Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Eshleman (2004)
Title Performance of the Celera Diagnostics ViroSeq HIV-1 genotyping system for sequence-based analysis of diverse human immunodeficiency virus type 1 strains.
Citation J Clin Microbiol
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 124
NumPts 124
Subtype CRF02_AG, B, C, CRF01_AE, A, D, F, G, CRF12_BF, CRF35_AD, CRF45_cpx, H, CRF18_cpx

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 124 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
122_335 122_335 None    I13V, K14KR, L19I, E35D, M36I, R41K, K45R, R57K, L63LI, I64IM, H69K, L89M  
128_318 128_318 None    I13V, M36I, R41K, I64V  
140_223 140_223 None    I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M  
151_940 151_940 None    T12K, I13V, I15V, L19I, R41K, V77I  
161_287 161_287 None    I13V, K20KR, E35D, M36I, R41K, R57RK, H69K, L89M  
194_793 194_793 None    I13V, K14KR, E35D, M36I, R41K, R57K, L63I, H69K, L89M  
205_586 205_586 None    L10LV, M36MI, R41K, L63LHQ, I64IV, E65ED  
225_692 225_692 None    V11I, I13V, G16E, K20R, E35D, M36I, R41K, L63V, G68E, H69K, K70R, L89M, T91V, I93L  
225_706 225_706 None    I13V, E35D, M36I, R41K, R57K, H69K, L89M  
264_615 264_615 None    I13V, K14R, E35D, M36I, R41K, K45R, R57K, H69K, L89M  
264_643 264_643 None    I13V, E35D, M36I, R41K, R57K, D60E, L63P, H69K, L89M  
326_570 326_570 None    L33LV, R41K, H69Y  
99_237 99_237 None    I13V, K20R, M36I, R41K, I62IV, I64V  
AB511 AB511 None    I13V, K14KR, K20R, E35DN, M36I, N37D, R41K, H69K, L89M  
ABB01 ABB01 None    V11I, T12X, I13V, K14R, G16E, K20I, L33V, E35G, M36I, R41K, K43Q, H69K, K70R, I72V, L89M  
ABB02 ABB02 None    G16A, M36T, L38I, R41K, I62V, L63H, H69Q  
ABB03 ABB03 None    I13V, K14R, K20I, M36I, R41K, C67G, H69K, V82I, L89M  
ABB05 ABB05 None    L10LV, V11I, I13V, K14R, K20I, E34A, M36I, R41K, H69K, L89M  
ABB06 ABB06 None    T12TA, I13V, K20I, E34A, M36I, N37S, R41K, H69K, L89M  
ABB07 ABB07 None    I13V, K14R, G16E, K20I, M36I, R41K, H69K, L89M  
ABB08 ABB08 None    I13V, E35D, M36I, R41K, H69K, L89M  
ABB10 ABB10 None    I13V, K14R, K20I, M36I, R41K, I64M, H69K, L89M  
ABB101 ABB101 None    I13V, K14R, L19P, K20I, M36I, R41K, H69K, L89M  
ABB102 ABB102 None    I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M  
ABB105 ABB105 None    L10I, V11T, I13V, K20I, E35D, M36I, R41K, L63P, H69K, K70KR, L89M  
ABB11 ABB11 None    L10V, I13V, K20I, E34A, M36I, N37S, R41K, H69K, V77I, L89M  
ABB110 ABB110 None    I13V, K14R, K20I, M36I, R41K, H69K, L89M  
ABB117 ABB117 None   L89V I13V, K14R, K20I, E35D, M36L, R41K, I66V, H69K, V77I  
