Genbank References
BLAST search against GenBank file v. V 194.0 released on 2013-02-15
(search results include 158797 sequences from 1895 references)
| This page contains a list of all GenBank entries on HIV-1 protease, RT and
integrase grouped by reference. The reference may include a published paper or the title provided with the GenBank submission. The purpose of this page is to show which GenBank entries are in the HIV Drug Resistance Database and which aren't. The last column (Annotation) of the table shows whether or not there are plans to add the entry to the database. Each entry in the Annotation column is linked to a page explaining the annotation. The entries were created by performing a BLAST search of the GenBank using the consensus B protease, RT and integrase amino acid sequence (give link to the sequences). The E-value column contains the lowest e-value (best match) for all the GenBank entries associated with a specific reference. The columns, # in GB, # in HIVDB, and % in HIVDB indicate the number of entries in GenBank associated with the reference, the number of these entries that are also in the HIV Drug Resistance Database, and the % of GenBank entries from a particular reference that are in the HIV Drug Resistance Database. For a treatment summary for every isolate in our database and in the GenBank, click here. This file indicates whether or not the person from whom the sequenced virus was obtained had received one or more nucleoside RT inhibitor, nonnucleoside RT inhibitor, or protease inhibitor. |
| Authors | Title | Citation | E-value | # in HIVDB | # in Gb | % in HIVDB | Annotation |
|---|---|---|---|---|---|---|---|
| Abecasis (2007) | RECOMBINATION confounds the early evolutionary history of human immunodeficiency virus type 1: subtype g is a circulating recombinant form | J. Virol. 81 (16), 8543-8551 (2007) | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Abecasis (2011) | Molecular epidemiological analysis of paired pol/env sequences from portuguese HIV-1 patients | AIDS Res. Hum. Retroviruses (2011) In press | 0 | |
154 18PR 154RT |
0 | ARV Rx and/or other data are N/A |
| Acharya (2009) | Human immunodeficiency virus type 1 drug resistance mutations in patients from India | Unpublished | 1e-178 | |
1 1RT |
0 | Unpublished |
| Achkar (2004) | INFECTION with group M non-B HIV-1 subtypes in individuals living in New York City | Unpublished | 1e-159 | |
34 34PR 3RT |
0 | ARV Rx and/or other data are N/A |
| Adachi (1986) | PRODUCTION of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone | J. Virol. 59 (2), 284-291 (1986) | 1e-165 | 1PR 1RT 1IN |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Adojaan (2004) | PREDOMINANCE of a Rare Type of HIV-1 in Estonia | J. Acquir. Immune Defic. Syndr. 39 (5), 598-605 (2005) | 0 | 4 4PR 4RT 4IN |
143 142PR 4RT 4IN |
2 | HIVDB |
| Aghokeng (2007) | FULL-LENGTH sequence analysis of SIVmus in wild populations of mustached monkeys (Cercopithecus cephus) from Cameroon provides evidence for two co-circulating SIVmus lineages | Virology 360 (2), 407-418 (2007) | 0 | 5 3PR 5RT 5IN |
5 5RT 5IN |
100 | HIVDB |
| Aghokeng (2009) | Evaluation of transmitted HIV drug resistance among recently-infected antenatal clinic attendees in four Central African countries | Antivir. Ther. (Lond.) 14 (3), 401-411 (2009) | 0 | 135 135PR 135RT |
135 3PR 135RT |
100 | HIVDB |
| Aghokeng (2010) | Extensive survey on the prevalence and genetic diversity of SIVs in primate bushmeat provides insights into risks for potential new cross-species transmissions | Infect. Genet. Evol. (2009) In press | 0 | |
20 2RT 20IN |
0 | Pending |
| Aghokeng (2010) | Genetic diversity of simian lentivirus in wild De Brazza's monkeys (Cercopithecus neglectus) in Equatorial Africa | J. Gen. Virol. 91 (PT 7), 1810-1816 (2010) | 2e-70 | |
1 1IN |
0 | Pending |
| Aghokeng (2011) | High Failure Rate of the ViroSeq HIV-1 Genotyping System for Drug Resistance Testing in Cameroon, a Country with Broad HIV-1 Genetic Diversity | J. Clin. Microbiol. 49 (4), 1635-1641 (2011) | 1e-176 | 145 145PR 145RT |
145 22PR 145RT |
100 | HIVDB |
| Aghokeng (2011) | Scale-up of antiretroviral treatment in sub-Saharan Africa is accompanied by increasing HIV-1 drug resistance mutations in drug-naive patients | AIDS 25 (17), 2183-2188 (2011) | 0 | 85 85PR 85RT |
85 7PR 85RT |
100 | HIVDB |
| Aghokeng (2013) | Virological outcome and patterns of HIV-1 drug resistance in patients with 36 months' antiretroviral therapy experience in Cameroon | J Int AIDS Soc 16, 18004 (2013) | 0 | |
65 3PR 65RT |
0 | Pending |
| Agneskog (2008) | CHANGES in mutation patterns of a mosaic genome HIV-1 strain after treatment with nucleoside analogs and the integrase inhibitor raltegravir | Unpublished | 1e-173 | |
4 2RT 2IN |
0 | Pending |
| Agwale (2003) | GENOTYPIC and phenotypic analyses of human immunodeficiency virus type 1 in antiretroviral drug-naive nigerian patients | AIDS Res. Hum. Retroviruses 22 (1), 22-26 (2006) | 5e-81 | 18 18PR 18RT |
18 18PR 18RT |
100 | HIVDB |
| Agwu (2008) | Analyses of HIV-1 Drug-Resistance Profiles Among Infected Adolescents Experiencing Delayed Antiretroviral Treatment Switch Following Initial Nonsuppressive Highly Active Antiretroviral Therapy | Unpublished | 1e-155 | |
155 146PR 31RT |
0 | Pending |
| Ahuka-Mundeke (2010) | Full-length genome sequence of a simian immunodeficiency virus (SIV) infecting a captive agile mangabey (Cercocebus agilis) is closely related to SIVrcm infecting wild red-capped mangabeys (Cercocebus torquatus) in Cameroon. | J Gen Virol | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Ahuka-Mundeke (2011) | Novel Multiplexed HIV/Simian Immunodefi ciency Virus Antibody Detection Assay | Emerging Infect. Dis. 17 (12), 2277-2286 (2011) | 4e-65 | |
7 7IN |
0 | Gene fragment(s) |
| Ahumada-Ruiz (2009) | Analysis of HIV-1 pol sequences from Panama: identification of phylogenetic clusters within subtype B and detection of antiretroviral drug resistance mutations | Infect. Genet. Evol. 9 (5), 933-940 (2009) | 0 | |
136 80PR 135RT |
0 | Pending |
| Ait-Khaled (2002) | MUTATIONS in HIV-1 reverse transcriptase during therapy with abacavir, lamivudine and zidovudine in HIV-1-infected adults with no prior antiretroviral therapy | Antivir. Ther. (Lond.) 7 (1), 43-51 (2002) | 1e-98 | 156 156RT |
156 156RT |
100 | HIVDB |
| Ajoge (2011) | Drug Resistance Pattern of HIV Type 1 Isolates Sampled in 2007 from Therapy-Naive Pregnant Women in North-Central Nigeria | AIDS Res. Hum. Retroviruses (2011) In press | 0 | 28 28RT |
28 28RT |
100 | HIVDB |
| Akrim (2012) | HIV-1 Subtype distribution in morocco based on national sentinel surveillance data 2004-2005 | AIDS Res Ther 9 (1), 5 (2012) | 3e-52 | |
29 29PR |
0 | ARV Rx and/or other data are N/A |
| Albert (1992) | PERSISTENCE of azidothymidine-resistant human immunodeficiency virus type 1 RNA genotypes in posttreatment sera | J. Virol. 66 (9), 5627-5630 (1992) | 5e-55 | |
20 20RT |
0 | Case report(s) / study subset |
| Albert (1994) | ANALYSIS of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes | J. Virol. 68 (9), 5918-5924 (1994) | 4e-77 | 23 23RT |
26 26RT |
88 | HIVDB |
| Alcalde (2012) | Clinical, epidemiological and molecular features of the HIV-1 subtype C and recombinant forms that are circulating in the city of Sao Paulo, Brazil | Virol. J. 9, 156 (2012) | 0 | |
86 77PR 18RT |
0 | Pending |
| Alcantara (2012) | HIV-1 mother-to-child transmission and drug resistance among Brazilian pregnant women with high access to diagnosis and prophylactic measures | J. Clin. Virol. 54 (1), 15-20 (2012) | 1e-51 | |
44 44PR |
0 | Pending |
| Alcantara (2012) | Direct Submission | Submitted (13-JUN-2011) Immunology, Federal Univer | 2e-52 | |
24 24PR |
0 | Unpublished |
| Alencar (2012) | Prevalence of genotypes and primary drug resistance among HIV+ Brazilian blood donors | Unpublished | 1e-170 | 147 147PR 147RT |
147 146PR 1RT |
100 | HIVDB |
| Alexander (2002) | INHIBITION of Human Immunodeficiency Virus Type 1 (HIV-1) Replication by a Two-Amino-Acid Insertion in HIV-1 Vif from a Nonprogressing Mother and Child | J. Virol. 76 (20), 10533-10539 (2002) | 0.027 | |
1 1IN |
0 | Gene fragment(s) |
| Ali (2010) | Structure-based design, synthesis, and structure-activity relationship studies of HIV-1 protease inhibitors incorporating phenyloxazolidinones | J. Med. Chem. 53 (21), 7699-7708 (2010) | 1e-166 | |
6 3PR 4RT |
0 | Laboratory/experimental isolate |
| Alizon (1986) | GENETIC variability of the AIDS virus: nucleotide sequence analysis of two isolates from African patients | Cell 46 (1), 63-74 (1986) | 1e-165 | 2 1PR 1RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Allan (1993) | SPECIES-SPECIFIC diversity among simian immunodeficiency viruses from African green monkeys | J. Virol. 65 (6), 2816-2828 (1991) | 2e-33 | |
8 8IN |
0 | Laboratory/experimental isolate |
| Allen (2005) | SELECTIVE Escape from CD8+ T-Cell Responses Represents a Major Driving Force of Human Immunodeficiency Virus Type 1 (HIV-1) Sequence Diversity and Reveals Constraints on HIV-1 Evolution | J. Virol. 79 (21), 13239-13249 (2005) | 0 | |
14 14PR 14RT 14IN |
0 | Evolution/quasispecies study |
| Altfeld (2003) | HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus | Nature 420 (6914), 434-439 (2002) | 0 | |
2 2PR 2RT |
0 | Case report(s) / study subset |
| Amoedo (2011) | Expression of APOBEC3G/3F and G-to-A Hypermutation Levels in HIV-1-Infected Children with Different Profiles of Disease Progression | PLoS ONE 6 (8), E24118 (2011) | 2e-52 | |
101 101PR |
0 | Evolution/quasispecies study |
| An (2012) | Reconstituting the epidemic history of CRF01_AE among MSM in Liaoning, northeastern China: Implication in expanding MSM epidemic in China | J. Virol. (2012) In press | 0 | 39 39PR 39RT 39IN |
39 13PR 39RT 39IN |
100 | HIVDB |
| Anderson (2000) | TESTING the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E | J. Virol. 74 (22), 10752-10765 (2000) | 1e-164 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Anderson (1993) | ANALYSIS of envelope changes acquired by SIVmac239 during neuroadaption in rhesus macaques | Virology 195 (2), 616-626 (1993) | 5e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Andersson (1999) | MOLECULAR characterization of HIV-1 and HIV-2 in individuals from Guinea-Bissau with single or dual infections: predominance of a distinct HIV-1 subtype A/G recombinant in West Africa | Virology 261 (1999) In press | 2e-66 | 7 7RT |
7 7RT |
100 | HIVDB |
| Andreani (2008) | CLINICAL evolution and antiretroviral resistance patterns in HIV-1 dual infected patients in Argentina | Unpublished | 1e-151 | |
116 100PR 51RT |
0 | Evolution/quasispecies study |
| Andresen (2007) | CHARACTERIZATION of Near Full-Length Genomes of HIV Type 1 Strains in Denmark: Basis for a Universal Therapeutic Vaccine | AIDS Res. Hum. Retroviruses 23 (11), 1442-1448 (2007) | 0 | 17 17PR 17RT 17IN |
17 13PR 17RT 17IN |
100 | HIVDB |
| Anta (2010) | Identification of a new HIV-1 circulating recombinant form in Spain | Unpublished | 0 | |
