Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

PI Mutation Pattern & Susceptibility

1058 patterns of major drug resistance mutations (defined here) from 70835 clinical isolates obtained from 65217 persons infected with HIV-1 Group M virus are arranged in decreasing prevalence in the table (updated on 2013-1-18). Sequences containing a mixture at one of the major drug resistance positions were excluded from the table. For each pattern, drug susceptibility data on isolates matching the specific mutation pattern is shown on the left side. The analysis was originally published in Rhee et al. 2004. The data was described in Rhee et al. 2010.

The number of sequences with each pattern is indicated, as well as the median fold resistance, as assayed by the ViroLogic PhenoSense assay, to each of several individual members of the selected drug class. Subscripts indicate the number of sequences assayed for resistance to the designated drug. Interquartile ranges are available by clicking here. Data on the 30 most common mutation patterns is also available in a PDF format.

Mutation PatternsNumber of
Sequences		NFV
foldn		SQV
foldn		IDV
foldn		FPV
foldn		ATV
foldn		LPV
foldn		TPV
foldn		DRV
foldn
None569171.05090.75030.85020.74910.92580.73580.91970.7181
90M15488.5353.4363.1361.4343.4221.8271.0150.810
30N114639351.1341.2340.8352.4261.0171.290.75
46I,90M53326264.52611243.2233.8153.2171.0110.74
54V,82A,90M4256122382230223.82336744202.441.61
46I,84V,90M3504527382526267.426231617222.0114.04
84V,90M348182123218.6224.52216106.2202.282.15
54V,82A33910181.5188.3171.9162.3713141.940.82
46I,54V,84V,90M32695171461458172017249882166.09136
46L,54V,82A31644186.21819175.61632848151.1101.74
46L,54V,82A,90M304401310.01320127.01316548113.93102
46I2799.240.844.242.142.232.221.120.82
46I,54V,82A24614221.42211201.9184.3724160.950.62
46L2278.221.522.621.122.411.62  
46I,54V,82A,90M2224421202128215.921221552212.1131.77
82A2182.180.881.870.872.062.270.43 
54V,84V,90M146131554654251251552433172132
88S1288.9131.2132.5130.1146.034.31  
54V,90M1172.311.811.811.31 2.81  
30N,90M10981146.5143.0141.3146.642.24  
46L,90M961563.366.862.461422.440.620.72
46I,88S901971.476.170.276.110.71  
46L,82A886.111.317.415.81 7.01  
30N,46I862550.651.250.851.530.840.420.51
82A,90M826.121.627.121.625.512.72  
46I,84V761311115.616.71141141111 
54L,84V,90M7550619762053063251661.52192
84V732.582.881.972.373.822.072.623.61
48V,54V,82A6767220725522.826326021.120.71
32I,46I,82A,90M661631.731331237.331632.52621
54V641828.126.223.028.625.422.710.61
46L,54V,84V,90M63897257769632757710375.557.52
46I,47V,54V,84V,90M582372 1481542184217028.72131
32I,46I,47V,54M,82A,90M57761121881400188150011211121
46I,54V,82F,90M5712477.4710472576748974.34113
48V,54T,82A5792575048757.257855451.031.21
46L,54V,82A,84V,90M56429419339159725888184122
46L,54V,82A,84V565761476485516113612661252.11
46I,54V,76V,82A551181.683736.581.488280.51 
46I,50V,54V,82A,90M53154225160237145125211.42151
54V,82A,84V,90M53474974234104591524 3.71
48V,54V,82A,90M5232824582681.883642880.440.42
46I,54V,84V515876474271976339071.31151
32I,46I,47V,54L,84V,90M48784231429440043424450410245002
32I,46I,47V,54M,90M47        
46I,76V463.010.611314.41    
46I,54V,82A,84V,90M45942611532552961187210.01 
46I,54V,82A,84V452525921221623629927.71 
46I,82A436712214117.81431451  
32I,46I,54V,82A,90M42        
32I,46I,82A427.520.827.223.022.611.41  
54V,82F,90M403438.845121341135448.126.32
54V,82T,90M382747.441642.141821344.611.31
46I,54V,82T,84V,90M38904120377213411449641182 
48V,54V,82A,84V3818458341246.047028022.022.51
