Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

PI Mutation Pattern & Susceptibility

1136 patterns of major drug resistance mutations (defined here) from 93213 clinical isolates obtained from 87121 persons infected with HIV-1 Group M virus are arranged in decreasing prevalence in the table (updated on 2014-5-10). Sequences containing a mixture at one of the major drug resistance positions were excluded from the table. For each pattern, drug susceptibility data on isolates matching the specific mutation pattern is shown on the left side. The analysis was originally published in Rhee et al. 2004. The data was described in Rhee et al. 2010.

The number of sequences with each pattern is indicated, as well as the median fold resistance, as assayed by the ViroLogic PhenoSense assay, to each of several individual members of the selected drug class. Subscripts indicate the number of sequences assayed for resistance to the designated drug. Interquartile ranges are available by clicking here. Data on the 30 most common mutation patterns is also available in a PDF format.

Mutation PatternsNumber of
Sequences
NFV
foldn
SQV
foldn
IDV
foldn
FPV
foldn
ATV
foldn
LPV
foldn
TPV
foldn
DRV
foldn
None655351.17520.77310.87440.77080.94640.75930.93830.7365
90M17767.3503.2513.1511.3473.1331.6421.2240.919
30N128540461.3441.3450.8392.5301.0271.2121.08
46I,90M56622364.2369.1343.2294.9172.7230.9130.86
54V,82A,90M5185726272624263.62436739242.441.61
54V,82A4229.4211.4218.0201.5192.31011171.660.83
46I,84V,90M3754833433128327.732221917272.0114.04
84V,90M3721924252411254.52415126.4232.092.16
46L,54V,82A37139206.22019194.61731937171.1101.74
46I3521150.954.452.142.232.731.120.82
46I,54V,84V,90M350862116118532120211711296204.712119
46L,54V,82A,90M3344017111722168.21717750154.444.13
46I,54V,82A30617251.82513233.0216.6930191.260.83
46L3008.221.522.621.122.411.62  
82A2722.590.992.181.081.972.280.43 
46I,54V,82A,90M2624922222229226.422241658222.6141.88
54V,84V,90M153144677365061361552433172132
88S1478.3161.2162.5160.1157.241.140.610.31
54V,90M1333436035.031.337212822312.11
30N,90M12574156.0152.8151.3154.851.850.510.41
46L,90M1051573.477.571.775.432.850.620.72
46I,88S991881.385.880.276.110.82  
46L,82A986.131.337.435.832.527.03  
30N,46I932550.651.250.851.530.840.420.51
46I,54V,76V,82A931181.683736.581.488280.51 
82A,90M886.121.627.121.625.512.72  
84V862.5102.8101.993.992.342.693.232.62
54V851828.126.223.028.625.422.710.61
46I,84V847.526.223.326.327.828.626.022.01
48V,54V,82A8129615262362.562763361.030.82
54L,84V,90M7850619762053063251661.52192
32I,46I,82A,90M692564.562151262061561.53462
46L,54V,84V,90M67897257769632757710375.557.52
32I,46I,47V,54M,82A,90M6513822721442300271235029.823462
46I,47V,54V,84V,90M642372 1481542184217028.72131
46I,54V,82F,90M6311086.589282586748784.34113
46L,54V,82A,84V621797991281391683591252.11
48V,54V,82A,90M6235102541028101.81027532100.550.43
48V,54T,82A6192575048757.257855451.031.21
46I,50V,54V,82A,90M58154225160237145125211.42151
54V,82A,84V,90M58474974234104591524 3.71
46L,54V,82A,84V,90M58429419339159725888184122
46I,54V,84V565876474271976339071.31151
46I,82A546712214117.81431451  
46I,76V543.010.611314.41    