ABB119 ABB119 None    I13V, K20I, M36I, R41K, H69K, L89M  
ABB124 ABB124 None    I13V, K14R, K20I, E35D, M36I, R41K, H69K, V82I, L89M  
ABB125 ABB125 None    I13V, K14R, K20I, E35D, M36I, R41K, H69K, V82I, L89M  
ABB13 ABB13 None    I13V, K14R, K20I, M36I, R41K, H69K, L89M  
ABB142 ABB142 None    I13V, K14R, G16E, L19LI, K20I, E35K, M36I, R41K, H69K, L89M  
ABB144 ABB144 None    I13V, K14KR, I15IV, G16E, L19Q, K20I, E35D, M36I, R41K, I62V, L63FS, I64M, H69K, L89M  
ABB145 ABB145 None    I13V, E35N, M36I, N37D, R41K, H69K, L89M  
ABB163 ABB163 None    I13V, K14R, K20I, E35D, M36I, R41K, I64M, H69K, V77I, L89M  
ABB164 ABB164 None    I13V, I15V, E35D, M36I, R41K, H69K, L89M  
ABB165 ABB165 None    L10LIV, I13V, I15IV, K20KR, E35D, M36I, N37D, R41K, E65D, H69K, L89M  
ABB177 ABB177 None    I13V, I15L, G16E, K20I, M36I, I64M, H69K, K70KR, L89M  
ABB180 ABB180 None    I13V, K14R, K20I, M36I, R41K, H69K, L89M  
ABB198 ABB198 None    I13V, K20I, M36I, N37S, R41K, L63P, H69K, V82I, L89M  
ABB20 ABB20 None    I13V, K20I, E35D, M36I, R41K, H69K, L89M  
ABB201 ABB201 None    I13V, G16E, K20R, M36I, R41K, D60E, I62V, L63N, I64M, H69K, K70R, V77VI, L89I  
ABB207 ABB207 None    I13V, K14R, K20R, E35G, M36I, N37D, R41K, H69K, L89I  
ABB208 ABB208 None    E35D, M36I, R41K, I62V, L63P, H69Q  
ABB21 ABB21 None    E35D, M36I, N37ND, R41RK, L63LP  
ABB213 ABB213 None    L10V, I13V, K14R, L19I, E35D, M36I, R41K, H69K, V77I, L89M  
ABB22 ABB22 None    I13V, K14R, G16E, G17E, K20I, M36I, N37K, R41K, H69K, L89M  
ABB26 ABB26 None    I13V, K14R, L19P, K20I, E35X, M36I, N37D, R41K, L63LP, H69K, L89M  
ABB27 ABB27 None    I13V, K20R, E35D, M36I, N37D, R41K, K45R, L63P, I64M, H69K, I72V, V77I, L89M  
ABB28 ABB28 None    I13V, K14R, G16GE, K20I, M36I, R41K, I64IV, H69K, L89M  
ABB29 ABB29 None    I13V, K20I, E34G, M36I, N37H, R41RK, L63P, I64M, H69K, K70E, L89M  
ABB30 ABB30 None    I13V, K14R, K20I, E35Q, M36I, R41K, R57K, C67E, H69K, V82I, L89M  
ABB33 ABB33 None    I15V, K20R, E35D, M36I, P39S, R41K, K45R, I62V, L63P, H69Q, I72T, L89M  
ABB45 ABB45 None    I13V, K20I, E35D, M36I, R41K, H69K, V82I, L89M  
ABB46 ABB46 None    I13V, K14R, L19P, K20I, E35D, M36I, R41K, H69K, L89M  
ABB51 ABB51 None    I15V, K20R, E35D, M36I, P39S, R41K, I62IV, L63P, H69HQ, L89M  
ABB52 ABB52 None    I13V, K14R, K20I, M36I, R41K, I62V, H69K, K70R, T74S, L89M  
ABB53 ABB53 None    I13V, K14R, K20I, E35D, M36I, N37D, R41K, L63P, G68E, H69R, I72IV, L89M  
ABB55 ABB55 None    L10I, I13V, K14R, K20I, E35D, M36I, R41K, L63P, C67E, H69K, V82I, L89M, I93V  