32I,46I,47V,54V,82A,90M373559.852941751559152.555.63
46I,54M,84V,90M375636932634838211171  
54L,90M371922924.124021325.022.123.41
46L,84V,90M3619519510.048.051047.043.442.84
54V,82A,84V361353058.151351234358.525.81
54V,82T362784.882481.061513.43  
46I,54V,76V,82A,90M352924.026.811422.811492  
46I,54L,84V,90M354311000111155110015815.31281
46L,82A,90M352121002132132321242351 
30N,46L35        
32I,46I,47V,82A341321.322221324815521.125.11
32I,46L,82A324.530.734.331.63 5.21  
46I,54V,82T,90M32175366310539.9377221339.621.11
50L320.3150.380.3150.3156.0190.35  
50V323.041.641.241441.426.74  
46I,54V,82T,84V32110310003170314321131003242 
32I,46I,47V,82A,90M3172133189183170015001151441
54L302.511.611.811411.714.611.713.61
30N,54V,90M3018045941042.24    
46I,54V,76V,84V,90M28        
46I,47V,54V,82A,90M28        
32I,46I,47V,54M,84V,90M2847322324340021013500310423732
82F284.130.332.523.41    
46L,48V,54V,82A27991100019019.01161112610.511.41
46I,54V,82T277.911.911814.011716410.811.11
46I,54V,82S266013315114.215219110.91 
54V,84V266212671341761120110915.11 
32I,46I,47V,90M266.211.114.413.51    
54L,82A,90M252531739.731532731734.52 
46I,82T251341.841342.846.531631.831.81
46I,54V,90M2513925362271302228113421325.61
54V,82F245723.423521621027126.61 
46I,47V,54M,84V,90M2353162133140015317612001361
46I,82T,84V234.171.777.273.271928.152.911.31
32I,46I,47V,54L,82A,90M224339.33263132338221332.71 
46L,48V,54V,82A,84V22643271334324394310733.13 
46I,82T,90M222942142443.143921641.410.91
46I,76V,84V,90M2115198124114711711231  
47V21        
46I,50V213.331.431.422130.91153  
82T21        
46L,48V,54V,82A,90M21441 4016.91 391  
46I,82A,84V214.413.413.816.313.117.911.311.31
48V,54S,82A211193100031543153128211731.533.93
46L,54L,82A,90M201313.917.916.0110.011110.71 
48V,90M205.321925.022.02 1.21  
46I,54V,76V,84V20        
32I,46I,47V208.011.011616.619.018.711.612.51
46L,54V,76V,82A201732.533531532.0212030.61 
88S,90M209733431730.73671102  
46I,76V,90M208.243.041739.132.622320.821.51
54V,82T,84V,90M197229116121121871981  
32I,46I,47V,54M,82A192541.84284101412422145.33811
54M,90M19        
48V,54T,82A,90M191651  7.61 15111.31 
48V,82A197.536.536.632.93    
46I,82A,90M182034.032537.031121432.115.01
46I,88S,90M186726.721620.721612.321.021.02
46L,48V,54T,82A181393467217138.73 663  
32I,46I,47V,54L,90M187417011118918917111.21481
46I,82F,90M185021.82372132122372  
46I,54M,76V,84V,90M17        
54V,82S171514.011710.911711911.11 
82L170.840.740.640.841.140.641.341.14
76V17        
54V,82T,84V17242662262112251412461 
48V,54V,82S16        
48V16        
32I,47V16        
46L,48V,54S,82A169912931117114157110511.41 
46I,54L,76V,84V,90M16        
48V,54V,82S,90M16        
32I,47V,54M,90M1663252234215227621302102 
46I,82T,84V,90M163227223223.42 171  
82T,90M16        
30N,54L,90M1515662264.561163641430.82161
46I,76V,84V155.822.82212192 332  
46I,54V,82F151910.11 1.71 5.81  
30N,46I,90M1512111516.012.516.612.41  
54M,84V,90M15        
46L,54V,76V,82A,90M156.813.812215.610.713310.912.51
54A,82A,90M15136366314339.33242110832.71 
46I,54V,82F,84V,90M15        
54L,84V148.222722.622821429.421.62 
48V,54A,82A14        
54M144.711.912.011213.412.91  
32I147.712.213.312.014.011.812.311.41
46I,50V,54V,82A14        
82A,84V141313116.81431 291  
32I,47V,54L,84V,90M14        
48V,54V,90M14        
46L,54V,84V14426262923472612504211321252251
46L,54V,82T146826224421226327226.31 
46I,48V,54T,82A14106221728026.723416910.41 
46L,54L,82A,84V,90M13        
32I,46I13        
32I,47V,54M,84V,90M13        
46I,47V,54M,76V,84V,90M13        