46I,54V,82A,84V,90M52942611532552961187210.01 
46I,54V,82A,84V522525921221623629927.71 
32I,46I,47V,54L,84V,90M506558752854005283540055.155003
32I,46I,47V,54M,90M49        
46I,54V,76V,82A,90M492924.026.811422.811492  
54V,82F,90M463438.845121341135448.126.32
32I,46I,82A451130.8310.034.833.525.02  
54L,90M449.233.931.934021322.232.123.41
54V,82T,90M442747.441642.141821344.611.31
32I,46I,54V,82A,90M44        
54V,82T422784.882481.061513.43  
32I,46I,47V,54V,82A,90M404461263552361559462.555.63
54V,82A,84V401353058.151351234358.525.81
46I,54V,82T,84V,90M408651384823155114411451182 
46I,54V,82T,90M3912344246849.9377212649.621.11
46L,84V,90M3919519510.048.051047.043.442.84
46I,54L,84V,90M39433100032533834733731.73143
46L,82A,90M399.634.231134.031821531821.21
30N,46L39        
48V,54V,82A,84V3918458341246.047028022.022.51
46I,54V,82T,84V38894604416341432113874242 
46I,54M,84V,90M37594564244474821702  
32I,46I,47V,82A361321.322221324815521.125.11
30N,54V,90M3620054658.452.351311414.511.41
46I,54V,82S346013315114.215219110.91 
32I,46L,82A344.530.734.331.63 5.21  
50L340.3150.380.3150.3156.0190.35  
32I,46I,47V,82A,90M3472133189183170015001151441
54L332.511.611.811411.714.611.713.61
50V323.041.641.241441.426.74  
82F324.130.332.523.41    
46I,54V,82T327.911.911814.011716410.811.11
46I,47V,54V,82A,90M31        
32I,46I,47V,90M316.211.114.413.51    
46I,54V,76V,84V,90M30        
46L,48V,54V,82A30991100019019.01161112610.511.41
32I,46I,47V,54M,84V,90M304561762562005736176610443734
54V,82F305723.423521621027126.61 
54V,84V296212671341761120110915.11 
46I,82T291341.841342.846.531631.831.81
46I,54V,90M29200329031142313294220631325.61
46L,54V,76V,82A281732.533531532.0212030.61 
46I,50V,54V,82A27        
54L,82A,90M262531739.731532731734.52 
47V26        
46I,50V263.331.431.422130.91153  
46I,82T,84V263.982.587.273.181938.762.521.62
46I,47V,54M,84V,90M2440262143240016828721062312
32I,46I,47V,54L,82A,90M244448.24264134438221842.71 
48V,90M245.321925.022.02 1.21  
46I,54V,76V,84V24        
46I,82T,90M242942142443.143921641.410.91
46I,76V,84V,90M23122542422160219216221.111091
46L,54L,82A,90M231313.917.916.0110.011110.71 
46L,48V,54V,82A,84V23643271334324394310733.13 
46I,76V,84V225.822.82212192 332  
82T22        
46I,82A,84V224.413.413.816.313.117.911.311.31
76V22        
48V,54V,82S21        
46I,82A,90M212034.032537.031121432.115.01
54M,90M21        
54V,82S211514.011710.911711911.11 
32I,46I,47V218.011.011616.619.018.711.612.51
46L,48V,54V,82A,90M21441 4016.91 391  
88S,90M219733431730.73671102  
54V,82T,84V212137333036.732422632621.71
46I,76V,90M217.252.951747.242.622320.821.51
48V,54S,82A211193100031543153128211731.533.93
54V,82T,84V,90M207229116121121871981  
32I,46I,47V,54M,82A202541.84284101412422145.33811
48V,54T,82A,90M201651  7.61 15111.31 
46I,88S,90M196726.721620.721612.321.021.02
46L,48V,54T,82A191393467217138.73 663  
82L190.950.750.651.051.250.651.451.15
46I,82F,90M195021.82372132122372  
48V,82A197.536.536.632.93    
48V18        
46I,54V,82F181910.11 1.71 5.81  
32I,47V183.911.511.712.516.314.011.511.31
32I187.712.213.312.014.011.812.311.41
32I,46I,47V,54L,90M187417011118918917111.21481
48V,82A,90M1825110512212.11 7.81  
46L,54V,84V18426262923472612504211321252251
