Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Yamaguchi (2003)
Title Near full-length genomes of 15 HIV type 1 group O isolates.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup O
SelectedType Clinical
NumIsolates 15
NumPts 15
Host Human

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
96CMA102 96CMA102 None   T97A D3E, K7Q, E11D, M22L, D25E, N27G, V31I, V37I, S39N, Q44H, L45I, G59E, I60V, L63M, L68A, I72V, L74I, Y83F, G106A, V110I, T112I, I113L, S119P, T124A, V126M, G134N, Q137H, S153A, K160S, G163Q, K173R, S195T, I200L, V201I, I204L, T206S, K211T, T218L, L234I, K240Q, N254K, S255G, D270H, D278A, C280S, V281VM, R284G, D288S D41P, D207Q, D286AT 
96CMABB009 96CMABB009 None    D3E, K7Q, E11D, M22L, N27G, V37I, Q44H, L45I, K46R, M50I, G59E, I60V, L63M, L74I, Y83F, G106A, T112I, S119P, T124A, T125A, V126M, A133T, K136Q, Q137H, S153A, K160S, I182V, G193R, S195T, I200L, V201I, I204L, T206S, K211T, T218S, L234I, K240Q, N254K, S255G, D278T, V281M, R284G, D288S D41P, D207Q, D286T 
96CMABB637 96CMABB637 None    D3E, K7Q, E11D, M22L, N27G, V37I, Q44H, L45I, M50I, C56Y, G59E, L63M, I72V, L74I, Y83F, G106A, V110I, K111R, T112V, I113L, S119P, T124A, V126M, G134N, K136R, Q137H, S153A, K160S, G163Q, I182V, Y194C, S195T, I200L, V201I, I203M, I204L, T206S, K211T, Q216H, T218L, N222K, R224Q, L234I, K240Q, N254K, S255G, I268L, D278A, C280S, V281M, R284G, D288S D41P, D207Q, D286T 
97CMABB447 97CMABB447 None    D3E, K7Q, E11D, M22L, N27G, V37I, Q44H, L45T, M50I, C56Y, G59E, L63M, I72V, L74I, Y83F, G106AS, V110I, T112I, I113L, S119P, T124A, V126M, G134N, Q137H, S153A, K160S, G163Q, I182V, Y194C, S195T, I200L, V201I, I203M, I204L, T206S, K211T, T218L, N222K, L234I, K240Q, N254K, S255G, I268L, D278A, C280S, V281M, R284G, D288S D41P, D207Q, D270C, D286T 
97CMABB497 97CMABB497 None    D3E, K7Q, E11D, M22L, N27G, V37I, S39N, Q44H, L45I, M50I, G59E, I60V, L63M, L68V, I72V, L74I, Y83F, G106A, T112V, S119P, T124A, V126M, A133T, G134N, K136Q, Q137H, S153A, K160S, G163Q, K173R, I182V, S195T, I200L, V201I, I204L, T206S, K211T, T218L, N222K, L234I, K240Q, N254K, S255G, I268L, D278T, C280S, V281M, R284G, D286A, D288S D41P, D207Q 
97US08692A 97US08692A None    D3E, K7Q, E11D, M22L, N27G, V37I, Q44H, L45I, M50I, G59E, I60V, L63I, L68V, I72V, L74I, Y83F, G106A, T112I, S119P, T124A, V126M, A133T, G134N, K136Q, Q137H, S153A, K160S, G163Q, K173R, I182V, S195T, V201I, I204L, T206S, K211T, T218L, L234I, K240Q, N254K, S255G, D278T, C280S, V281M, D288S D41P, D207H, D286T 
98CMA104 98CMA104 None    D3E, K7Q, E11D, N18NH, M22L, N27G, V37I, S39N, Q44H, L45I, M50I, G59E, I60V, L63M, L68T, I72V, L74I, Y83F, G106A, T112V, S119P, T124A, V126M, G134N, Q137H, S153A, K160S, G163E, K173R, S195T, I200L, V201I, I204L, T206S, K211T, T218L, L234I, K240Q, N254K, S255G, D270H, D278A, C280S, V281M, R284G, D288S D41P, K136K*, D207Q, D286T 