46I,50V,54V,90M13931100015.013114719410.51301
46L,84V135.721325.422.825.612.821.31 
46L,54A,82A13        
48V,82A,90M13   2.11    
54A,82A13184113511061191133113615.11 
32I,46I,90M12        
46I,47V,54V,84V12234604164414392804172 
82A,84V,90M12        
48M,54V,82A,90M12144135011801111 1011  
54T12        
46I,50V,90M12        
46L,54L,82A121122.427.221221411522.11 
32I,46L,82A,90M12        
46L,54M,84V,90M1280253324422742395228521123142
46L,54L,84V,90M12591100110.01881 281  
30N,84V,90M126002700221229211423023.117.21
48V,54V,82A,84V,90M111131100011021301 1221  
46I,82F117.410.212.312.21 4.51  
46I,54L,82A,90M11250150110911191311129212.81 
32I,47V,54M,82A,90M11        
84C116763762.767.465.032.24  
46L,82A,84V11        
46L,88S111251.252.950.15    
46I,54V,76V,82T1155213250022229.3250021.623.62
54V,76V,82A1110.052.252946.252.959151.321.61
48V,50V,54A,82A10        
46I,54M,90M10241151131581 171  
46I,54A,82A,90M1089159115015.61651751  
46I,47V,54L,84V,90M10        
54L,82A,84V,90M1060115812419011801801171221
32I,46I,47V,54V,82A10        
48V,54S,82A,90M10        
46L,54V,90M10        
32I,46I,47V,84V,90M10        
46I,54L,90M101421.423.821225.223320.423.82
46I,54V,76V,90M101.610.618.712.91 4610.81 
46I,54A,82A9        
30N,54V9        
46I,84A960066286656326523145  
48M,54V,82A9        
46I,76V,82F,90M9        
46L,54V,82F9        
46I,82A,84V,90M938199120126112214816.01 
48V,50V,54S,82A92021293122411121112132410.91 
46I,54V,82C,84V,90M9        
48V,50V,54V,82A9        
32I,82A9        
46I,54M,84V91911518.219912112912.21271
30N,54L,84V,90M9217110417.4140015012811.01511
46L,82A,84V,90M9202432152182492312141151
50V,54V,90M9        
32I,54L,84V,90M9673333183300326035435.531922
46I,48V,50V,54S,82A91134100034003904100450031.62391
54V,82C,90M8        
46L,54V,82F,90M8        
46I,48V,54S,82A8        
30N,54L8        
46L,54M,82A,90M86123126126527429823.023.51
30N,54V,82A,90M8600112614916.6110015211.71 
46L,48V,54V,82S8        
46I,54V,82S,90M8        
46I,48V,50V,54T,82A8531100011601130149150011.71541
54V,82M,90M8        
46I,54V,76V8        
46I,76V,82A83.810.411814.311.21231  
32I,46I,47A84920.822624528.8116523.129.31
46L,54V,82C,84V,90M8        
82L,90M82.611.211.41  1.21  
30N,84V823213318.213.91491   
46L,82T8        
54M,82A,90M7        
30N,54V,84V,90M7        
46I,54V,82C,90M7        
46I,48V,90M7        
46I,54M,82A,90M7        
46L,48A,54V,82A7        
50V,54V,82A7191337119143112110610.31 
32I,46I,47V,54L,82A7        
46L,48V,54T,82A,90M76001100015001361700126313.6110.01
46I,47V,54V,82F,90M7        
46I,54V,76V,82F71610.914619.511.011121  
46L,54V,82C,90M71781 581171 931  
32I,47V,54L,90M7321151191431 671  
30N,46I,84V,90M7        
32I,46I,47A,90M7        
46L,54L73.612.412.915.113.015.010.812.41
46L,48V,54V,82A,84V,90M7362 172202 822  
54V,82C,84V,90M7        
46L,48V,82A,90M7        
32I,46L,54V,82A,90M7198221121192402191210224.92 
46I,47V,54V,82A71614.8110.018.716.816112.91 
32I,47A,90M7        
32I,90M7        
46L,54L,82A,84V7        
32I,46I,47V,84V73126.02172412402772161251
46L,54V,82T,84V725137152119153159120015.61
46I,50V,54V,82T,90M7        
30N,46I,54V,82A7600123146134144150012.217.81
32I,46L,54V,82A7        
50V,54V,82A,90M6        
30N,82A64512.311.811.212.511.21  
82F,90M62211.311515.716.111211.71 
46I,47V,76V,84V6        
46I,54L6        
46I,47V,54V,90M6        
46I,50V,82A,90M6        
54L,82A,84V6        
46L,54A,82A,90M6        
30N,46I,82A6        
46I,54L,76V,84V63.211.417.113012.318010.51 
32I,46I,47V,54L,82A,84V,90M6        
32I,54V,82A,90M612412619.317.714212115.813.11