46I,54L,76V,84V,90M17        
46L,54V,76V,82A,90M176.813.812215.610.713310.912.51
82A,84V171313116.81431 291  
48V,54V,82S,90M17        
54A,82A,90M17136366314339.33242110832.71 
46I,54M,76V,84V,90M17        
32I,47V,54M,90M1763252234215227621302102 
46I,54V,82F,84V,90M17        
46I,82T,84V,90M172333833333.42 162  
54V,76V,82A1710.052.252946.252.959151.321.61
82T,90M17        
54L,84V168.222722.622821429.421.62 
54M,84V,90M16        
46L,48V,54S,82A169912931117114157110511.41 
46L,54A,82A16        
30N,54L,90M1515662264.561163641430.82161
30N,46I,90M1512111516.012.516.612.41  
46L,84V155.721325.422.825.612.821.31 
48V,54V,90M15        
54A,82A15184113511061191133113615.11 
46L,54V,82T156826224421226327226.31 
46I,48V,54T,82A15106221728026.723416910.41 
48V,54A,82A14        
46I,47V,54V,84V14234604164414392804172 
32I,46I14        
54M144.711.912.011213.412.91  
32I,47V,54L,84V,90M14        
46I,50V,90M141912119.115612.51391  
46I,50V,54V,90M14931100015.013114719410.51301
46L,54L,82A,84V,90M13        
82A,84V,90M13        
48M,54V,82A,90M1337226752290261214112502  
32I,47V,54M,84V,90M13        
46I,47V,54V,82A131614.8110.018.716.816112.91 
46I,47V,54M,76V,84V,90M13        
46I,54V,76V,82T133138.2350031737.7350031.433.63
32I,46L,82A,90M132214.911614.511416.41  
46L,54L,84V,90M13591100110.01881 281  
30N,84V,90M13600470041942949842943.117.21
46I,54A,82A,90M1289159115015.61651751  
48V,54V,82A,84V,90M121131100011021301 1221  
32I,46I,90M12        
30N,54V12        
46I,82F127.410.212.312.21 4.51  
46I,54L,82A,90M12250150110911191311129212.81 
54T12        
46L,88S121251.252.950.15    
46L,54L,82A121122.427.221221411522.11 
46L,54M,84V,90M12553663223148339527031123142
48M,54V,82A12        
48V,50V,54A,82A11        
46I,54A,82A11        
46I,54M,90M11241151131581 171  
32I,47V,54M,82A,90M11        
32I,46I,47V,54V,82A11        
84C116763762.767.465.032.24  
46L,82A,84V11        
32I,90M1110.032.833.133.135.131.231.131.13
46I,54L,90M111421.423.821225.223320.423.82
46I,54V,76V,90M111.610.618.712.91 4610.81 
46I,54V,76V,82F,90M116622.3233522422.5225521.12 
46I,48V,54S,82A10231100011151111110113912.612.01
30N,54L10        
46L,54M,82A,90M106123126126527429823.023.51
50V,54V,82A10191337119143112110610.31 
46I,47V,54L,84V,90M10        
46L,48V,54V,82S10        
54L,82A,84V,90M1060115812419011801801171221
46L,54V,82F10        
48V,54S,82A,90M10        
46I,82A,84V,90M1038199120126112214816.01 
48V,50V,54V,82A10        
46L,54V,90M10        
32I,82A10        
32I,46I,47V,84V,90M10        
82L,90M102.611.211.41  1.21  
30N,46I,54V,82A10600123146134144150012.217.81
32I,54L,84V,90M10673333183300326035435.531922
32I,47A10        
54V,82C,90M9        
46L,54V,82F,90M9        
46I,54V,82C,90M9        
46I,54M,82A,90M9        
82F,90M92211.311515.716.111211.71 
46I,47V,76V,84V9        
30N,54V,82A,90M9600112614916.6110015211.71 
46I,84A960066286656326523145  
46I,47V,54V,82F,90M9        
46I,54V,82S,90M9        
46I,76V,82F,90M9        
54V,82M,90M9        
48V,50V,54S,82A92021293122411121112132410.91 
46I,54V,82C,84V,90M9        
46L,48V,54V,82A,84V,90M9362 172202 822  
46I,54V,76V9        
46I,54M,84V91911518.219912112912.21271
46I,47V,54V,76V,82A9        