4 4RT |
0 | Unpublished |
| Anton (2004) | GENOTYPIC Resistance to Efavirenz/Protease Inhibitor Regimens | Unpublished | 0 | |
219 219PR 219RT |
0 | ARV Rx and/or other data are N/A |
| Apetrei (1998) | HUMAN immunodeficiency virus type 1 subtype F reverse transcriptase sequence and drug susceptibility | J. Virol. 72 (5), 3534-3538 (1998) | 1e-77 | 14 14RT |
14 14RT |
100 | HIVDB |
| Apetrei (2003) | HIV type 1 diversity in Northeastern Romania in 2000-2001 based on phylogenetic analysis of pol sequences from patients failing antiretroviral therapy | AIDS Res. Hum. Retroviruses 19 (12), 1155-1161 (2003) | 1e-117 | 163 77PR 86RT |
163 77PR 86RT |
100 | HIVDB |
| Apetrei (2004) | DIRECT Inoculation of Simian Immunodeficiency Virus from Sooty Mangabeys in Black Mangabeys (Lophocebus aterrimus): First Evidence of AIDS in a Heterologous African Species and Different Pathologic Outcomes of Experimental Infection | J. Virol. 78 (21), 11506-11518 (2004) | 4e-71 | |
18 18IN |
0 | Laboratory/experimental isolate |
| Apetrei (2005) | MOLECULAR Epidemiology of Simian Immunodeficiency Virus SIVsm in U.S. Primate Centers Unravels the Origin of SIVmac and SIVstm | J. Virol. 79 (14), 8991-9005 (2005) | 4e-90 | 47 47IN |
47 47IN |
100 | HIVDB |
| Apetrei (2006) | POTENTIAL for HIV transmission through unsafe injections | AIDS 20 (7), 1074-1076 (2006) | 1e-148 | |
21 17PR 13RT |
0 | ARV Rx and/or other data are N/A |
| Apetrei (2007) | SIVSMM Subtypes Induce Specific Immunologic and Virologic Changes in Naturally-Infected Sooty Mangabeys | Unpublished | 3e-70 | |
96 96IN |
0 | Pending |
| Arien (2005) | REPLICATIVE fitness of historical and recent HIV-1 isolates suggests HIV-1 attenuation over time | AIDS 19 (15), 1555-1564 (2005) | 0 | 23 23PR 23RT |
23 23RT |
100 | Case report(s) / study subset |
| Armenia (2011) | Study of Genotypic and Phenotypic HIV-1 Dynamics of Integrase Mutations During Raltegravir Treatment: A Refined Analysis by Ultra-Deep 454 Pyrosequencing | J Infect Dis (2012) | 1e-168 | |
40 40IN |
0 | Pending |
| Arnold (1995) | AT least five HIV-1 sequence subtypes (A, B, C, D, A/E) occur in England | AIDS Res. Hum. Retroviruses 11 (3), 427-429 (1995) | 1e-126 | |
4 4PR |
0 | Case report(s) / study subset |
| Arroyo (2004) | HIV Type 1 Subtypes among Blood Donors in the Mbeya Region of Southwest Tanzania | AIDS Res. Hum. Retroviruses 20 (8), 895-901 (2004) | 0 | 20 20PR 20RT 20IN |
20 20PR 20RT 20IN |
100 | HIVDB |
| Arroyo (2006) | HIV-1 diversity and prevalence differ between urban and rural areas in the Mbeya region of Tanzania | AIDS 19 (14), 1517-1524 (2005) | 0 | 14 14PR 14RT 14IN |
14 8PR 14RT 14IN |
100 | HIVDB |
| Arruda (2012) | Short communication: intermediate prevalence of HIV type 1 primary antiretroviral resistance in Ceara State, Northeast Brazil | AIDS Res. Hum. Retroviruses 27 (2), 153-156 (2011) | 1e-49 | 1 1PR |
1 1PR |
100 | HIVDB |
| Arruda (2009) | Genetic diversity on the integrase region of the pol gene among HIV-1-infected patients naive for integrase inhibitors in Sao Paulo city, Brazil | AIDS Res. Hum. Retroviruses 26, 1 (2010) | 1e-168 | 76 76IN |
76 76IN |
100 | HIVDB |
| Arruda (2010) | Differences in frequencies of pi-resistance mutations from HIV-1 of different subtypes (B, C and F) in a cohort of patients failing arv therapy | Unpublished | 0 | |
869 245PR 787RT |
0 | Pending |
| Atkinson (2000) | CORRELATION between human immunodeficiency virus genotypic resistance and virologic response in patients receiving nelfinavir monotherapy or nelfinavir with lamivudine and zidovudine | J. Infect. Dis. 182 (2), 420-427 (2000) | 1e-123 | 49 49PR |
78 50PR 28RT |
62 | HIVDB |
| Aulicino (2004) | CIRCULATION of novel HIV type 1 A, B/C, and F subtypes in Argentina | AIDS Res. Hum. Retroviruses 21 (2), 158-164 (2005) | 0 | 1 1PR 1RT 1IN |
3 2PR 3RT 1IN |
33 | HIVDB |
| Aulicino (2005) | SEQUENCE Analysis of a South American HIV Type 1 BC Recombinant | AIDS Res. Hum. Retroviruses 21 (10), 894-896 (2005) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Aulicino (2009) | HIV-1 non-nucleoside resistance mutations K103N + L100I are strongly associated with nucleoside resistance mutation L74V in BF recombinants from Argentine children under treatment failure, and reduce susceptibility to Etravirine | Antivir Ther. 2010;15(4):641-50 | 3e-52 | |
8 8PR |
0 | Pending |
| Auswinporn (2001) | GENOTYPIC subtyping of the HIV-1 polymerase gene in 30 naave patients from Thailand | Southeast Asian J. Trop. Med. Public Health 32 (2), 346-350 | 1e-121 | 6 6PR 6RT |
27 27PR 27RT |
22 | HIVDB |
| Auwanit (2001) | FULL-LENGTH sequences of two CRF01_ae (subtype e) HIV type 1 isolates from 1995 samples of patients with sexually transmitted diseases in Thailand | AIDS Res. Hum. Retroviruses 17 (9), 867-871 (2001) | 1e-165 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Auwanit (2009) | Detection of drug resistance-associated and background mutations in human immunodeficiency virus type 1 CRF01_AE protease and reverse transcriptase derived from drug treatment-naive patients residing in central Thailand | AIDS Res. Hum. Retroviruses 25 (6), 625-631 (2009) | 1e-149 | 62 43PR 19RT |
106 87PR 19RT |
58 | HIVDB |
| Avi (2009) | Emerging transmitted drug resistance in treatment-naive human immunodeficiency virus-1 CRF06_cpx-infected patients in Estonia. | Scand J Infect Dis | 1e-144 | 55 55PR 55RT |
55 55RT |
100 | HIVDB |
| Avi (2009) | Characterization of integrase region polymorphisms in HIV type 1 CRF06_cpx viruses in treatment-naive patients in Estonia. | ARHR | 1e-164 | 112 112IN |
114 114IN |
98 | HIVDB |
| AYEHUMIE (1991) | Human immunodeficiency virus type 1 proviral DNA | Unpublished (1991) | 4e-41 | |
8 8PR |
0 | Gene fragment(s) |
| Ayouba (2009) | Low prevalence of HIV type 1 drug resistance mutations in untreated, recently infected patients from Burkina Faso, Cote d'Ivoire, Senegal, Thailand, and Vietnam: the ANRS 12134 study | AIDS Res. Hum. Retroviruses 25 (11), 1193-1196 (20 | 4e-51 | 105 105PR |
105 105PR |
100 | HIVDB |
| Azevedo-Pereira (1998) | Primary human immunodeficiency virus type 2 (HIV-2) isolates infect CD4-negative cells via CCR5 and CXCR4: comparison with HIV-1 and simian immunodeficiency virus and relevance to cell tropism in vivo. | J Virol. | 2e-97 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Baalwa (2012) | Molecular identification, cloning and characterization of transmitted/founder HIV-1 subtype A, D and A/D infectious molecular clones | Virology 436 (1), 33-48 (2013) | 0 | |
477 49PR 194RT 477IN |
0 | Evolution/quasispecies study |
| Babic (2005) | PREVALENCE of antiretroviral drug resistance mutations and HIV-1 non-B subtypes in newly diagnosed drug-naive patients in Slovenia, 2000-2004 | Virus Res. 118 (1-2), 156-163 (2006) | 0 | 76 76PR 76RT |
76 63PR 76RT |
100 | HIVDB |
| Babic (2005) | MOLECULAR epidemiology of HIV-1 subtypes based on analysis of pol sequences in Slovenia, 1996-2005 | J. Med. Virol. 78 (8), 997-1002 (2006) | 0 | |
6 3PR 6RT |
0 | Case report(s) / study subset |
| Bacheler (2000) | HUMAN immunodeficiency virus type 1 mutations selected in patients failing efavirenz combination therapy | Antimicrob. Agents Chemother. 44 (9), 2475-2484 (2000) | 1e-130 | 3669 3646PR 3662RT |
3708 3708PR 3708RT |
98 | HIVDB |
| Bacheler (2001) | GENOTYPIC correlates of phenotypic resistance to efavirenz in virus isolates from patients failing nonnucleoside reverse transcriptase inhibitor therapy | J. Virol. 75 (11), 4999-5008 (2001) | 1e-126 | 67 66PR 67RT |
87 84PR 87RT |
77 | HIVDB |
| Badreddine (2007) | IDENTIFICATION and Characterization of HIV Type 1 Subtypes Present in the Kingdom of Saudi Arabia: High Level of Genetic Diversity Found | AIDS Res. Hum. Retroviruses 23 (5), 667-674 (2007) | 0 | 60 6PR 6RT 60IN |
60 6RT 60IN |
100 | HIVDB |
| Baier (1990) | COMPLETE nucleotide sequence of a simian immunodeficiency virus from African green monkeys: a novel type of intragroup divergence | Virology 176 (1), 216-221 (1990) | 1e-109 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Bailey (2007) | EVOLUTION of HIV-1 in an HLA-B*57-Positive Patient during Virologic Escape | J. Infect. Dis. 196 (1), 50-55 (2007) | 0 | |
38 35RT 6IN |
0 | Evolution/quasispecies study |
| Bailey (2008) | TRANSMISSION of Human Immunodeficiency Virus Type 1 from a Patient Who Developed AIDS to an Elite Suppressor | J. Virol. 82 (15), 7395-7410 (2008) | 0 | |
14 7PR 7RT 14IN |
0 | Case report(s) / study subset |
| Baker (2007) | HIV subtypes distribution and implication for antiretroviral treatment in a Ugandan population. | J Int Assoc Physicians AIDS Care (Chic) | 0 | 46 45PR 46RT |
46 26PR 46RT |
100 | HIVDB |
| Balakrishnan (2005) | HIV Type 1 Genotypic Variation in an Antiretroviral Treatment-Naive Population in Southern India | AIDS Res. Hum. Retroviruses 21 (4), 301-305 (2005) | 1e-139 | 49 49PR 49RT |
49 3PR 49RT |
100 | HIVDB |
| Balamane (2012) | Panel of Prototypical Recombinant Infectious Molecular Clones Resistant to Nevirapine, Efavirenz, Etravirine, and Rilpivirine | Antimicrob. Agents Chemother. (2012) In press | 1e-176 | 10 10RT |
10 10RT |
100 | HIVDB |
| Baldanti (2010) | Early emergence of raltegravir resistance mutations in patients receiving HAART salvage regimens | J. Med. Virol. 82 (1), 116-122 (2010) | 1e-156 | 11 11IN |
11 11IN |
100 | HIVDB |
| Baldrich-Rubio (2001) | A complex human immunodeficiency virus type 1 A/G/J recombinant virus isolated from a seronegative patient with AIDS from Benin, West Africa | J. Gen. Virol. 82 (PT 5), 1095-1106 (2001) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Balode (2010) | Direct Submission | Submitted (26-JAN-2010) Department of Virology, Sw | 1e-143 | |
7 6PR 4RT |
0 | Pending |
| Balode (2010) | Low prevalence of transmitted drug resistance among newly diagnosed HIV-1 patients in Latvia | J. Med. Virol. 82 (12), 2013-2018 (2010) | 1e-148 | 113 113PR 113RT |
113 85PR 67RT |
100 | HIVDB |
| Balotta (2000) | Prevalence of multiple dideoxynucleoside analogue resistance (MddNR) in a multicenter cohort of HIV-1 infected Italian patients with virologic failure. | JAIDS | 1e-133 | 149 132PR 149RT |
157 137PR 157RT |
94 | HIVDB |
| Balotta (2000) | PREVALENCE of transmitted nucleoside analogue-resistant HIV-1 strains and pre-existing mutations in pol reverse transcriptase and protease region: outcome after treatment in recently infected individuals | Antivir. Ther. (Lond.) 5 (1), 7-14 (2000) | 1e-128 | 71 33PR 38RT |
71 33PR 38RT |
100 | HIVDB |
| Balotta (2001) | INCREASING prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences | J. Acquir. Immune Defic. Syndr. 27 (5), 499-505 (2001) | 1e-100 | 19 19PR 19RT |
19 19PR 19RT |
100 | HIVDB |
| Bang (2007) | PREVALENCE of primary antiretroviral resistance: trends in Korea | AIDS Res. Hum. Retroviruses 24 (1), 83-85 (2008) | 0 | 81 81PR 81RT |
81 77PR 81RT |
100 | HIVDB |
| Banke (2009) | Positive selection pressure introduces secondary mutations at Gag cleavage sites in human immunodeficiency virus type 1 harboring major protease resistance mutations | J. Virol. 83 (17), 8916-8924 (2009) | 7e-52 | |