48V,54V6        
48V,82A,84V6        
48V,54A,82A,90M6214128012091251336126011.31 
46L,54V,82T,90M642154147110.01321871121 
46I,54V,76V,82F,90M66622.3233522422.5225521.12 
30N,50V6        
46I,50V,76V63.140.64 2041.14254  
32I,54V,84V,90M6511100014714001111150019.511401
48A,54V,82A,90M5        
46L,48V,82A5        
32I,46I,47V,82T,90M51141591400144118711391  
32I,47V,82A52.110.213.312.11 2.710.410.51
82S51511.611811311313818.91 
54M,82A,84V,90M5        
50V,90M51018.412.911312.01121  
54V,76V,82A,90M5        
32I,46I,54V,82A5        
46I,82F,84V52041791541 17212561  
46I,47V,54L,82A,90M5        
32I,46L,54L,84V,90M569239219223629728924.821762
46L,48V,54S,82A,90M5        
46I,54V,84A539821000214823724772632  
46I,84V,88S56611211210.31311   
46L,54L,90M52211514.412511318.011.31121
46I,47V,54M,90M5        
46I,82F,84V,90M5        
30N,46I,54V,90M5        
46L,48A,54V,82A,90M5        
32I,46I,47V,54L,84V5        
48M,50V,54V,82A,90M5        
30N,46I,54L,90M555014516.81281    
46I,47A,84V5        
54A,82F5        
32I,46I,84V,90M5        
46L,54L,84V5        
54M,82A57.731.935.032234.031131.111.21
46L,48S,54V,82A587220921723.12 1022  
48V,50V,54T,82A511512711121197182128610.91 
46L,76V51.110.814.419.610.619.810.41 
46I,47V,84V,90M5        
54V,82S,90M53239.431632.831115134.11 
46I,47V,54V,82C,90M567140019.414015811161291 
32I,46I,47V,54M,82T,90M4163153573114370328732003753
46I,54M,76V,82A,90M4        
46I,47V,54V,82T,90M4        
32I,46I,47V,50V,82A4        
32I,46L,47V,82A42514.812911212316113.71 
46L,50V4        
46I,47V,54M,84V4        
46L,48V,54M,82A,84V4        
46I,50V,54V,76V,82A4        
32I,46I,84V4        
46L,54M,82A,84V4        
46L,54V,82S,90M4        
46L,54V,82C,84V4        
46I,50L4        
32I,46L4        
48A,54V,82A4        
32I,46I,47V,54M,84V4261141191126156113014.31 
32I,54V,90M46925923121429621512.018.01
46I,54M,76V,90M4        
46I,47V,54L,76V,84V,90M4        
32I,47V,54M,82T,90M4        
46L,54V,82S4        
46I,48V,54T,82S4        
46L,50V,54V,82A,90M4        
32I,47V,90M4        
30N,46L,54L,90M4        
32I,46I,54L,82A,90M4128140012313411121721931 
46I,54A,82F,90M4        
46I,54V4        
46I,50V,82A4        
46I,48V,54T,82A,90M41181267116016.9110514911.01 
46I,76V,82F46.510.512112710.61541  
46L,54M,90M43213.718.319.91    
46L,54V4        
46I,54L,82T,90M4        
46L,82T,90M4        
32I,46I,47A,82A42820.6250255219250026.32132
32I,82A,90M42314.911411519.311611.01 
46I,47V,54V,82F4        
47V,54V,82A4        
32I,46I,54M,82A,90M44713.512115716913314.41 
32I,46I,54M,82A42911.81201311    
32I,46I,47V,50V,54L4        
46I,54A,84V,90M4        
46L,48V,54V,82T4        
46I,54M4        
46I,54V,82F,84V42514.912315211411361  
30N,46L,54V,90M4        
46I,54T,82A,90M4        
46I,47V,54M4        
82T,84V,90M4        
46L,48T,54V,82A,84V4        
46I,48V,82A,84V,90M4        
32I,54L,82T,90M42611312111712611410.41 
46I,50V,54A,82A,90M3        
30N,46L,90M3        
32I,54L,82A,84V,90M3        
48V,50V,54A,82A,90M3441263323672762134240720.82141
46I,54V,76V,82A,84V36.512.81 3415.81831  
48A,54V,82S,90M3        
48A,54V,82S3        
46L,48A,54V,82A,84V,90M3        
46L,48V,50V,54V,82A3        
48V,54V,82C,90M3        
54A,84V,90M3        
46L,48V,54V,82S,84V3        
48V,54S,82A,84V3        
46L,54M,76V,82A3        
46I,47V,54M,76V,84V3        
54V,82F,84V3        
32I,46I,82T,84V3        
32I,47V,54V,82A,90M3        
46L,48V,54V,82T,84V3        
48V,84V,90M3        
50V,82A,90M3        
46L,54L,82T,90M312110.01161131141111  
32I,46L,54M,82A,90M3        
32I,46L,47V,54V,82A,90M3        
