<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> HIVdb: Genotypic Resistance Interpretation Algorithm
Seq ID:


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HIVdb: Genotypic Resistance Interpretation Algorithm

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The Team

The Data

Mutation Scoring
240

http://hivdb.stanford.edu/cgi-bin/Marvel.cgi?pos= &drug= &class= window2

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Unusual/Bad Quality (interpretation not done)


Sequence Quality Assessment
Gene QA Problem Codons
Stop Codons, Frame Shifts: None
B,D,H,V,N:
Unusual Residues:
G-A Hypermutated:
Blue lines indicate differences from consensus B; tall blue lines indicate sites associated with drug resistance.
Red lines indicate QA problems.


Unusual/Bad Quality (interpretation not done)


Summary Data
Sequence includes PR: codons: -
Sequence includes RT: codons: -
Sequence includes IN: codons: -
This sequence is G-A Hypermutated
There are no insertions or deletions
    There is a reading frame shift! Please examine the sequence carefully. The presence of a reading frame shift (insertions or deletions that are not multiples of 3 NA) suggests the possibility of a sequencing error. Reading frame shifts in this sequence are shown below. A region of the underlying raw alignment text on either side of the reading frame shift is also shown.

  1. Shift of length nucleic acids at codon in
Subtype and % similarity to closest reference isolate:
  1. : (%)
This sequence is G-A Hypermutated
AA Insertion: codon AA: NA:
AA Deletion: codon
Drug Resistance Interpretation:
PI Major Resistance Mutations: NRTI Resistance Mutations: IN Major Resistance Mutations: None None None
PI Minor Resistance Mutations: NNRTI Resistance Mutations: IN Minor Resistance Mutations: None None None
Other Mutations: None

60 40 60
Protease Inhibitors Nucleoside RTI Integrase Inhibitors
40
Non-Nucleoside RTI
Comments
    PIMajor
    PIMinor
    Special
    Other
    NRTI
    NNRTI
    Special
    Other
    INIMajor
    INIMinor
    Special
    Other
None , , ()