46L,54V,82T,84V925137152119153159120015.61
30N,54L,84V,90M9217110417.4140015012811.01511
46L,82A,84V,90M9202432152182492312141151
50V,54V,90M9        
46L,82T9        
46I,48V,50V,54S,82A91134100034003904100450031.62391
54M,82A,90M8        
30N,54V,84V,90M8        
46I,48V,90M8        
46I,54V,76V,82F81610.914619.511.011121  
46I,48V,50V,54T,82A8531100011601130149150011.71541
32I,46I,47V,54L,84V81.711.213.61132117150013.011261
32I,46L,54V,82A,90M8198221121192402191210224.92 
46I,76V,82A83.810.411814.311.21231  
32I,46I,47A84920.822624528.8116523.129.31
46L,54V,82C,84V,90M8        
30N,84V815224028.226.72352111  
30N,82A74512.311.811.212.511.21  
46L,48A,54V,82A7        
32I,46I,47V,54L,82A7        
46L,48V,54T,82A,90M76001100015001361700126313.6110.01
46I,54L,84V79.714.912.517.512.112.511.41 
46L,54V,82S7        
46L,54V,82C,90M71781 581171 931  
32I,47V,54L,90M7321151191431 671  
30N,46I,84V,90M7        
46I,47V,54V,90M7        
32I,46I,47A,90M7        
46L,54L73.612.412.915.113.015.010.812.41
54V,82C,84V,90M7        
46L,48V,82A,90M7        
46I,54L,76V,84V73.211.417.113012.318010.51 
32I,47A,90M7        
48V,54V7        
46L,54L,82A,84V7        
32I,46I,47V,84V73126.02172412402772161251
32I,46I,84V,90M720032003553200220021083112 
46I,50V,54V,82T,90M7        
46I,50V,76V71.350.951.016.051.0510.050.811.01
32I,46L,54V,82A7        
48A,54V,82A,90M6        
50V,54V,82A,90M6        
82S61511.611811311313818.91 
32I,46I,54V,82A6        
48A,54V,82A6        
32I,46L,54L,84V,90M6773633213200310939137.432003
46I,54L6        
46I,47A,84V,90M69212517311291371500110.01351
50L,82A60.710.310.810.711210.710.410.21
46L,48A,54V,82A,90M6        
46I,54V6        
46I,50V,82A,90M6        
54L,82A,84V6        
46L,54A,82A,90M6        
30N,46I,82A6        
32I,46I,47V,54L,82A,84V,90M6        
32I,54V,82A,90M612412619.317.714212115.813.11
54V,82M6        
48V,82A,84V6        
48V,54A,82A,90M6214128012091251336126011.31 
46L,54V,82T,90M642154147110.01321871121 
54A,82F6        
46L,54L,84V6        
46L,76V61.110.814.419.610.619.810.41 
54V,82S,90M63239.431632.831115134.11 
30N,50V6        
32I,54V,84V,90M653252323924002108228329.821302
32I,46I,47V,54M,82T,90M5163153573114370328732003753
46I,54V,76V,82A,84V56.512.81 3415.81831  
46L,48V,82A5        
32I,46I,47V,82T,90M51141591400144118711391  
32I,47V,82A52.110.213.312.11 2.710.410.51
46L,50V5        
54M,82A,84V,90M5        
50V,90M51018.412.911312.01121  
54V,76V,82A,90M5        
46I,82F,84V52041791541 17212561  
46I,47V,54L,82A,90M5        
46L,48V,54S,82A,90M5        
46I,54V,84A539821000214823724772632  
46I,84V,88S56611211210.31311   
32I,47V,90M578151167140011571500180012001
30N,54V,82A533522322622622627323.323.52
46L,54L,90M52211514.412511318.011.31121
46I,47V,54M,90M5        
46I,82F,84V,90M5        
30N,46I,54V,90M5        
46I,47V,54V,82S5        
46I,54A,82F,90M5        
32I,46I,47A,82A52820.6250255219250026.32132
32I,82A,90M52314.911411519.311611.01 
48M,50V,54V,82A,90M5        
30N,46I,54L,90M555014516.81281    
46I,47A,84V5        
54M,82A57.731.935.032234.031131.111.21
46L,48S,54V,82A587220921723.12 1022  
48V,50V,54T,82A511512711121197182128610.91 
30N,46L,54V,90M560018711411.813417.91  