98CMA105 98CMA105 None    D3E, K7Q, E11D, M22L, D25E, N27G, V37I, Q44H, L45I, G59E, I60V, L63M, L74I, Y83F, G106A, T112I, I113L, S119P, T124A, V126M, G134N, K136Q, Q137H, S153A, K160S, K173R, I182V, F185Y, S195T, V201I, I204L, I208L, K211T, T218L, L234I, K240Q, N254K, S255G, D278T, C280S, V281M, R284G, D288S D41P, D207Q, D286T 
98CMABB141 98CMABB141 None    D3E, K7Q, E11D, M22L, N27G, V37I, Q44H, L45I, K46R, G59E, I60V, L63I, L68V, I72V, L74I, Y83F, G106A, T112V, S119P, T124A, V126M, A133T, G134N, K136Q, Q137H, S153A, K160S, G163Q, I182V, S195T, V201I, I204L, T206S, K211T, T218S, L234I, K240Q, N254Q, S255G, D278T, C280S, V281M, D288S D41P, D207H, D286T 
98CMABB197 98CMABB197 None    D3E, K7Q, E11D, M22L, D25E, N27G, V37I, Q44H, L45I, K46R, M50I, G59E, I60V, L63M, L74I, Y83F, Y99H, G106A, T112V, I113L, S119P, T124A, V126M, A133T, G134N, Q137H, S153A, K160S, G163Q, K173R, I182V, S195T, V201I, I204L, T206S, K211T, T218L, L234I, K240Q, N254K, S255G, D278AT, C280S, V281M, R284G, D288G D41P, D207H, D286T 
98CMABB212 98CMABB212 None    D3E, K7Q, E11D, M22L, N27G, V37I, Q44H, L45I, M50T, G59E, L63M, L74I, Y83F, T93S, G106A, T112V, S119P, T124A, T125A, V126M, A133T, K136Q, Q137H, E157N, K160S, G163Q, I182V, S195T, I200L, V201I, I204L, T206S, K211T, T218L, L234I, K240Q, N254K, S255G, D278N, C280S, V281M, D288S D41P, D207Q, D286T 
98CMU2901 98CMU2901 None    D3E, K7Q, E11D, R20K, M22L, N27G, V37I, Q44H, L45I, G59E, I60V, L63I, I72V, L74I, Y83F, G106A, T112I, S119P, T124A, V126M, A133T, G134N, K136Q, Q137H, S153A, K160S, G163Q, K173R, I182V, S195T, V201I, I204L, T206S, K211T, N222K, R224Q, L234I, K240Q, N254K, S255G, D256E, D270H, D278A, C280S, V281M, R284RG, D288S D41P, D207Q, T218F, D286T 
98CMU5337 98CMU5337 None    D3E, K7Q, E11D, M22L, N27G, V37I, S39N, Q44H, L45I, M50T, C56Y, G59E, I60V, L63I, L74I, Y83F, T93S, G106A, T112I, S119P, T124A, T125I, V126M, A133T, G134N, Q137H, S153A, K160S, G163Q, K173R, I182V, I191L, S195T, V201I, I204L, T206S, K211T, N222K, R224Q, L234I, K240Q, N254K, S255G, D270H, K273KQ, C280S, V281M, R284G, D288S D41P, D207Q, T218F, D278P, D286T 
99CMU4122 99CMU4122 None    D3E, K7Q, E11D, M22L, N27G, V37I, S39N, Q44H, L45I, M50I, G59E, I60V, L63I, L68T, I72V, L74I, Y83F, G106A, T112V, S119P, T124A, V126M, A133T, G134N, Q137H, S153A, K160S, G163Q, K173R, I182V, S195T, V201I, I204L, T206S, K211T, N222K, R224Q, L234T, K240Q, N254K, S255G, D270N, D278T, C280S, V281M, R284G, D288S D41P, D207Q, T218F, D286AT 
99USTWLA 99USTWLA None  G118R, G140GR  D3E, K7Q, E11D, M22L, N27G, V37I, Q44H, L45I, K46R, G47E, A49P, G59E, L63M, L74I, Y83F, G106A, T112I, S119P, T124A, V126M, A133T, K136Q, Q137H, S153A, K160S, G163Q, I182V, S195T, I200L, V201I, I204L, T206S, K211T, T218L, L234I, K240Q, N254K, S255G, D256E, D278T, V281M, R284G, D288S W19W*, D41P, G52GS, G149GE, D207Q, D286T