54V,82F,84V,90M3        
46L,48M,54S,82A337129314311716717316.11 
48A,54V,82A,84V,90M3        
46I,54L,82A,84V,90M3        
32I,47A,82A3        
54S3        
46I,47V,76V,84A32101691152114112111041  
54M,82M,90M31312.018.612111315.913.01 
48V,82C,90M3        
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46I,50V,82T,90M3191181181371 1001  
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32I,47V,54M,84V3        
46I,47A,84V,90M3        
32I,46I,82A,84V37.813.817.711614511917.91121
50L,82A30.710.310.810.711210.710.410.21
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46I,54V,82M,90M3        
46I,48V,54V,82A3        
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30N,46I,54V350011416.114.21    
46I,54L,82T38.912.915.411.81121 0.710.81
30N,54L,84V37216.912.811.11121   
54A,82F,90M3        
46L,84C33953923113203 3.13  
32I,46I,47V,54V,84V,90M397162159114013471500120011141
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32I,46I,54V,84V,90M3        
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32I,46I,54V,90M3        
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32I,47A3        
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54V,82M3        
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46I,47V,90M31712.818.613.913.111512.913.01
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46I,54V,76V,82M,90M3        
46I,50V,54V,82L,90M3        
46L,82L31.310.510.712.11 0.81  
46I,48Q,54T,82F,90M3        
46I,48V,54V,82A,84V,90M2        
46I,50V,54V,82S2        
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46I,54M,84A2600110001400140017001591  
32I,46L,54L,82A,90M2        
32I,46I,54L,84V,90M26015317.2184131514514.91941
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32I,46I,54V,82A,84V,90M2        
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48V,50V,54V,82A,90M2        
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32I,48V,54M,82A,84V2        
46I,47V,76V2        
46L,50V,82A27.316.814.3110113.415512.91 
46I,48M,54S,82A,90M2        
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46I,82L2        
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54V,82L2        
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46I,54S,82A,90M21561280117617211011148110.01 
46I,54L,84V29.714.912.517.512.112.511.41 
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46I,50L,54V,82A,90M29.723.128.225.0214221321.121.71
46I,76V,82A,84V2        
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32I,46I,47V,54M,82A,84V2        
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54V,88S2        
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54L,82L,90M2        
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48V,54V,82T,90M2        
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32I,47V,54L,82A,90M2        
46I,47V,50V,76V,82A2        
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50V,54L2        
32I,46L,47V,54M,82A2        
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46L,54V,82F,84V,90M2        
46I,54L,82T,84V2        
46L,48M,54M,82A,84V27.227928.224722424124.52132
32I,46I,47V,50L,82T,90M28.311.311312.2116118.014.510.71
48M,50V,54V,82T2        
82S,84V,90M2        
46I,48V,82A,90M2        
32I,46I,54M,90M2452312 302592132  
46I,54V,82L,84V,90M2        
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46L,48V,54T,82T2        
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46I,47V,54A2        
76V,90M2        

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