46I,47V,84V,90M5        
46I,47V,54V,82C,90M567140019.414015811161291 
46I,48V,82A,84V,90M5        
46I,50V,54A,82A,90M4        
32I,46I,54L,84V,90M4432502222142225828623.522042
46I,54M,76V,82A,90M4        
46I,47V,54V,82T,90M4        
46L,48A,54V,82A,84V,90M4        
47V,54V,82A,90M4        
48V,54V,82C,90M4        
32I,46I,47V,50V,82A4        
54A,84V,90M4        
46L,48V,54V,82S,84V4        
32I,46L,47V,82A42514.812911212316113.71 
46I,47V,54M,84V4        
46L,48V,54M,82A,84V4        
32I,54L,84V48.012.313.915711711514.61351
46I,50V,54V,76V,82A4        
32I,46I,84V4        
48V,84V,90M4        
48A4        
46L,54L,82T,90M412110.01161131141111  
54V,82F,84V,90M4        
46L,54M,82A,84V4        
46L,54V,82S,90M4        
32I,47A,82A4        
46L,54V,82C,84V4        
46I,50L4        
32I,46L4        
54M,82M,90M41312.018.612111315.913.01 
32I,46I,47V,54M,84V4261141191126156113014.31 
32I,54V,90M46925923121429621512.018.01
46I,54M,76V,90M4        
46I,47V,54L,76V,84V,90M4        
32I,47V,54M,82T,90M4        
48V,82C,90M4        
46I,48V,54T,82S4        
46L,50V,54V,82A,90M4        
30N,46L,54L,90M4        
46I,54V,76V,82T,84V4        
32I,46I,54L,82A,90M4128140012313411121721931 
30N,46I,54V450011416.114.21    
54V,88S4        
54A,82F,90M4        
46I,50V,82A4        
46I,48V,54T,82A,90M41181267116016.9110514911.01 
46I,76V,82F46.510.512112710.61541  
46L,54M,90M43213.718.319.91    
46L,54V4        
46I,54L,82T,90M4        
46L,82T,90M4        
46I,54T,82A4        
32I,46I,54V,90M4        
46L,54V,76V,82F,90M4        
46I,47V,54V,82F4        
46I,54V,76V,82S4        
47V,54V,82A4        
32I,46I,54M,82A,90M44713.512115716913314.41 
32I,46I,54M,82A42911.81201311    
32I,46I,47V,50V,54L4        
46I,54A,84V,90M4        
46L,48V,54V,82T4        
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32I,54L,82A,84V,90M3        
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46I,50V,76V,82A,90M2        
32I,46I,54V,82A,84V,90M2        
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32I,47V,54M2        
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46I,48M,54S,82A,90M2        
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46I,82L22.111.511.016.011.713.211.012.01
46I,54A,82T,84V,90M2        
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32I,46I,47V,50L,82A2        
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32I,46L,47A,90M2        
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47V,48M,54M,82A,84V,90M2        
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32I,46I,47V,54M,82A,84V2        
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32I,46I,47V,50V,54V,82A,90M2        
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48V,54V,82T,90M2        
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32I,46I,47V,50L,82T,90M28.311.311312.2116118.014.510.71
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46I,48V,82A,90M2        
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46I,54V,82L,84V,90M2        
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47A2        
46L,48V,54T,82T2        
76V,82A2        
48V,54V,82C,84V2        
46I,47V,54A2        
76V,90M2