T12S, K14KR, I15IV, L33LV, M36MI, N37NS, R41RK, I64V Q58QL 
  clone: 1 None    L10I, V11A, T12S, L33V, I64V Q58L 
  clone: 2 None    L10I, T12S, I64V  
  clone: 3 None    L10I, T12S, K14R, M36I, N37S, I64V  
  clone: 4 None    L10I, T12S, I64V  
  clone: 5 None    L10I, T12S, K14R, I64V  
  clone: 6 None    L10I, T12S, L33V, I64V  
  clone: 7 None    L10I, T12S, K14R, I64V  
  clone: 8 None    L10I, T12S, I15V, R41K, I64V  
  ptPW12
Consensus 		IDV 12 V82F  L10I, T12S, I13V, I64V  
  clone: 1 IDV 12 V82F  L10I, T12S, I13V, I64V  
  clone: 10 IDV 12 V82F  L10I, T12S, I13V, I64V  
  clone: 11 IDV 12 V82F  L10I, T12S, I13V, I64V  
  clone: 3 IDV 12 V82F  L10I, T12S, I13V, I64V  
  clone: 4 IDV 12 V82F  L10I, T12S, I13V, I64V  
  ptPW48
Consensus 		IDV 48 M46I, V82F, I84V  L10I, T12S, I13V, L33LI, M36MI, I64V, E65EK, L89M Q7QL 
  clone: 1 IDV 48 M46I, V82F, I84V  L10I, T12S, I13V, L33I, M36I, I64V, L89M Q7L 
  clone: 2 IDV 48 M46I, V82F, I84V  L10I, T12S, I13V, L33I, M36I, I64V, L89M  
  clone: 3 IDV 48 M46I, V82F, I84V  L10I, T12S, I13V, L33I, M36I, I64V, E65K, L89M  
  clone: 4 IDV 48 M46I, V82F, I84V  L10I, T12S, I13V, I64V, L89M  
  clone: 5 IDV 48 M46I, V82F, I84V  L10I, T12S, I13V, L33I, M36I, I64V, L89M  
  clone: 6 IDV 48 M46I, V82F, I84V  L10I, T12S, I13V, I64V, L89M  
Pt-PB PtPB None    E35D, N37D, D60E, I64V, K70R  
pt-Q ptQW0
Consensus 		None    E35EK, M36MI, R41K, G49GE, L63S, E65EK, R87RK H69HL, G78GE 
  clone: 1 None    R41K, L63S  
  clone: 2 None    R41K, L63S  
  clone: 3 None    R41K, L63S  
  clone: 6 None    R41K, L63S  
  clone: 7 None    E35K, M36I, R41K, G49E, L63S  
  clone: 8 None    R41K, L63S, E65K, R87K H69L, G78E 
  ptQW24
Consensus 		IDV 24 I54V, V82A  R41K, I62V, L63P, V77I  
  clone: 1 IDV 24 I54V, V82A  R41K, I62V, L63P, V77I  
  clone: 2 IDV 24 I54V, V82A  R41K, I62V, L63P, V77I  
  clone: 3 IDV 24 I54V, V82A  R41K, I62V, L63P, V77I  
  clone: 4 IDV 24 I54V, V82A  R41K, I62V, L63P, V77I  
  clone: 5 IDV 24 I54V, V82A  R41K, I62V, L63P, V77I  
  clone: 8 IDV 24 I54V, V82A  R41K, I62V, L63P, V77I  
  ptQW60
Consensus 		IDV 60 M46I, I54A, V82A, L90LM  L10I, N37NS, R41K, I62V, L63P, A71V, V77I, I93IL I66IN, G68GR 
  clone: 1 IDV 60 M46I, I54A, V82A  L10I, R41K, I62V, L63P, A71V, V77I, I93L  
  clone: 2 IDV 60 M46I, I54A, V82A  L10I, R41K, I62V, L63P, A71V, V77I, I93L  
  clone: 3 IDV 60 M46I, I54A, V82A, L90M  L10I, N37S, R41K, I62V, L63P, A71V, V77I I66N 
  clone: 4 IDV 60 M46I, I54A, V82A, L90M  L10I, N37S, R41K, I62V, L63P, A71V, V77I G68R 
  clone: 5 IDV 60 M46I, I54A, V82A  L10I, R41K, I62V, L63P, A71V, V77I, I93L  
  clone: 6 IDV 60 M46I, I54A, V82A, L90M  L10I, R41K, I62V, L63P, A71V, V77I  
pt-R ptRW0
Consensus 		None    G17GR, M36I, L63P  
  clone: 1 None    M36I, L63P  
  clone: 2 None    G17R, M36I, L63P  
  clone: 3 None    M36I, L63P  
  clone: 4 None    M36I, L63P  
  clone: 5 None    M36I, L63P  
  clone: 6 None    M36I, L63P  
  ptRW24
Consensus 		IDV 24   V11VI, I13IV, I15IV, M36MT, I62IV, L63P, I64IL K20KE, K45KE, T96TI 
  clone: 1 IDV 24   I15V, L63P, I64L K45E, T96I 
  clone: 2 IDV 24   V11I, I15V, M36T, L63P, I64L K20E 
  clone: 3 IDV 24   I15V, L63P, I64L  
  clone: 4 IDV 24   I15V, L63P, I64L  
  clone: 5 IDV 24   I13V, I62V, L63P  
  clone: 6 IDV 24   I15V, L63P, I64L  
  ptRW60
Consensus 		IDV 60   V11VA, E34EK, E35EK, M36I, L63P  