272 272PR |
0 | Pending |
| Bao (2008) | MOLECULAR tracing of sexual HIV Type 1 transmission in the southwest border of China | AIDS Res. Hum. Retroviruses 24 (5), 733-742 (2008) | 0 | |
2 1PR 2RT |
0 | Case report(s) / study subset |
| Bar (2010) | Wide variation in the multiplicity of HIV-1 infection among injection drug users | J. Virol. 84 (12), 6241-6247 (2010) | 3e-16 | |
390 390IN |
0 | Evolution/quasispecies study |
| Bar-Magen (2009) | Comparative Biochemical Analysis of HIV-1 Subtype B and C Integrase Enzymes | AIDS. 2010 Sep 10;24(14):2171-9. | 1e-165 | |
2 2IN |
0 | Laboratory/experimental isolate |
| Barber (2012) | Frequency and patterns of protease gene resistance mutations in HIV-infected patients treated with lopinavir/ritonavir as their first protease inhibitor | J. Antimicrob. Chemother. (2012) In press | 0 | 28 28PR 28RT |
28 9PR 28RT |
100 | HIVDB |
| Barditch-Crovo (2001) | PHASE i/ii trial of the pharmacokinetics, safety, and antiretroviral activity of tenofovir disoproxil fumarate in human immunodeficiency virus-infected adults | Antimicrob. Agents Chemother. 45 (10), 2733-2739 (2001) | 4e-96 | 14 14RT |
14 14RT |
100 | HIVDB |
| Barlow (2001) | RECOMBINANT strains of HIV type 1 in the United Kingdom | AIDS Res. Hum. Retroviruses 17 (5), 467-474 (2001) | 1e-109 | |
12 12PR 9RT |
0 | ARV Rx and/or other data are N/A |
| Barlow (2003) | CHARACTERIZATION of a novel simian immunodeficiency virus (SIVmonNG1) genome sequence from a mona monkey (Cercopithecus mona) | J. Virol. 77 (12), 6879-6888 (2003) | 3e-92 | 2 1PR 1RT 2IN |
2 1RT 2IN |
100 | HIVDB |
| Barnett (1993) | DISTINGUISHING features of an infectious molecular clone of the highly divergent and noncytopathic human immunodeficiency virus type 2 UC1 strain | J. Virol. 67 (2), 1006-1014 (1993) | 0 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Barnett (1996) | DIRECT Submission | Submitted (11-OCT-1995) Barton Bryant, HIV Database, Los Ala | 2e-98 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Barreto (2006) | Trends in antiretroviral drug resistance and clade distributions among HIV-1--infected blood donors in Sao Paulo, Brazil. | JAIDS | 1e-142 | 6 6PR 6RT |
6 4PR 3RT |
100 | HIVDB |
| Barrie (1996) | NATURAL variation in HIV-1 protease, Gag p7 and p6, and protease cleavage sites within gag/pol polyproteins: amino acid substitutions in the absence of protease inhibitors in mothers and children infected by human immunodeficiency virus type 1 | Virology 219 (2), 407-416 (1996) | 1e-126 | |
37 37PR |
0 | Case report(s) / study subset |
| Bartolo (2007) | HIV-1 genetic diversity and transmitted drug resistance in health care settings in Maputo, Mozambique. | JAIDS | 0 | 112 36PR 76RT |
112 36PR 76RT |
100 | HIVDB |
| Bartolo (2007) | Antiretroviral drug resistance surveillance among treatment-naive human immunodeficiency virus type 1-infected individuals in Angola: evidence for low level of transmitted drug resistance. | AAC | 1e-170 | 140 19PR 121RT |
140 19PR 121RT |
100 | HIVDB |
| Bartolo (2008) | HIV-1 genetic diversity and transmitted drug resistance in health care settings in Maputo, Mozambique. | JAIDS | 1e-165 | 1 1PR 1RT |
1 1RT |
100 | HIVDB |
| Bartolo (2010) | Origin and epidemiological history of HIV-1 CRF14_BG. | PLoS One | 0 | 3 3PR 3RT 3IN |
3 3RT 3IN |
100 | HIVDB |
| Bartolo (2009) | Highly divergent subtypes and new recombinant forms prevail in the HIV/AIDS epidemic in Angola: new insights into the origins of the AIDS pandemic | Infect. Genet. Evol. 9 (4), 672-682 (2009) | 3e-49 | 9 9PR |
9 9PR |
100 | HIVDB |
| Baryshev (2011) | Genetic characterisation of HIV-1 strains recombinant form AG circulating in Siberia, Russia | Zh Mikrobiol Epidemiol Immunobiol | 0 | |
17 1PR 17RT 17IN |
0 | Pending |
| Baxter (2006) | GENOTYPIC changes in human immunodeficiency virus type 1 protease associated with reduced susceptibility and virologic response to the protease inhibitor tipranavir | J. Virol. 80 (21), 10794-10801 (2006) | 0 | 1531 1531PR 1394RT |
1534 394PR 1397RT |
99 | HIVDB |
| Beck (2007) | OPTIMIZATION of the Oligonucleotide Ligation Assay (OLA), a Rapid and Inexpensive Test for Detection of HIV-1 Drug-Resistance Mutations, for Non-B Subtypes | Unpublished | 8e-53 | |
16 16PR |
0 | Case report(s) / study subset |
| Becker (1995) | MOLECULAR and phylogenetic characterisation of a Guinea-Bissau-derived human immunodeficiency virus type 2 isolate | Unpublished | 1e-100 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Becker-Pergola (2000) | ANALYSIS of HIV type 1 protease and reverse transcriptase in antiretroviral drug-naive Ugandan adults | AIDS Res. Hum. Retroviruses 16 (8), 807-813 (2000) | 1e-115 | 54 27PR 27RT |
54 27PR 27RT |
100 | HIVDB |
| Beer (1999) | SIMIAN immunodeficiency virus (SIV) from sun-tailed monkeys (Cercopithecus solatus): evidence for host-dependent evolution of SIV within the C. lhoesti superspecies | J. Virol. 73 (9), 7734-7744 (1999) | 4e-97 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Beer (2000) | PATTERNS of genomic sequence diversity among their simian immunodeficiency viruses suggest that L'Hoest monkeys (Cercopithecus lhoesti) are a natural lentivirus reservoir | J. Virol. 74 (8), 3892-3898 (2000) | 3e-99 | 3 3PR 3RT 3IN |
3 2PR 3RT 3IN |
100 | HIVDB |
| Beer (2001) | CHARACTERIZATION of novel simian immunodeficiency viruses from red-capped mangabeys from Nigeria (SIVrcmNG409 and -NG411) | J. Virol. 75 (24), 12014-12027 (2001) | 1e-133 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Beerenwinkel (2002) | DIVERSITY and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype | Proc. Natl. Acad. Sci. U.S.A. 99 (12), 8271-8276 (2002) | 1e-126 | |
489 466PR 467RT |
0 | Sequence Quality |
| Bellocchi (2009) | Subtype Analysis and Mutations to Antiviral Drugs in HIV-1-Infected Patients From Mozambique Before Initiation of Antiretroviral Therapy: Results From the DREAM Programme | J Med Virol (2005) | 1e-177 | 59 59PR 59RT |
59 59RT |
100 | HIVDB |
| Benn (1993) | Genomic heterogeneity of AIDS retroviral isolates from North America and Zaire | Science | 1e-166 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| BENVENISTE (1988) | Inoculation of baboons and macaques with simian immunodeficiency virus/Mne, a primate lentivirus closely related to human immunodeficiency virus type 2. | Unpublished (1990) | 6e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Bermudez-Aza (2011) | Antiretroviral resistance in MSM in Brazil | Unpublished | 1e-153 | |
142 100PR 90RT |
0 | Pending |
| Bernardin (2003) | PRIMARY Infection of a Male Plasma Donor with Divergent HIV Variants from the Same Source Followed by Rapid Fluctuations in Their Relative Frequency and Viral Recombination | AIDS Res. Hum. Retroviruses 19 (11), 1009-1015 (2003) | 0 | |
3 3PR 3RT 3IN |
0 | Case report(s) / study subset |
| Bernardin (2004) | HUMAN immunodeficiency virus mutations during the first month of infection are preferentially found in known cytotoxic T-lymphocyte epitopes | J. Virol. 79 (17), 11523-11528 (2005) | 0 | 18 18PR 18RT 18IN |
18 18PR 18RT 18IN |
100 | HIVDB |
| Bernardin (2006) | DIRECT Submission | Submitted (12-DEC-2005) Molecular Virology, Blood Systems Re | 0 | |
13 13PR 13RT 13IN |
0 | Case report(s) / study subset |
| Bessong (2004) | CHARACTERIZATION of Human Immunodeficiency Virus Type 1 from a Previously Unexplored Region of South Africa with a High HIV Prevalence | AIDS Res. Hum. Retroviruses 21 (1), 103-109 (2005) | 1e-168 | 26 13PR 13RT |
26 13PR 13RT |
100 | HIVDB |
| Bessong (2005) | RESISTANCE mutational analysis of HIV type 1 subtype C among rural South African drug-naive patients prior to large-scale availability of antiretrovirals | AIDS Res. Hum. Retroviruses 22 (12), 1306-1312 (2006) | 1e-177 | 70 35PR 35RT |
70 35PR 35RT |
100 | HIVDB |
| Bessong (2010) | Analysis of pol integrase gene sequences of HIV-1 infected treatment naive individuals in the Limpopo province of South Africa | Unpublished | 1e-164 | |
89 89IN |
0 | Pending |
| Betancor (2012) | Clinical, virological and biochemical evidence supporting the association of HIV-1 reverse transcriptase polymorphism R284K and thymidine analogue resistance mutations M41L, L210W and T215Y in patients failing tenofovir/emtricitabine therapy | Retrovirology 9 (1), 68 (2012) | 0 | |
216 128PR 216RT |
0 | Pending |
| Bibollet-Ruche (1996) | GENETIC diversity of simian immunodeficiency viruses from West African green monkeys: evidence of multiple genotypes within populations from the same geographical locale | J. Virol. 71 (1), 307-313 (1997) | 1e-30 | |
10 10IN |
0 | Gene fragment(s) |
| Bibollet-Ruche (2004) | NEW simian immunodeficiency virus infecting De Brazza's monkeys (Cercopithecus neglectus): evidence for a cercopithecus monkey virus clade | J. Virol. 78 (14), 7748-7762 (2004) | 0 | 4 4PR 4RT 4IN |
11 4PR 6RT 11IN |
36 | HIVDB |
| Bibollet-Ruche (2005) | COMPLETE genome analysis of one of the earliest SIVcpzPtt strains from Gabon (SIVcpzGAB2) | AIDS Res. Hum. Retroviruses 20 (12), 1377-1381 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Bibollet-Ruche (2005) | GENETIC characterization of accessory genes from human immunodeficiency viruses type 1 group O | Unpublished | 3e-08 | |
14 14IN |
0 | Gene fragment(s) |
| Bibollet-Ruche (2012) | Efficient SIVcpz replication in human lymphoid tissue requires viral matrix protein adaptation | J. Clin. Invest. 122 (5), 1644-1652 (2012) | 0 | |
3 3RT 3IN |
0 | Laboratory/experimental isolate |
| Biesinger (2007) | CHANGES in simian immunodeficiency virus reverse transcriptase alleles that appear during infection of macaques enhance infectivity and replication in CD4(+) T cells | Virology 370 (1), 184-193 (2008) | 0 | |
8 8RT |
0 | Case report(s) / study subset |
| Bila (2012) | Evolution of primary HIV drug resistance in a subtype C dominated epidemic in Mozambique | Unpublished | 0 | |
112 4PR 112RT |
0 | Pending |
| Binverted question markelec (2000) | HIGH levels of drug-resistant human immunodeficiency virus variants in patients exhibiting increasing CD4+ T cell counts despite virologic failure of protease inhibitor-containing antiretroviral combination therapy | J. Infect. Dis. 181 (5), 1808-1812 (2000) | 1e-128 | 100 100PR |
100 100PR |
100 | HIVDB |
| Blankson (2007) | ISOLATION and Characterization of Replication-Competent HIV-1 from a Subset of Elite Suppressors | J. Virol. 81 (5), 2508-2518 (2007) | 0 | |
6 4PR 6RT 6IN |
0 | Case report(s) / study subset |
| Blankson (2009) | HIV-1 Evolution Following Transmission to an HLA-B*5801 Positive Subject | J Infect Dis. 2009 Dec 15;200(12):1820-4. | 0 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Bleiber (2001) | INDIVIDUAL contributions of mutant protease and reverse transcriptase to viral infectivity, replication, and protein maturation of antiretroviral drug-resistant human immunodeficiency virus type 1 | J. Virol. 75 (7), 3291-3300 (2001) | 1e-112 | |
21 15PR 15RT |
