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Mutation Scoring

240 http://hivdb.stanford.edu/cgi-bin/Marvel.cgi?pos= &drug= &class= window2  

 

Unusual/Bad Quality (interpretation not done)

Sequence Quality Assessment

Gene QA Problem Codons Stop Codons, Frame Shifts: None B,D,H,V,N: Unusual Residues: G-A Hypermutated:

Blue lines indicate differences from consensus B; tall blue lines indicate sites associated with drug resistance. Red lines indicate QA problems.

Unusual/Bad Quality (interpretation not done)

Summary Data

Sequence includes PR: codons: - Sequence includes RT: codons: - Sequence includes IN: codons: -

This sequence is G-A Hypermutated There are no insertions or deletions

There is a reading frame shift! Please examine the sequence carefully. The presence of a reading frame shift (insertions or deletions that are not multiples of 3 NA) suggests the possibility of a sequencing error. Reading frame shifts in this sequence are shown below. A region of the underlying raw alignment text on either side of the reading frame shift is also shown. Shift of length nucleic acids at codon in

Subtype and % similarity to closest reference isolate: : (%)

This sequence is G-A Hypermutated

AA Insertion: codon AA: NA:
AA Deletion: codon

Drug Resistance Interpretation:

PI Major Resistance Mutations: NRTI Resistance Mutations: IN Major Resistance Mutations: None None None PI Minor Resistance Mutations: NNRTI Resistance Mutations: IN Minor Resistance Mutations: None None None Other Mutations: None 60 40 60 Protease Inhibitors Nucleoside RTI Integrase Inhibitors 40 Non-Nucleoside RTI

Comments PIMajor PIMinor Special Other NRTI NNRTI Special Other INIMajor INIMinor Special Other

None , , ()