  clone: 11 IDV 60   V11A, M36I, L63P  
  clone: 2 IDV 60   M36I, L63P  
  clone: 3 IDV 60   M36I, L63P  
  clone: 4 IDV 60   M36I, L63P  
  clone: 6 IDV 60   M36I, L63P  
  clone: 7 IDV 60   E34K, E35K, M36I, L63P  
  clone: 9 IDV 60   M36I, L63P  
pt-S ptSW12
Consensus 		IDV 12 V32VI, M46MI, I47IV, V82VA  I13IV, I15IV, N37ND, L63P, I64IV, T91TA, Q92QR, I93IL  
  clone: 1 IDV 12 V32I, M46I, I47V  L63P, I93L  
  clone: 2 IDV 12 V82A  N37D, L63P  
  clone: 3 IDV 12 V82A  I15V, N37D, L63P, Q92R  
  clone: 4 IDV 12 V82A  I15V, N37D, L63P, T91A, Q92R  
  clone: 5 IDV 12   I15V, N37D, L63P  
  clone: 6 IDV 12 V32I, M46I, I47V  I13V, L63P, I64V, I93L  
  clone: 7 IDV 12 V82A  I15V, N37D, L63P, Q92R  
  ptSW60
Consensus 		IDV 60 I54V, V82A L24I L10I, V11VA, I15V, E34EG, E35EK, K43KR, L63P, A71V P44PL 
  clone: 1 IDV 60 I54V, V82A L24I L10I, I15V, L63P, A71V  
  clone: 10 IDV 60 I54V, V82A L24I L10I, I15V, E35K, K43R, L63P, A71V  
  clone: 11 IDV 60 I54V, V82A L24I L10I, I15V, L63P, A71V  
  clone: 2 IDV 60 I54V, V82A L24I L10I, I15V, E34G, L63P, A71V  
  clone: 3 IDV 60 I54V, V82A L24I L10I, I15V, L63P, A71V  
  clone: 4 IDV 60 I54V, V82A L24I L10I, I15V, E35K, L63P, A71V  
  clone: 5 IDV 60 I54V, V82A L24I L10I, I15V, L63P, A71V P44L 
  clone: 6 IDV 60 I54V, V82A L24I L10I, V11A, I15V, L63P, A71V  
  clone: 7 IDV 60 I54V, V82A L24I L10I, I15V, L63P, A71V  
  clone: 8 IDV 60 I54V, V82A L24I L10I, I15V, L63P, A71V  
  clone: 9 IDV 60 I54V, V82A L24I L10I, I15V, L63P, A71V  
pt-T ptTW24
Consensus 		IDV 24 V32VI, M46MI, I47IV, L90LM G73GS K14KR, E34EG, E35ED, N37ND, L63P, V77VI, I93L  
  clone: 1 IDV 24 L90M G73S E35D, N37D, L63P, V77I, I93L  
  clone: 3 IDV 24 V32I, M46I, I47V  L63P, I93L  
  clone: 4 IDV 24 V32I, M46I, I47V  E34G, E35D, L63P, I93L  
  clone: 5 IDV 24 V32I, M46I, L90M G73S E35D, N37D, L63P, V77I, I93L  
  clone: 7 IDV 24 V32I, L90M  K14R, E35D, N37D, L63P, I93L  
  clone: 8 IDV 24 L90M G73S E35D, N37D, L63P, V77I, I93L  
pt-U ptUW52
Consensus 		IDV 52 I54V, V82F, L90M  L10I, K14R, E35D, M36V, N37D, L63P, I64V, A71T, I93L  
  clone: 1 IDV 52 I54V, V82F, L90M  L10I, K14R, E35D, M36V, N37D, L63P, I64V, A71T, I93L  
  clone: 2 IDV 52 I54V, V82F, L90M  L10I, K14R, E35D, M36V, N37D, L63P, I64V, A71T, I93L  
  clone: 3 IDV 52 I54V, V82F, L90M  L10I, K14R, E35D, M36V, N37D, L63P, I64V, A71T, I93L  
  clone: 4 IDV 52 I54V, V82F, L90M  L10I, K14R, E35D, M36V, N37D, L63P, I64V, A71T, I93L  
  clone: 5 IDV 52 I54V, V82F, L90M  L10I, K14R, E35D, M36V, N37D, L63P, I64V, A71T, I93L  
  clone: 6 IDV 52 I54V, V82F, L90M  L10I, K14R, E35D, M36V, N37D, L63P, I64V, A71T, I93L  
RJ10001 RJ10001 None    R41E  
RJ14671 RJ14671 None    T12A, I62V, L63H, I64L, I72V P44R, R57S 
RJ5114 RJ5114 None  I54T  I13V, I62V  
RJ9434 RJ9434 None    E35D, N37D, L63P  
RJ9435 RJ9435 None    E35D, N37D, L63P, A71T  
RJ9484 RJ9484 None    T12A, D29V, M36I, I62V, L63H, I64L, I72V  
RJ9487 RJ9487 None      
RJ9532 RJ9532 None    I15V, R41K, L63P, V82I  
RJ9560 RJ9560 None      
RJ9576 RJ9576 None    N37S, L63P T91P 
RJ9577 RJ9577 None    T12A, L19Q, I64V  
RJ9622 YRJ9622 None    E35D, M36I, N37S, I62V  
RJ9874 RJ9874 None    L63P  
RJ9935 RJ9935 None    N37S, R41K, I62V, L63P  
WR917 WR917 None    E21ED, I64V  
WR935 WR935 None    E35D, M36I, R41K, L63P  
WR973 WR973 None    L10I, N37A, I62V, L63H  

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