0 | Case report(s) / study subset |
| Blick (2006) | THE Probable Source of Both the Primary Multidrug-Resistant (MDR) HIV-1 Strain Found in a Patient with Rapid Progression to AIDS and a Second Recombinant MDR Strain Found in a Chronically HIV-1-Infected Patient | J. Infect. Dis. 195 (9), 1250-1259 (2007) | 1e-163 | |
13 1PR 13RT |
0 | Case report(s) / study subset |
| Bodelle (2004) | IDENTIFICATION and Genomic Sequence of an HIV Type 1 Group N Isolate from Cameroon | AIDS Res. Hum. Retroviruses 20 (8), 902-908 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Boeri (2003) | EVOLUTIONARY characteristics of HIV-1 variants resistant to protease inhibitors in the absence of drug-selective pressure | AIDS Res. Hum. Retroviruses (2003) In press | 0 | |
18 18PR 18RT |
0 | Case report(s) / study subset |
| Bogh (2001) | INVESTIGATING association between baseline HIV-1 genotypic resistance and virological response among protease in-hibitor-naive patients treated with HAART | Unpublished | 1e-133 | |
180 112PR 68RT |
0 | Unpublished |
| Bolcic (2011) | Diversity of HCV 1a form HIV-coinfected patients in Argentina | Unpublished | 9e-52 | |
4 4PR |
0 | Case report(s) / study subset |
| Bolivar (2009) | The Challenge of HIV-1 Genetic Diversity: Discordant CD4+ T-Cell Count and Viral Load in an Untreated Patient Infected With a Subtype F Strain | J. Acquir. Immune Defic. Syndr. 52 (5), 659-661 (2 | 1e-161 | |
1 1IN |
0 | Case report(s) / study subset |
| Bonhoeffer (2008) | Evidence for positive epistasis in HIV-1 | Science 306 (5701), 1547-1550 (2004) | 1e-175 | 8687 8687PR 8687RT |
8687 5633PR 7808RT |
100 | HIVDB |
| Bontell (2011) | Transmitted drug resistance and phylogenetic analysis of HIV CRF01_AE in Northern Vietnam | Infect. Genet. Evol. (2011) In press | 2e-50 | 33 33PR 33RT |
33 33PR |
100 | HIVDB |
| Bonura (2010) | Transmission of drug-resistant HIV type 1 strains in HAART-naive patients: a 5-year retrospective study in Sicily, Italy. | ARHR | 0 | 109 109PR 109RT |
109 41PR 109RT |
100 | HIVDB |
| Bouchard (2004) | HIV Type 1 Drug Resistance among Naive Patients from Venezuela | AIDS Res. Hum. Retroviruses 23 (3), 482-485 (2007) | 1e-140 | 37 17PR 20RT |
37 17PR 20RT |
100 | HIVDB |
| Bouchonnet (2012) | Quantification of the effects on viral DNA synthesis of reverse transcriptase mutations conferring human immunodeficiency virus type 1 resistance to nucleoside analogues | J. Virol. 79 (2), 812-822 (2005) | 0 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Bourara (2007) | TARGET cell APOBEC3C can induce limited G-to-A mutation in HIV-1 | PLoS Pathog. 3 (10), 1477-1485 (2007) | 4e-52 | |
2 2PR |
0 | Case report(s) / study subset |
| Bouzeghoub (2005) | HIGH Diversity of HIV Type 1 in Algeria | AIDS Res. Hum. Retroviruses 22 (4), 367-372 (2006) | 1e-149 | 248 132PR 116RT |
248 132PR 116RT |
100 | HIVDB |
| Bouzeghoub (2008) | FIRST Observation of HIV Type 1 Drug Resistance Mutations in Algeria | AIDS Res. Hum. Retroviruses 24 (11), 1467-1473 (2008) | 1e-148 | |
37 16PR 21RT |
0 | Pending |
| Brachtel (2002) | DEMONSTRATION of de Novo HIV Type 1 Production by Detection of Multiply Spliced and Unspliced HIV Type 1 RNA in Paraffin-Embedded Tonsils | AIDS Res. Hum. Retroviruses 18 (11), 785-790 (2002) | 1e-62 | |
43 43PR |
0 | Case report(s) / study subset |
| Bradshaw (2007) | NOVEL Drug Resistance Pattern Associated with the Mutations K70G and M184V in Human Immunodeficiency Virus Type 1 Reverse Transcriptase | Antimicrob. Agents Chemother. 51 (12), 4489-4491 (2007) | 0 | 9 4PR 9RT |
9 9RT |
100 | HIVDB |
| Brandin (2003) | POL Gene Sequence Variation in Swedish HIV-2 Patients Failing Antiretroviral Therapy | AIDS Res. Hum. Retroviruses 19 (7), 543-550 (2003) | 3e-97 | 30 30PR 30RT |
30 30PR 30RT |
100 | HIVDB |
| Brann (2006) | FUNCTIONAL Correlation between a Novel Amino Acid Insertion at Codon 19 in the Protease of Human Immunodeficiency Virus Type 1 and Polymorphism in the p1/p6 Gag Cleavage Site in Drug Resistance and Replication Fitness | J. Virol. 80 (12), 6136-6145 (2006) | 2e-49 | |
1 1PR |
0 | Case report(s) / study subset |
| Brehm (2011) | Failure of initial therapy with two nucleosides and efavirenz is not associated with early emergence of mutations in the C-terminus of HIV-1 reverse transcriptase | J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2 | 0 | 105 105RT |
106 106RT |
99 | HIVDB |
| Brehm (2012) | Frequent Emergence of N348I in HIV-1 Subtype C Reverse Transcriptase with Failure of Initial Therapy Reduces Susceptibility to Reverse-Transcriptase Inhibitors | Clin. Infect. Dis. (2012) In press | 0 | 138 138RT |
138 138RT |
100 | HIVDB |
| Brennan (2009) | Identification of human immunodeficiency virus type 1 non-B subtypes and antiretroviral drug-resistant strains in United States blood donors. | Transfusion | 0 | 65 62PR 62RT 3IN |
65 43PR 62RT 3IN |
100 | HIVDB |
| Brennan (1997) | GENETIC variation in human immunodeficiency virus type 2: identification of a unique variant from human plasma | AIDS Res. Hum. Retroviruses 13 (5), 401-404 (1997) | 0.27 | 1 1PR 1RT 1IN |
1 1RT |
100 | HIVDB |
| Brennan (2007) | HIV-1 Strains Identified in Brazilian Blood Donors: Significant Prevalence of B/F1 Recombinants | AIDS Res. Hum. Retroviruses 23 (11), 1434-1441 (2007) | 1e-167 | 82 82IN |
85 85IN |
96 | HIVDB |
| Brennan (2009) | The prevalence of diverse HIV-1 strains was stable in Cameroonian blood donors from 1996 to 2004 | J. Acquir. Immune Defic. Syndr. 49 (4), 432-439 (2 | 1e-166 | 572 572IN |
573 573IN |
99 | HIVDB |
| Brennan (2011) | Expanded Evaluation of Blood Donors in the United States for HIV-1 Non-B Subtypes and Antiretroviral Drug Resistant Strains: 2005-2007 | Unpublished | 0 | 25 25PR 25RT |
25 8PR 25RT |
100 | HIVDB |
| Brennan (2011) | Expanded evaluation of blood donors in the United States for human immunodeficiency virus type 1 non-B subtypes and antiretroviral drug-resistant strains: 2005 through 2007 | Transfusion 50 (12), 2707-2712 (2010) | 0 | 178 178PR 178RT |
178 171PR 178RT |
100 | HIVDB |
| Brenner (2006) | HIV-1 subtype C viruses rapidly develop K65R resistance to tenofovir in cell culture | AIDS 20 (9), F9-F13 (2006) | 0 | |
5 3PR 5RT |
0 | Laboratory/experimental isolate |
| Brenner (2006) | HIGH Rates of Forward Transmission Events after Acute/Early HIV-1 Infection | J. Infect. Dis. 195 (7), 951-959 (2007) | 0 | |
24 22PR 12RT |
0 | Case report(s) / study subset |
| Brenner (2010) | HIV-1 Integrase Genotypic Analysis: Implications in the Study of HIV-1 Drug Resistance and Subtype Diversification | Antimicrob. Agents Chemother. (2010) In press | 0 | |
8 7RT 8IN |
0 | Pending |
| Brenner (2011) | Subtype diversity associated with the development of HIV-1 resistance to integrase inhibitors | J. Med. Virol. 83 (5), 751-759 (2011) | 1e-167 | |
149 149IN |
0 | Pending |
| Brenner (2011) | Spread of HIV-1 Drug-Resistant Sub-epidemics | Unpublished | 0 | |
1 1RT |
0 | Unpublished |
| Brenner (2011) | Transmission Clustering Drives the Onward Spread of the HIV Epidemic Among Men Who Have Sex With Men in Quebec | J. Infect. Dis. 204 (7), 1115-1119 (2011) | 0 | |
172 148PR 130RT |
0 | Case report(s) / study subset |
| Brigido (2005) | SHORT Communication: Molecular Characteristics of HIV Type 1 Circulating in Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 21 (7), 673-682 (2005) | 0 | |
174 68PR 106RT |
0 | Pending |
| Brigido (2008) | HIV type 1 subtype C and CB Pol recombinants prevail at the cities with the highest AIDS prevalence rate in Brazil | AIDS Res. Hum. Retroviruses 23 (12), 1579-1586 (2007) | 0 | 149 103PR 99RT |
149 65PR 97RT |
100 | HIVDB |
| Brigido (2010) | Southern Brazil HIV Type 1 C Expansion into the State of Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 27 (3), 339-344 (2011) | 0 | 187 187PR 179RT |
248 193PR 69RT 15IN |
75 | HIVDB |
| Brindeiro (1999) | SEQUENCE diversity of the reverse transcriptase of human immunodeficiency virus type-1 from Brazilian untreated individuals | Antimicrob. Agents Chemother. (1999) In press | 2e-91 | 18 18RT |
18 18RT |
100 | HIVDB |
| Brindeiro (2003) | BRAZILIAN Network for HIV Drug Resistance Surveillance (HIV-BResNet): a survey of chronically infected individuals | AIDS 17 (7), 1063-1069 (2003) | 1e-145 | 350 199PR 191RT |
357 199PR 199RT |
98 | HIVDB |
| Briones (2000) | DYNAMICS of dominance of a dipeptide insertion in reverse transcriptase of HIV-1 from patients subjected to prolonged therapy | Virus Res. 66 (1), 13-26 (2000) | 1e-128 | |
186 180PR 186RT |
0 | Evolution/quasispecies study |
| Briones (2003) | MEMORY in retroviral quasispecies: experimental evidence and theoretical model for human immunodeficiency virus | J. Mol. Biol. 331 (1), 213-229 (2003) | 1e-126 | |
15 15PR 15RT |
0 | Evolution/quasispecies study |
| Brockman (2012) | Uncommon Pathways of Immune Escape Attenuate HIV-1 integrase Replication Capacity | J. Virol. 86 (12), 6913-6923 (2012) | 1e-167 | |
88 88IN |
0 | Pending |
| Brown (2009) | Phylogenetic reconstruction of transmission events from individuals with acute HIV infection: toward more-rigorous epidemiological definitions | J. Infect. Dis. 199 (3), 427-431 (2009) | 1e-172 | 160 160PR 160RT |
160 133PR 77RT |
100 | HIVDB |
| Brown (1999) | SEQUENCE clusters in human immunodeficiency virus type 1 reverse transcriptase are associated with subsequent virological response to antiretroviral therapy | J. Infect. Dis. 180 (4), 1043-1049 (1999) | 1e-130 | |
55 55PR 55RT |
0 | DNAChip |
| Brown (2005) | BIOLOGIC and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines | J. Virol. 79 (10), 6089-6101 (2005) | 0 | 21 21PR 21RT 21IN |
21 21PR 21RT 21IN |
100 | HIVDB |
| Brumme (2007) | EVIDENCE of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1 | PLoS Pathog. 3 (7), E94 (2007) | 0 | 811 811PR 594RT |
811 773PR 594RT |
100 | HIVDB |
| Brumme (2009) | HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins | PLoS ONE 4 (8), E6687 (2009) | 0 | 1279 683PR 677RT 975IN |
1285 415PR 691RT 1129IN |
99 | HIVDB |
| Bruselles (2009) | Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV BF recombinant associated with a fatal primary infection | AIDS Res Hum Retroviruses. 2009 Sep;25(9):937-42. | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Buckheit (2012) | Long term control of viral replication in a group O, Human immunodeficiency virus type 1 infected individual | Unpublished | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Buckheit (2012) | Host Factors Dictate Control of Viral Replication in two HIV-1 Controller/Chronic Progressor Transmission Pairs | Nat Commun (2012) In press | 0 | |
4 4PR 4RT 4IN |
0 | Case report(s) / study subset |
| Buckton (2008) | DEVELOPMENT and optimization of an internally controlled dried blood spot assay for surveillance of human immunodeficiency virus type-1 drug resistance | J. Antimicrob. Chemother. 62 (6), 1191-1198 (2008) | 0 | |
17 17RT |
0 | Case report(s) / study subset |
| Bulgheroni (2001) | UNUSUAL codon 69 insertions: influence on human immunodeficiency virus type 1 reverse transcriptase drug susceptibility | J. Clin. Virol. 29 (1), 27-32 (2004) | 4e-77 | |