ABB61 ABB61 None    I13V, K14R, K20I, M36I, R41K, H69K, V82I, L89M  
ABB63 ABB63 None    V11VI, I13V, K14R, K20I, M36I, N37S, R41K, L63ST, H69K, L89M  
ABB66 ABB66 None    L10V, I15V, E35D, M36I, P39S, R41K, I62V, L63S, H69Q, L89M  
ABB70 ABB70 None    I13V, K14R, K20I, M36I, N37D, R41K, H69K, L89M  
ABB74 ABB74 None    I13V, K20I, M36I, N37X, P39PQ, R41K, H69K, L89M  
ABB78 ABB78 None    I13V, K14R, G16E, K20I, E35D, M36I, R41K, H69K, L89M  
ABB81 ABB81 None    I13V, K14R, K20I, E34Q, M36I, P39S, R41K, H69K, L89M  
ABB89 ABB89 None    I13V, K14R, K20I, M36I, R41K, I64L, H69K, L89M  
ABB91 ABB91 None    I13V, K14R, K20I, E35D, M36I, R41K, H69K, L89M  
ABB94 ABB94 None    I13V, K20I, E34A, M36I, N37S, R41K, H69K, L89M  
ABB95 ABB95 None    K14N, I15V, E35D, M36I, R41K, Q61N, E65D, I72V, L89M  
ABB98 ABB98 None    I13V, K14R, K20I, M36I, R41K, H69K, L89M  
ABB99 ABB99 None    I13V, K14R, K20I, M36I, R41K, H69R, K70E, I72T, L89M  
ARG1649 ARG1649 None    I15V, M36I, R41K, R57K, Q61N, I93L  
ARG2795 ARG2795 None    I15V, E35D, M36I, R41K, R57K, Q61D  
ARG2982 ARG2982 None    K20R, E35D, M36I, R41K, R57K, Q61N, I72T  
BrRJ002 BrRJ002 None    I15V, M36I, N37T, H69K  
BrRJ004 BrRJ004 None    T12Q, L19I, V77VI  
BrRJ007 BrRJ007 None    M36IL, I64V, E65ED  
BrRJ009 BrRJ009 None    L19V, L63X, I64IM, E65ED, I93IL  
BrRJ011 BrRJ011 None    L10I, H69Q  
BrRJ026 BrRJ026 None    T12S, I15V, L19I, E35ED, M36X, I72V  
BrRJ034 BrRJ034 None    I13IV, K14KR, E35D, M36I, P39S, R41K, R57K, Q61N, L89M  
BrRJ035 BrRJ035 None    I13V, K14R, I15V, E35D, M36I, R41K, R57K, Q61N, E65D, I72T, L89M  
BrRJ036 BrRJ036 None    I15V, E35D, M36I, R41K, R57K, Q61N, L89M, I93L  
BrRJ041 BrRJ041 None    N37S, V77I  
BrRJ042 BrRJ042 None    I15V, G17E, K20R, E35D, M36I, R57K, Q61N, E65D, L89M  
BrRJ070 BrRJ070 None    G17E, I62V, L63P, H69Y, A71T  
BrRJ092 BrRJ092 None    M36I, R41K  
BrRJ126 BrRJ126 None    I15IV, E35D, M36I, R41K, K43R, R57K, Q61S, H69Y, L89M  
BrRJ127 BrRJ127 None    L10V, I15V, E35D, M36I, R41K  
Thai201 Thai201 None    I15IV, E35D, M36I, R41K, H69K, L89M  
Thai203 Thai203 None    I13V, E35D, M36I, R41K, H69K, L89M  
Thai204 Thai204 None    I13V, E35D, M36I, R41K, L63P, H69K, L89M  
Thai205 Thai205 None    I13V, I15IV, K20R, E35D, M36I, R41K, H69K, L89M  
Thai207 Thai207 None    I13V, E35D, M36I, R41K, K43R, H69K, L89M  
Thai208 Thai208 None  M46L  K20KR, E35D, M36I, R41K, H69K, L89M  
Thai209 Thai209 None    I13V, E35ED, M36I, R41K, L63P, H69K, L89M  
Thai210 Thai210 None    L19M, E35D, M36I, R41K, H69K, L89M  
Thai211 Thai211 None    I13V, E35D, M36I, R41K, R57K, H69K, L89M