3 3RT |
0 | Case report(s) / study subset |
| Buonaguro (2006) | SCREENING of HIV-1 isolates by reverse heteroduplex mobility assay and identification of non-B subtypes in Italy | J. Acquir. Immune Defic. Syndr. 37 (2), 1295-1306 (2004) | 0 | |
3 3RT 3IN |
0 | Case report(s) / study subset |
| Burda (2009) | HIV-1 reverse transcriptase drug-resistance mutations in chronically infected individuals receiving or naive to HAART in Cameroon. | J Med Virol | 0 | 28 28RT |
28 28RT |
100 | HIVDB |
| Burda (2005) | HIV-1 CRF09_cpx circulates in the North West Province of Cameroon where CRF02_AG infections predominate and recombinant strains are common | AIDS Res. Hum. Retroviruses 20 (12), 1358-1363 (2004) | 2e-50 | |
17 17PR |
0 | Sequence quality |
| Burda (2010) | HIV-1 reverse transcriptase drug-resistance mutations in chronically infected individuals receiving or naive to HAART in Cameroon | J. Med. Virol. 82 (2), 187-196 (2010) | 1e-156 | 1 1RT |
1 1RT |
100 | HIVDB |
| Bure (2011) | Genetic analysis of pol gene of HIV-1 in Indian children | Unpublished | 9e-50 | |
1 1PR |
0 | Unpublished |
| Burkala (2005) | COMPARTMENTALIZATION of HIV-1 in the central nervous system: role of the choroid plexus | AIDS 19 (7), 675-684 (2005) | 1e-152 | |
140 123PR 140RT |
0 | Evolution/quasispecies study |
| Burns (2005) | SEQUENCE variability of the integrase protein from a diverse collection of HIV type 1 isolates representing several subtypes | AIDS Res. Hum. Retroviruses 18 (14), 1031-1041 (2002) | 1e-159 | 21 21IN |
21 21IN |
100 | HIVDB |
| Bussmann (2005) | HIV-1 subtype C drug-resistance background among ARV-naive adults in Botswana. | Antivir Chem Chemother | 0 | 71 71PR 71RT |
71 64PR 71RT |
100 | HIVDB |
| Buzon (2008) | Raltegravir susceptibility and fitness progression of HIV type-1 integrase in patients on long-term antiretroviral therapy. | Antivir Ther | 1e-167 | 123 123IN |
135 135IN |
91 | HIVDB |
| Buzon (2011) | Combined antiretroviral therapy and immune pressure lead to in vivo HIV-1 recombination with ancestral viral genomes | J. Acquir. Immune Defic. Syndr. (2011) In press | 4e-50 | |
9 9PR |
0 | Evolution/quasispecies study |
| Bychenko (2009) | Isolation and characterization of new HIV-1 subtype A1 strain from Russia, envelope proteins variability analysis | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Byrn (2006) | HIV-1 in semen: an isolated virus reservoir | Lancet 350 (9085), 1141 (1997) | 4e-52 | |
35 35PR |
0 | Case report(s) / study subset |
| Cabana (1999) | EMERGENCE and genetic evolution of HIV-1 variants with mutations conferring resistance to multiple reverse transcriptase and protease inhibitors | J. Med. Virol. 59 (4), 480-490 (1999) | 1e-125 | 92 54PR 38RT |
92 54PR 38RT |
100 | HIVDB |
| Calazans (2003) | LOW Accumulation of L90M in Protease from Subtype F HIV-1 with Resistance to Protease Inhibitors Is Caused by the L89M Polymorphism | J. Infect. Dis. 191 (11), 1961-1970 (2005) | 1e-126 | 51 51PR 51RT |
52 52PR 51RT |
98 | HIVDB |
| Cali (2004) | EVIDENCE for host-driven selection of the HIV type 1 vpr gene in vivo during HIV disease progression in a transfusion-acquired cohort | AIDS Res. Hum. Retroviruses 21 (8), 728-733 (2005) | 0 | |
15 15PR 15RT 15IN |
0 | Case report(s) / study subset |
| Calugi (2006) | ENTIRE Genome of a Strain of Human Immunodeficiency Virus Type 1 with a Deletion of nef That Was Recovered 20 Years after Primary Infection: Large Pool of Proviruses with Deletions of env | J. Virol. 80 (23), 11892-11896 (2006) | 0 | |
1 1RT 1IN |
0 | Sequence quality |
| Calvez (2002) | IMPACT of stavudine phenotype and thymidine analogues mutations on viral response to stavudine plus lamivudine in ALTIS 2 ANRS trial | Antivir. Ther. (Lond.) 7 (3), 211-218 (2002) | 2e-94 | |
26 26RT |
0 | ARV Rx and/or other data are N/A |
| Candotti (1999) | AIDS in an HIV-seronegative Ghanaian woman with intersubtype A/G recombinant HIV-1 infection | J. Med. Virol. 62 (1), 1-8 (2000) | 1e-165 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Canducci (2008) | Dynamic patterns of human immunodeficiency virus type 1 integrase gene evolution in patients failing raltegravir-based salvage therapies. | AIDS | 1e-154 | 37 37IN |
37 37IN |
100 | HIVDB |
| Canducci (2011) | Cross-resistance profile of the novel integrase inhibitor Dolutegravir (S/GSK1349572) using clonal viral variants selected in patients failing raltegravir | J. Infect. Dis. 204 (11), 1811-1815 (2011) | 1e-167 | |
38 38IN |
0 | Pending |
| Caplinskas (2012) | Distinct HIV-1 strains in different risk groups and the absence of new infections by drug-resistant strains in Lithuania | AIDS Res. Hum. Retroviruses (2012) In press | 0 | 27 27PR 27RT |
27 9PR 27RT |
100 | HIVDB |
| Cardoso (2009) | HIV-1 pol phylogenetic diversity and antiretroviral resistance mutations in treatment naive patients from Central West Brazil | J. Clin. Virol. 46 (2), 134-139 (2009) | 1e-145 | 76 76PR 76RT |
76 76PR 8RT |
100 | HIVDB |
| Cardoso (2009) | High level of multidrug resistance mutations in HIV type 1 pol gene and resistance-associated mutations to enfuvirtide (T-20) among antiretroviral-experienced patients from central Brazil | AIDS Res. Hum. Retroviruses 25 (10), 943-950 (2009 | 1e-145 | 25 25PR 25RT |
25 25PR 1RT |
100 | HIVDB |
| Cardoso (2010) | HIV-1 primary and secondary antiretroviral drug resistance and genetic diversity among pregnant women from central Brazil | J. Med. Virol. 82 (3), 351-357 (2010) | 1e-144 | |
62 62PR 4RT |
0 | Pending |
| Cardoso (2011) | Molecular Characteristics of HIV Type 1 Infection Among Prisoners from Central Western Brazil | AIDS Res. Hum. Retroviruses (2011) In press | 2e-52 | |
18 18PR |
0 | Pending |
| Caride (2000) | DRUG-RESISTANT reverse transcriptase genotyping and phenotyping of B and non-B subtypes (F and A) of human immunodeficiency virus type I found in Brazilian patients failing HAART | Virology 275 (1), 107-115 (2000) | 5e-89 | |
14 14RT |
0 | ARV Rx and/or other data are N/A |
| Caride (2001) | GENOTYPIC and phenotypic evidence of different drug-resistance mutation patterns between B and non-B subtype isolates of human immunodeficiency virus type 1 found in Brazilian patients failing HAART | Virus Genes 23 (2), 193-202 (2001) | 1e-123 | 14 14PR |
28 28PR |
50 | HIVDB |
| Carneiro-Proietti (1997) | DIRECT Submission | Submitted (14-NOV-1996) Lab. Virus, Dept. Microbiologia, Uni | 1e-128 | |
1 1PR |
0 | Case report(s) / study subset |
| Caron (2008) | HUMAN immunodeficiency virus type 1 seroprevalence and antiretroviral drug resistance-associated mutations in miners in Gabon, central Africa | AIDS Res. Hum. Retroviruses 24 (9), 1225-1228 (2008) | 2e-50 | 4 4PR |
4 4PR |
100 | HIVDB |
| Caron (2011) | Increasing HIV-1 Polymorphism Diversity and Resistance to Antiretroviral Drugs in Untreated Pregnant Women from Gabon, central Africa | Unpublished | 3e-52 | 3 3PR 3RT |
3 3PR |
100 | HIVDB |
| Carr (1996) | FULL-LENGTH sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand | J. Virol. 70 (9), 5935-5943 (1996) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Carr (1998) | FULL genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants | Virology 247 (1), 22-31 (1998) | 1e-164 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Carr (1999) | CHARACTERIZATION of subtype A HIV-1 from Africa by full genome sequencing | AIDS 13 (14), 1819-1826 (1999) | 1e-166 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Carr (1999) | DIRECT Submission | Submitted (07-JUL-1998) Molecular Epidemiology, Henry M. Jac | 1e-164 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Carr (2001) | THE AG Recombinant IbNG and Novel Strains of Group M HIV-1 are Common in Cameroon | Virology (2001) In press | 1e-166 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Carr (2001) | DIVERSE BF recombinants have spread widely since the introduction of HIV-1 into South America | AIDS 15 (15), F41-F47 (2001) | 1e-165 | 21 21PR 21RT 21IN |
21 21PR 21RT 21IN |
100 | HIVDB |
| Carr (2004) | OUTBREAK of a West African recombinant of HIV-1 in Tashkent, Uzbekistan | J. Acquir. Immune Defic. Syndr. 39 (5), 570-575 (2005) | 0 | 245 233PR 232RT 12IN |
246 242PR 241RT 12IN |
99 | HIVDB |
| Carr (2005) | HIV Subtype and Drug Resistance Patterns among Drug Naive Persons in Jos, Nigeria | Unpublished | 0 | 23 23PR 23RT 7IN |
23 9PR 23RT 7IN |
100 | HIVDB |
| Carr (2006) | HIGH Genetic Complexity of HIV-1 in low-prevalence, rural regions of Cameroon | Unpublished | 0 | 2 2PR 2RT 2IN |
2 1PR 2RT 2IN |
100 | HIVDB |
| Carr (2008) | HIV-1 in the Caribbean is Dominated by Subtype B | PLoS One. 2009;4(3):e4814. Epub 2009 Mar 12. | 1e-139 | 48 48PR 48RT |
62 59PR 27RT |
77 | HIVDB |
| Carr (2008) | IDENTIFICATION of CRF17_BF in Four South American Countries | Unpublished | 0 | |
6 1PR 6RT 6IN |
0 | Case report(s) / study subset |
| Carr (2008) | HIV-1 Epidemic in the Caribbean is Dominated by Subtype B | Unpublished | 0 | 15 15PR 15RT 15IN |
15 10PR 15RT 15IN |
100 | HIVDB |
| Carr (2010) | HIV-1 Recombinants with Multiple Parental Strains in Low-Prevalence, Remote Regions of Cameroon | Retrovirology. 2010 Apr 28;7:39. | 0 | 24 24PR 23RT 24IN |
24 24RT 24IN |
100 | HIVDB |
| Carrera (2010) | Identification of unusual and novel HIV type 1 spliced transcripts generated in vivo | AIDS Res. Hum. Retroviruses 26 (7), 815-820 (2010) | 0.002 | |
1 1IN |
0 | Gene fragment(s) |
| Carrion (2002) | CIRCULATING Recombinant Form CRF02_AG in South America | AIDS Res. Hum. Retroviruses 19 (4), 329-332 (2003) | 1e-163 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Carrion (2004) | DOCUMENTATION of subtype C HIV Type 1 strains in Argentina, Paraguay, and Uruguay | AIDS Res. Hum. Retroviruses 20 (9), 1022-1025 (2004) | 0 | 2 2PR 2RT 2IN |
7 7PR 7RT 2IN |
28 | HIVDB |
| Carrion (2009) | Molecular characterization of the human immunodeficiency virus type 1 among children in Lima, Peru | AIDS Res. Hum. Retroviruses (2009) In press | 1e-173 | |
2 2RT |
0 | Pending |
| Carvalho (2010) | Moderate prevalence of transmitted drug resistance and interiorization of HIV type 1 subtype C in the inland north state of Tocantins, Brazil. | ARHR | 1e-144 | 30 30PR 30RT |
31 31PR 1RT |
96 | HIVDB |
| Carvalho (2010) | Secondary Drug Resistance And HIV-1 Phylogenetic Diversity In North Brazil, Tocantins State | Unpublished | 4e-51 | |
5 5PR |
0 | Unpublished |
| Carvalho (2011) | Moderate Prevalence of Transmitted Drug Resistance and Interiorization of HIV Type 1 Subtype C in the Inland North State of Tocantins, Brazil | AIDS Res. Hum. Retroviruses 27 (10), 1081-1087 (20 | 3e-52 | 10 10PR 10RT |
10 10PR |
100 | HIVDB |
| Casado (2003) | NEAR Full-Length Genome Characterization of an HIV Type 1 CRF05_DF Virus from Spain | AIDS Res. Hum. Retroviruses 19 (8), 719-725 (2003) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Casado (2005) | DIRECT Submission | Submitted (18-JAN-2005) Patogenia Viral, Instituto de Salud | 1e-126 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Casado (2007) | IDENTIFICATION of a novel HIV-1 circulating ADG intersubtype recombinant form (CRF19_cpx) in Cuba | J. Acquir. Immune Defic. Syndr. 40 (5), 532-537 (2005) | 0 | 2 2PR 2RT 2IN |
2 1PR 2RT 2IN |
100 | HIVDB |
| Castelbranco (2010) | Frequency of Primary Resistance to Antiretroviral Drugs and Genetic Variability of HIV-1 Among Infected Pregnant Women Recently Diagnosed in Luanda-Angola | AIDS Res. Hum. Retroviruses 26 (12), 1313-1316 (20 | 2e-49 | 2 2PR 2RT |
2 2PR |
100 | HIVDB |
| Castillo (2009) | Surveillance of HIV Type 1 Drug Resistance among Naive Patients from Venezuela | AIDS Res. Hum. Retroviruses (2009) In press | 1e-150 | 89 54PR 35RT |
89 54PR 35RT |
100 | HIVDB |
| Castillo (2009) | Surveillance of HIV Type 1 Drug Resistance among Naive Patients from Venezuela | AIDS Res. Hum. Retroviruses (2009) In press | 3e-46 | 1 1PR |
1 1PR |
100 | HIVDB |
| Castro (2002) | MOLECULAR epidemiology of HIV-1 in Venezuela: high prevalence of HIV-1 subtype B and identification of a B/F recombinant infection | J. Acquir. Immune Defic. Syndr. 32 (3), 338-344 (2003) | 7e-77 | |
2 1PR 1RT |
0 | Case report(s) / study subset |
| Castro (2004) | BODY Compartments Follow-up & HIV-1 Mosaic Genome Definition. E7109254 | (in) EXTENDED ABSTRACT BOOK, XV INTERNATIONAL AIDS CONFERENC | 1e-135 | |
4 4RT |
0 | Case report(s) / study subset |
| Castro (2004) | RESISTANCE mutations and molecular characterization of HIV-1 isolates from Venezuelan patients with virological failure | Unpublished | 1e-136 | |
41 20PR 21RT |
0 | Pending |
| Castro (2009) | HIV-1 transmission network of 103N resistance mutation in Southwest Switzerland | AIDS Res Hum Retroviruses. 2010 Sep 23. [Epub ahead of print | 0 | |
19 14PR 10RT |
0 | Case report(s) / study subset |
| Caumont (2001) | Sequence analysis of env C2/V3, gag p17/p24, and pol protease regions of 25 HIV type 1 isolates from Ho Chi Minh city, Vietnam. | ARHR | 9e-98 | 26 24PR 2RT |
27 25PR 2RT |
96 | HIVDB |
| Ceccherini-Silberstein (2005) | IDENTIFICATION of the minimal conserved structure of HIV-1 protease in the presence and absence of drug pressure | AIDS 18 (12), F11-F19 (2004) | 0 | |
477 242PR 477RT |
0 | Pending |
| Ceccherini-Silberstein (2006) | HIGH sequence conservation of human immunodeficiency virus type 1 reverse transcriptase under drug pressure despite the continuous appearance of mutations | J. Virol. 79 (16), 10718-10729 (2005) | 0 | |
178 123PR 178RT |
0 | Pending |
| Ceccherini-Silberstein (2007) | IMPACT of HIV-1 Reverse Transcriptase Polymorphism F214L on Virological Response to Thymidine Analogue-Based Regimens in Antiretroviral Therapy (ART)-Naive and ART-Experienced Patients | J. Infect. Dis. 196 (8), 1180-1190 (2007) | 0 | |
275 255PR 88RT |
0 | Pending |
| Ceccherini-Silberstein (2007) | CHARACTERIZATION and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of resistance to nonnucleoside inhibitors | J. Virol. 81 (20), 11507-11519 (2007) | 0 | |
75 44PR 75RT |
0 | ARV Rx and/or other data are N/A |
| Ceccherini-Silberstein (2007) | Impact of HIV-1 reverse transcriptase polymorphism F214L on virological response to thymidine analogue-based regimens in antiretroviral therapy (ART)-naive and ART-experienced patients | J. Infect. Dis. 196 (8), 1180-1190 (2007) | 2e-48 | |
9 9PR |
0 | Pending |
| Ceccherini-Silberstein (2010) | Secondary Integrase Resistance Mutations Found in HIV-1 Minority Quasispecies in Integrase Therapy-Naive Patients Have Little or No Effect on Susceptibility to Integrase Inhibitors | Antimicrob. Agents Chemother. 54 (9), 3938-3948 (2 | 0 | |
457 429RT 457IN |
0 | Evolution/quasispecies study |
| Cenci (1997) | SELECTED nucleotide sequence of the pol gene of the monocytotropic strain HIV type 1 BaL | AIDS Res. Hum. Retroviruses 13 (7), 629-632 (1997) | 5e-49 | |
1 1RT |
0 | Case report(s) / study subset |
| Cenci (2003) | LOW Intra-Host Diversity in HIV-1 Protease Gene in Untreated Primary Infection: a Crucial Role for Purifying Selection | Unpublished | 1e-126 | |
67 67PR |
0 | Pending |
| Cenci (2004) | HIV-1 pol genotype divergence in the plasma and cerebrospinal fluid (CSF) of untreated patients in acute and chronic infection | Unpublished | 1e-108 | |
58 44PR 14RT |
0 | Unpublished |
| Chaix (2003) | Stable prevalence of genotypic drug resistance mutations but increase in non-B virus among patients with primary HIV-1 infection in France. | AIDS | 1e-116 | 244 244RT |
244 244RT |
100 | HIVDB |
| Chakrabarti (1999) | SEQUENCE of simian immunodeficiency virus from macaque and its relationship to other human and simian retroviruses | Nature 328 (6130), 543-547 (1987) | 1e-98 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Chakrabarti (2011) | HIV-1 recombinants among Maipur IDUs | Unpublished | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Chakraborty (2003) | FAILURE to detect human immunodeficiency virus type 1 superinfection in 28 HIV-seroconcordant individuals with high risk of reexposure to the virus | AIDS Res. Hum. Retroviruses 20 (9), 1026-1031 (2004) | 0 | |
162 81PR 81RT |
0 | Evolution/quasispecies study |
| Chakraborty (2003) | CAN HIV-1 superinfection compromise antiretroviral therapy? | AIDS 18 (1), 132-134 (2004) | 2e-87 | |
8 8RT |
0 | Case report(s) / study subset |
| Chaloin (2004) | ANTIVIRAL activity of reverse trancriptase inhibitors with different HIV strains and isolates | Unpublished | 0 | |
14 14RT 8IN |
0 | ARV Rx and/or other data are N/A |
| Chamberland (2011) | Transmission of HIV-1 drug resistance in Benin could jeopardise future treatment options. | Sex Transm Infect | 0 | 127 127PR 127RT |
127 6PR 127RT |
100 | HIVDB |
| Chang (2008) | Trends of antiretroviral drug resistance in treatment-naive patients with human immunodeficiency virus type 1 infection in Taiwan. | J Antimicrob Chemother | 5e-49 | 3 3PR 3RT |
3 3PR |
100 | HIVDB |
| Chang (2006) | MOLECULAR Epidemiology of HIV Type 1 Subtypes in Taiwan: Outbreak of HIV Type 1 CRF07)BC Infection in Intravenous Drug Users | AIDS Res. Hum. Retroviruses 22 (11), 1055-1066 (2006) | 1e-145 | 152 152PR 152RT |
152 128PR 146RT |
100 | HIVDB |
| Chang (2000) | DIFFERENTIAL stability of the mRNA secondary structures in the frameshift site of various HIV type 1 viruses | AIDS Res. Hum. Retroviruses 15 (17), 1591-1596 (1999) | 1e-163 | |
5 5PR 5RT 5IN |
0 | Case report(s) / study subset |
| Chang (2000) | SEQUENCE features downstream of the primer-binding site of HIV type 1 subtype E shared by subtype G and a subset of subtype A | AIDS Res. Hum. Retroviruses 15 (18), 1703-1706 (1999) | 1e-163 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Chantratita (1999) | HIV-1 resistant to antiretroviral drugs in Thailand | Unpublished | 1e-128 | |
722 342PR 469RT |
0 | ARV Rx and/or other data are N/A |
| Chaplin (2011) | Impact of HIV Type 1 Subtype on Drug Resistance Mutations in Nigerian Patients Failing First-Line Therapy | AIDS Res. Hum. Retroviruses 27 (1), 71-80 (2011) | 1e-168 | 2 2PR 2RT |
2 2RT |
100 | HIVDB |
| Charpentier (2009) | Prevalence of HIV-1 drug resistance in HIV-1 infected patients treated in Douala, Cameroon | Unpublished | 0 | |
56 1PR 56RT |
0 | Pending |
| Charpentier (2011) | High prevalence of antiretroviral drug resistance among HIV-1-untreated patients in Guinea-Conakry and in Niger. | Antivir Ther | 1e-154 | 29 29RT |
29 29RT |
100 | HIVDB |
| Charpentier (2011) | Hot spots of integrase genotypic changes leading to HIV-2 resistance to raltegravir | Unpublished | 1e-100 | |
12 12IN |
0 | Pending |
| Charpentier (2011) | Resistance analyses in highly experienced patients failing raltegravir, etravirine and darunavir/ritonavir regimen | Unpublished | 1e-166 | |
9 9IN |
0 | Pending |
| Chaturbhuj (2010) | Transmitted HIV drug resistance among HIV-infected voluntary counseling and testing centers (VCTC) clients in Mumbai, India. | ARHR | 0 | 34 34PR 34RT |
34 34RT |
100 | HIVDB |
| Chen (2010) | Near full-length genomic characterization of a novel HIV-1 CRF07_ BC/CRF08_ BC recombinant strain from Yunnan, China | AIDS Res. Hum. Retroviruses (2010) In press | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Chen (2012) | Low Prevalence of Drug Resistance and Genetic Diversity among Newly HIV-1 Diagnosed Individuals from 2009 to 2010 in Western Yunnan, China | Unpublished | 1e-174 | 122 122PR 122RT |
122 64PR 93RT |
100 | HIVDB |
| Chen (2013) | HIV-1 genotypes and drug resistance threshold survey in Honghe Prefecture of Yunnan Province in 2011 | Unpublished | 1e-168 | 7 7PR 7RT |
7 6PR 1RT |
100 | HIVDB |
| CHEN (2012) | Molecular epidemiology and drug resistance of HIV type 1 in patients within late-stage infection in Guangdong province, China | Unpublished | 0 | |
179 81PR 179RT |
0 | Pending |
| Chen (1996) | GENETIC characterization of new West African simian immunodeficiency virus SIVsm: geographic clustering of household-derived SIV strains with human immunodeficiency virus type 2 subtypes and genetically diverse viruses from a single feral sooty mangabey troop | J. Virol. 70 (6), 3617-3627 (1996) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Cheng (1992) | MOLECULAR characterization of HIV-2 (ROD) protease following PCR cloning from virus infected H9 cells | Adv. Exp. Med. Biol. 312, 83-88 (1992) | 2e-24 | |
1 1PR |
0 | Laboratory/experimental isolate |
| Chibo (2011) | HIV Transmissions During Seroconversion Contribute Significantly to New Infections in Men Who Have Sex with Men in Australia | AIDS Res. Hum. Retroviruses (2011) In press | 1e-52 | 179 179PR 179RT |
179 179PR |
100 | HIVDB |
| Chin (2009) | Comparison of genotypic resistance mutations in treatment-naive HIV type 1-infected patients in Korea and China. | ARHR | 0 | 64 64PR 64RT |
64 46PR 54RT |
100 | HIVDB |
| Chin (2006) | INVERSE Relationship between Viral Load and Genotypic Resistance Mutations in Korean Patients with Primary HIV Type 1 Infections | AIDS Res. Hum. Retroviruses 22 (11), 1142-1147 (2006) | 1e-147 | 52 52PR 52RT |
52 49PR 52RT |
100 | HIVDB |
| Chin (2007) | EARLY identification of seronegative human immunodeficiency virus type 1 infection with severe presentation | J. Clin. Microbiol. 45 (5), 1659-1662 (2007) | 1e-143 | |
3 3PR 3RT |
0 | Case report(s) / study subset |
| Chin (2007) | FACTORS Associated with Short-term Clinical Parameters after Genotypic Resistance Assay in Korean Patients with HIV-1 Subtype B Virologic Failure | J Korean Med Sci. 2009 Dec;24(6):1031-7. Epub 2009 Nov 7. | 1e-146 | |
40 23PR 40RT |
0 | Pending |
| Chin (2010) | Comparison of genotypic resistance mutations in treatment-naive HIV type 1-infected patients in Korea and China | AIDS Res. Hum. Retroviruses 26 (2), 217-221 (2010) | 1e-164 | 9 9PR 9RT |
9 6PR 6RT |
100 | HIVDB |
| Chin (2010) | Direct Submission | Submitted (09-APR-2010) Aaron Diamond AIDS Researc | 0 | |
1 1RT 1IN |
0 | Unpublished |
| Cho (2005) | DIRECT Submission | Submitted (26-APR-2005) Microbiology, University of Ulsan Co | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Cho (2005) | FULL-LENGTH sequences of long-term slow progressor | Unpublished | 0 | |
6 5PR 6RT 6IN |
0 | Case report(s) / study subset |
| Cho (2006) | VARIATION of vif gene according to progression rate in Korean patients: association with KRG treatment | Unpublished | 0.02 | |
105 105IN |
0 | Gene fragment(s) |
| Cho (2006) | HIV-1 Vif gene | Unpublished | 0.02 | |
75 75IN |
0 | Gene fragment(s) |
| Cho (2012) | Association of high frequency of gross deletions in the pol and 5' LTR/gag genes with Korean red ginseng intake in HIV-1 infected individuals | Unpublished | 1e-167 | |
225 225IN |
0 | ARV Rx and/or other data are N/A |
| Cho (2012) | Direct Submission | Submitted (20-DEC-2011) Department of Microbiology | 0 | |
4 1PR 4RT 4IN |
0 | Unpublished |
| Cho (2012) | Full-length gene in a long-term survivor infected with HIV-1 CRF02_AG | Unpublished | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Cho (2012) | Phylogenetic analysis of full-length Korean subclade of HIV-1 subtype B | Unpublished | 0 | |
10 10PR 10RT 10IN |
0 | Pending |
| Cho (2008) | HIGH Frequency of Gross Deletions in the 5' LTR and gag Regions in HIV Type 1-Infected Long-Term Survivors Treated with Korean Red Ginseng | AIDS Res. Hum. Retroviruses 24 (2), 181-193 (2008) | 1e-52 | |
19 18PR 1IN |
0 | Case report(s) / study subset |
| Cho (2001) | LONG-TERM intake of Korean red ginseng in HIV-1-infected patients: development of resistance mutation to zidovudine is delayed | Int. Immunopharmacol. 1 (7), 1295-1305 (2001) | 4e-96 | 10 10RT |
37 37RT |
27 | HIVDB |
| Cho (2002) | FREQUENCY of mutations conferring resistance to nucleoside reverse transcriptase inhibitors in human immunodeficiency virus type 1-infected patients in Korea | J. Clin. Microbiol. 40 (4), 1319-1325 (2002) | 1e-118 | 6 6RT |
23 6PR 22RT |
26 | HIVDB |
| Cho (2003) | MOLECULAR epidemiologic study of a human immunodeficiency virus 1 outbreak in haemophiliacs B infected through clotting factor 9 after 1990 | Vox Sang. 92 (2), 113-120 (2007) | 0 | |
192 154PR 167RT 6IN |
0 | Evolution/quasispecies study |
| Cho (2005) | FULL sequence of HIV type 1 Korean subtype B in an AIDS case with atypical seroconversion: TAAAA at TATA box | AIDS Res. Hum. Retroviruses 21 (11), 961-964 (2005) | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Cho (2006) | HIGH frequency of grossly deleted nef genes in HIV-1 infected long-term slow progressors treated with Korean red ginseng | Curr. HIV Res. 4 (4), 447-457 (2006) | 0.02 | |
3 3IN |
0 | Case report(s) / study subset |
| Cho (2010) | Phylogenetic analysis of full-length pol gene from Korean hemophiliacs and plasma donors infected with Korean subclade B of HIV-1 | AIDS Res. Hum. Retroviruses (2010) In press | 0 | |
200 141PR 154RT 162IN |
0 | Evolution/quasispecies study |
| Choi (1997) | HIV type 1 isolate Z321, the strain used to make a therapeutic HIV type 1 immunogen, is intersubtype recombinant | AIDS Res. Hum. Retroviruses 13 (4), 357-361 (1997) | 1e-164 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Choi (2010) | Drug susceptibility of human immunodeficiency virus type 1-derived pseudoviruses from treatment-experienced patients to protease inhibitors and reverse transcriptase inhibitors, using a modified single-round assay | J. Clin. Virol. (2010) In press | 1e-174 | |
5 5PR 3RT |
0 | Case report(s) / study subset |
| Chow (2012) | Genome Sequences of a Novel HIV-1 CRF53_01B Identified in Malaysia | J. Virol. 86 (20), 11398-11399 (2012) | 0 | 3 3PR 3RT 3IN |
3 1PR 3RT 3IN |
100 | HIVDB |
| Church (2009) | Analysis of nevirapine (NVP) resistance in Ugandan infants who were HIV infected despite receiving single-dose (SD) NVP versus SD NVP plus daily NVP up to 6 weeks of age to prevent HIV vertical transmission. | J Infect Dis | 0 | 49 49PR 49RT |
49 15PR 49RT |
100 | HIVDB |
| Church (2007) | HIV type 1 variants with nevirapine resistance mutations are rarely detected in antiretroviral drug-naive African women with subtypes A, C, and D | AIDS Res. Hum. Retroviruses 23 (6), 764-768 (2007) | 0 | 47 47PR 47RT |
47 7PR 47RT |
100 | HIVDB |
| Ciccozzi (2005) | MOLECULAR Diversity of HIV in Albania | J. Infect. Dis. 192 (3), 475-479 (2005) | 0 | 66 66PR 66RT |
66 63PR 66RT |
100 | HIVDB |
| Ciccozzi (2007) | THE HIV type 1 epidemic in Bulgaria involves multiple subtypes and is sustained by continuous viral inflow from West and East European countries | AIDS Res. Hum. Retroviruses 24 (6), 771-779 (2008) | 1e-143 | 33 33PR 33RT |
33 33RT |
100 | HIVDB |
| Ciccozzi (2010) | Genetic Diversity of HIV-1 in Montenegro | AIDS Res. Hum. Retroviruses (2010) In press | 0 | |
32 13PR 32RT |
0 | Pending |
| Cilla (2001) | MOLECULAR evidence of homosexual transmission of HIV type 2 in Spain | AIDS Res. Hum. Retroviruses 17 (5), 417-422 (2001) | 7e-05 | |
4 4RT |
0 | Case report(s) / study subset |
| Cinque (2001) | EFFECT of genotypic resistance on the virological response to highly active antiretroviral therapy in cerebrospinal fluid | AIDS Res. Hum. Retroviruses 17 (5), 377-383 (2001) | 1e-129 | 33 15PR 18RT |
57 24PR 33RT |
57 | HIVDB |
| Claassen (2009) | Direct Submission | Submitted (16-NOV-2007) NHLS/University of Stellen | 1e-150 | |
119 119RT |
0 | Pending |
| Clarke (2005) | REVERSE transcriptase and protease sequences from HIV-1 non-subtype B infected persons in the United Kingdom | Unpublished | 0 | 274 118PR 156RT |
497 334PR 379RT |
55 | HIVDB |
| Clavel (1996) | MOLECULAR cloning and polymorphism of the human immune deficiency virus type 2 | Nature 324 (6098), 691-695 (1986) | 1e-98 | 1 1PR 1RT 1IN |
2 2RT 2IN |
50 | HIVDB |
| Cleland (1996) | EVOLUTION of zidovudine resistance-associated genotypes in human immunodeficiency virus type 1-infected patients | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 12 (1), 6-1 | 1e-123 | |
370 370RT |
0 | Gene fragment(s) |
| Clevenbergh (2002) | LONG-TERM virologic outcome in patients infected with multi-nucleoside analogue resistant HIV-1 | Antivir. Ther. (Lond.) (2002) In press | 1e-121 | 24 12PR 12RT |
24 12PR 12RT |
100 | HIVDB |
| Clewley (2001) | A novel simian immunodeficiency virus (SIVdrl) pol sequence from the drill monkey, Mandrillus leucophaeus. | J Virol | 0 | 1 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Clewley (1998) | A novel simian immunodeficiency virus (SIVdrl) pol sequence from the drill monkey, Mandrillus leucophaeus | J. Virol. 72 (12), 10305-10309 (1998) | 1.1 | 1 1PR 1RT |
1 1RT |
100 | HIVDB |
| Cloyd (1990) | SPECTRUM of biological properties of human immunodeficiency virus (HIV-1) isolates | Virology 174 (1), 103-116 (1990) | 1e-164 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Coleman (2011) | Direct Submission | Submitted (16-FEB-2011) Infectious Diseases and Pa | 0 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Collaco Veras (2011) | Molecular Epidemiology of HIV-1 CRF02_AG in Cameroon and African Patients Living in Italy | Unpublished | 0 | |
52 3PR 52RT |
0 | ARV Rx and/or other data are N/A |
| Collman (2000) | An infectious molecular clone of an unusual macrophage-tropic and highly cytopathic strain of human immunodeficiency virus type 1. | J Virol | 1e-163 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Colonno (2004) | IDENTIFICATION of I50L as the Signature Atazanavir (ATV)Resistance Mutation in Treatment-Naive HIV-1Infected Patients Receiving ATV-Containing Regimens | J. Infect. Dis. 189 (10), 1802-1810 (2004) | 3e-51 | 12 12PR |
12 12PR |
100 | HIVDB |
| Condra (1996) | GENETIC correlates of in vivo viral resistance to indinavir, a human immunodeficiency virus type 1 protease inhibitor | J. Virol. 70 (12), 8270-8276 (1996) | 1e-130 | 421 421PR |
421 421PR |
100 | HIVDB |
| Cong (2006) | THE Fitness Cost of Mutations Associated with Human Immunodeficiency Virus Type 1 Drug Resistance Is Modulated by Mutational Interactions | J. Virol. 81 (6), 3037-3041 (2007) | 1e-172 | |
4 4RT |
0 | Laboratory/experimental isolate |
| Coovadia (2008) | PERSISTENT Minority K103N Mutations among Women Exposed to Single-Dose Nevirapine and Virologic Response to Nonnucleoside Reverse-Transcriptase Inhibitor-Based Therapy | Clin. Infect. Dis. (2009) In press | 1e-168 | |
99 99RT |
0 | Pending |
| Corbet (1999) | ENV sequences of simian immunodeficiency viruses from chimpanzees in Cameroon are strongly related to those of human immunodeficiency virus group N from the same geographic area | J. Virol. 74 (1), 529-534 (2000) | 1e-147 | 1 1PR 1RT 1IN |
2 1PR 1RT 2IN |
50 | HIVDB |
| Cornelissen (1997) | POL gene diversity of five human immunodeficiency virus type 1 subtypes: evidence for naturally occurring mutations that contribute to drug resistance, limited recombination patterns, and common ancestry for subtypes B and D | J. Virol. 71 (9), 6348-6358 (1997) | 1e-126 | 41 41PR 41RT |
42 42PR 42RT |
97 | HIVDB |
| Cornelissen (2000) | SPREAD of distinct human immunodeficiency virus type 1 AG recombinant lineages in Africa | J. Gen. Virol. 81 (Pt 2), 515-523 (2000) | 2e-86 | 20 20PR 20RT |
21 21PR 21RT |
95 | HIVDB |
| Courgnaud (1992) | GENETIC differences accounting for evolution and pathogenicity of simian immunodeficiency virus from a sooty mangabey monkey after cross-species transmission to a pig-tailed macaque | J. Virol. 66 (1), 414-419 (1992) | 4.2 | 2 2PR 2RT 2IN |
2 2RT |
100 | HIVDB |
| Courgnaud (2001) | CHARACTERIZATION of a novel simian immunodeficiency virus from guereza colobus monkeys (Colobus guereza) in Cameroon: a new lineage in the nonhuman primate lentivirus family | J. Virol. 75 (2), 857-866 (2001) | 1e-76 | 3 1PR 1RT 3IN |
3 1PR 3RT 3IN |
100 | HIVDB |
| Courgnaud (2002) | CHARACTERIZATION of a Novel Simian Immunodeficiency Virus with a vpu Gene from Greater Spot-Nosed Monkeys (Cercopithecus nictitans) Provides New Insights into Simian/Human Immunodeficiency Virus Phylogeny | J. Virol. 76 (16), 8298-8309 (2002) | 4e-97 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Courgnaud (2003) | PARTIAL Molecular Characterization of Two Simian Immunodeficiency Viruses (SIV) from African Colobids: SIVwrc from Western Red Colobus (Piliocolobus badius) and SIVolc from Olive Colobus (Procolobus verus) | J. Virol. 77 (1), 744-748 (2003) | 1e-149 | 5 1PR 2RT 5IN |
5 5RT 5IN |
100 | HIVDB |
| Courgnaud (2003) | IDENTIFICATION of a New Simian Immunodeficiency Virus Lineage with a vpu Gene Present among Different Cercopithecus Monkeys (C. mona, C. cephus, and C. nictitans) from Cameroon | J. Virol. 77 (23), 12523-12534 (2003) | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Couto-Fernandez (2006) | PHYLOGENETIC Analysis of Brazilian HIV Type 1 Subtype D Strains: Tracing the Origin of This Subtype in Brazil | AIDS Res. Hum. Retroviruses 22 (2), 207-211 (2006) | 0 | 5 5IN |
10 3PR 5RT 5IN |
50 | HIVDB |
| Crandall (1999) | PARALLEL evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection | Mol. Biol. Evol. 16 (3), 372-382 (1999) | 1e-121 | |
41 41PR |
0 | Evolution/quasispecies study |
| Crandall (1999) | ADVANCES in understanding the evolution of HIV | AIDS 13, S39-S47 (1999) | 1e-102 | |
49 49PR |
0 | Evolution/quasispecies study |
| Crowell (2003) | OPTIMIZATION of Oligonucleotide Ligation Assay for Detection of Drug Resistance Mutations in Non-Subtype B HIV-1 | Unpublished | 1e-133 | |
18 17PR 18RT |
0 | ARV Rx and/or other data are N/A |
| Cuevas (2010) | Incidence of non-B subtypes of HIV-1 in Galicia, Spain: high frequency and diversity of HIV-1 among men who have sex with men | Euro Surveill. 14 (47) (2009) | 0 | 92 92PR 92RT |
92 41PR 88RT |
100 | HIVDB |
| Cuevas (2009) | HIV-1 transmission cluster with T215D revertant mutation among newly diagnosed patients from the Basque Country, Spain | J. Acquir. Immune Defic. Syndr. 51 (1), 99-103 (20 | 1e-52 | 233 233PR 233RT |
233 233PR |
100 | HIVDB |
| Cuevas (2010) | Biological and genetic characterization of HIV-1 subtype B and non subtype-B transmitted viruses: usefulness for vaccine candidate assessment | AIDS Res Hum Retroviruses. 2010 Sep;26(9):1019-25 | 0 | |
28 7PR 28RT 28IN |
0 | Pending |
| Cunningham (2002) | DEVELOPMENT of resistance mutations in women receiving standard antiretroviral therapy who received intrapartum nevirapine to prevent perinatal human immunodeficiency virus type 1 transmission: A substudy of pediatric AIDS clinical trials group protocol 316 | J. Infect. Dis. 186 (2), 181-188 (2002) | 5e-92 | |
79 79RT |
0 | ARV Rx and/or other data are N/A |
| D'Arrigo (2007) | GP41 Sequence Variability in HIV Type 1 Non-B Subtypes Infected Patients Undergoing Enfuvirtide Pressure | AIDS Res. Hum. Retroviruses 23 (10), 1296-1302 (2007) | 0 | |
3 3RT |
0 | Case report(s) / study subset |
| da Silveira (2011) | HIV Type 1 Molecular Epidemiology in pol and gp41 Genes Among Naive Patients from Mato Grosso do Sul State, Central Western Brazil | AIDS Res. Hum. Retroviruses (2012) In press | 2e-52 | 23 23PR 23RT |
23 23PR |
100 | HIVDB |
| Damond (2004) | POLYMORPHISM of HIV-2 protease gene and selection of drug resistance mutations in HIV-2 infected patients treated with protease inhibitors | J. Clin. Microbiol. (2004) In press | 5e-25 | |
94 94PR |
0 | Pending |
| Damond (2006) | IDENTIFICATION of a highly divergent HIV type 2 and proposal for a change in HIV type 2 classification | AIDS Res. Hum. Retroviruses 20 (6), 666-672 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Daniel (1993) | SIMIAN immunodeficiency virus from African green monkeys | J. Virol. 62 (11), 4123-4128 (1988) | 1e-33 | |
1 1RT |
0 | Gene fragment(s) |
| Dash (2007) | EXCEPTIONAL molecular and coreceptor-requirement properties of molecular clones isolated from an Human Immunodeficiency Virus Type-1 subtype-C infection | Retrovirology 5 (1), 25 (2008) | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Dau (2010) | Connection domain mutations in treatment-experienced patients in the OPTIMA trial | J. Acquir. Immune Defic. Syndr. 54 (2), 160-166 (2 | 0 | 420 420PR 420RT |
420 106PR 415RT |
100 | HIVDB |
| Daumer (2010) | Short communication: selection of thymidine analogue resistance mutational patterns in children infected from a common HIV type 1 subtype G source | AIDS Res. Hum. Retroviruses 26 (3), 275-278 (2010) | 1e-166 | |
3 3RT |
0 | Evolution/quasispecies study |
| Davaalkham (2011) | Identification of a Current Hot Spot of HIV Type 1 Transmission in Mongolia by Molecular Epidemiological Analysis | AIDS Res. Hum. Retroviruses 27 (10), 1073-1080 (20 | 3e-51 | |
10 10PR |
0 | ARV Rx and/or other data are N/A |
| Dazza (2003) | CHARACTERIZATION of a novel vpu-harboring simian immunodeficiency virus from a Dent's Mona monkey (Cercopithecus mona denti) | J. Virol. 79 (13), 8560-8571 (2005) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| De Arellano (2007) | IMPACT of Ethnicity and HIV Type 1 Subtype on Response to First-Line Antiretroviral Therapy | AIDS Res. Hum. Retroviruses 23 (7), 891-894 (2007) | 1e-134 | |
10 10PR 1RT |
0 | Pending |
| de Baar (2001) | NATURAL residues versus antiretroviral drug-selected mutations in HIV type 1 group O reverse transcriptase and protease related to virological drug failure in vivo | AIDS Res. Hum. Retroviruses 16 (14), 1385-1394 (2000) | 2e-17 | 5 5PR 5RT |
5 5PR 5RT |
100 | HIVDB |
| de Felipe (2011) | Prevalence and resistance mutations of HIV-1 non-B subtypes among immigrants in Southern Spain | Unpublished | 2e-51 | |
48 48PR |
0 | Pending |
| De Maio (2008) | MOLECULAR characterization of the vif accessory gene of HIV-1 from perinatally infected children with different rates of disease progression | Unpublished | 0.032 | |
6 6IN |
0 | Gene fragment(s) |
| De Maio (2012) | APOBEC3 mediated edition in HIV-1 from pediatric patients and its association with APOBEC3G/CUL5 polymorphisms and Vif variability | Unpublished | 2e-53 | |
93 93IN |
0 | Gene fragment(s) |
| de Medeiros (2011) | Co-circulation HIV-1 subtypes B, C, and CRF31_BC in a drug-naive population from Southernmost Brazil: Analysis of primary resistance mutations. | J Med Virol | 8e-52 | 41 41PR 41RT |
41 41PR |
100 | HIVDB |
| de Mendoza (2005) | RESISTANCE to non-nucleoside reverse transcriptase inhibitors and non-B subtypes are on the rise among recent HIV-1 infections in Spain | Unpublished | 0 | |
20 19PR 20RT |
0 | Case report(s) / study subset |
| de Mendoza (2009) | Changes in drug resistance patterns following the introduction of HIV-1 non-B subtypes in Spain | AIDS Res Hum Retroviruses. 2009 Oct;25(10):967-72 | 0 | |
135 9PR 134RT |
0 | Pending |
| de Mulder (2011) | Drug resistance prevalence and HIV-1 variant characterization in the naive and pretreated HIV-1-infected paediatric population in Madrid, Spain | J. Antimicrob. Chemother. 66 (10), 2362-2371 (2011 | 0 | |
178 142PR 79RT |
0 | Pending |
| de Mulder (2013) | High Drug Resistance Prevalence among Vertically HIV-Infected Patients Transferred from Pediatric Care to Adult Units in Spain | PLoS ONE 7 (12), E52155 (2012) | 1e-50 | |
1 1PR |
0 | ARV Rx and/or other data are N/A |
| de Oliveira (2008) | HIGH frequency of BF mosaic genomes among HIV-1-infected children from Sao Paulo, Brazil | Arch. Virol. 153 (10), 1799-1806 (2008) | 0 | |
129 64PR 68RT |
0 | Pending |
| De Pasquale (2004) | DIFFERENCES in HIV-1 pol sequences from female genital tract and blood during antiretroviral therapy | Unpublished | 0 | |
39 39PR 39RT |
0 | ARV Rx and/or other data are N/A |
| de Ronde (2001) | ESTABLISHMENT of new transmissible and drug-sensitive human immunodeficiency virus type 1 wild types due to transmission of nucleoside analogue-resistant virus | J. Virol. 75 (2), 595-602 (2001) | 2e-91 | |
8 8RT |
0 | Case report(s) / study subset |
| De Sa-Filho (2008) | HIV Type 1 pol Gene Diversity and Antiretroviral Drug Resistance Mutations in Santos, Brazil | AIDS Res. Hum. Retroviruses (2008) In press | 1e-154 | 83 83PR 83RT |
83 31PR 83RT |
100 | HIVDB |
| de Silva (2010) | HIV-1 subtype distribution in the Gambia and the significant presence of CRF49_cpx, a novel circulating recombinant form | Retrovirology 7 (1), 82 (2010) | 0 | 3 3PR 3RT 3IN |
3 2RT 3IN |
100 | HIVDB |
| Deacon (1995) | GENOMIC structure of an attenuated quasi species of HIV-1 from a blood transfusion donor and recipients | Science 270 (5238), 988-991 (1995) | 1e-161 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Deeks (1999) | NOVEL four-drug salvage treatment regimens after failure of a human immunodeficiency virus type 1 protease inhibitor-containing regimen: antiviral activity and correlation of baseline phenotypic drug susceptibility with virologic outcome | J. Infect. Dis. 179 (6), 1375-1381 (1999) | 1e-127 | 15 15PR 15RT |
16 16PR 16RT |
93 | HIVDB |
| Dehghani (2003) | UNIQUE Pattern of Convergent Envelope Evolution in Simian Immunodeficiency Virus-Infected Rapid Progressor Macaques: Association with CD4-Independent Usage of CCR5 | J. Virol. 77 (11), 6405-6418 (2003) | 1e-101 | |
2 2RT 2IN |
0 | Laboratory/experimental isolate |
| Deho (2008) | Subtype assignment and phylogenetic analysis of HIV type 1 strains in patients from Swaziland | AIDS Res. Hum. Retroviruses 24 (2), 323-325 (2008) | 5e-50 | 12 12PR 12RT |
12 12PR |
100 | HIVDB |
| Delaugerre (2003) | SELECTION of a rare resistance profile in an HIV-1-infected patient exhibiting a failure to an antiretroviral regimen including tenofovir DF | J. Clin. Virol. 32 (3), 241-244 (2005) | 1e-142 | 1 1RT |
1 1RT |
100 | HIVDB |
| Delaugerre (2011) | Direct Submission | Submitted (11-AUG-2011) Seine Maritime, CHU de Rou | 0 | |
1 1RT 1IN |
0 | Unpublished |
| Delgado (2008) | High prevalence of unique recombinant forms of HIV-1 in Ghana: molecular epidemiology from an antiretroviral resistance study. | JAIDS | 0 | 199 199PR 199RT |
199 2PR 199RT |
100 | HIVDB |
| Delgado (2008) | High prevalence of unique recombinant forms of HIV-1 in Ghana: molecular epidemiology from an antiretroviral resistance study. | JAIDS | 1e-47 | 1 1PR 1RT |
1 1PR |
100 | HIVDB |
| Delgado (2001) | ANALYSIS of HIV type 1 protease and reverse transcriptase sequences from Venezuela for drug resistance-associated mutations and subtype classification: a UNAIDS study | AIDS Res. Hum. Retroviruses 17 (8), 753-758 (2001) | 1e-130 | 199 100PR 100RT 1IN |
199 100PR 100RT |
100 | HIVDB |
| Delgado (2002) | IDENTIFICATION of a newly characterized HIV-1 BG intersubtype circulating recombinant form in Galicia, Spain, which exhibits a pseudotype-like virion structure | J. Acquir. Immune Defic. Syndr. 29 (5), 536-543 (2002) | 2e-71 | 9 9PR 9RT 9IN |
9 9PR 9RT |
100 | HIVDB |
| Delgado (2010) | Identification of a new HIV-1 BF intersubtype circulating recombinant form (CRF44_BF) in Chile | AIDS Res Hum Retroviruses. 2010 Jul;26(7):821-6. | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Delobel (2004) | EVIDENCE for compartmentalization of human immunodeficiency virus type 1 in different blood cell types during prolonged suppressive antiretroviral therapy | Unpublished | 1e-129 | |
212 212RT |
0 | Evolution/quasispecies study |
| Delwart (2011) | Genetic Diversity of recently acquired and prevalent HIV, hepatitis B virus, and hepatitis C virus infections in US blood donors. | J Infect Dis | 1e-175 | 319 319PR 319RT |
319 266PR 319RT |
100 | HIVDB |
| Demarest (2009) | Virologic failure in first-line human immunodeficiency virus therapy with a CCR5 entry inhibitor, aplaviroc, plus a fixed-dose combination of lamivudine-zidovudine: nucleoside reverse transcriptase inhibitor resistance regardless of envelope tropism | Antimicrob. Agents Chemother. 53 (3), 1116-1123 (2 | 1e-171 | |
16 10PR 15RT |
0 | Pending |
| Demeter (2000) | DELAVIRDINE susceptibilities and associated reverse transcriptase mutations in human immunodeficiency virus type 1 isolates from patients in a phase I/II trial of delavirdine monotherapy (ACTG 260) | Antimicrob. Agents Chemother. 44 (3), 794-797 (2000) | 4e-96 | 67 67RT |
67 67RT |
100 | HIVDB |
| Demeter (2001) | IMPACT of Clinical Reverse Transcriptase Sequences on the Replication Capacity of HIV-1 Drug-Resistant Mutants | Unpublished | 4e-96 | |
15 15RT |
0 | Laboratory/experimental isolate |
| Deng (2010) | Molecular tracing of HIV type 1 transmission in Hainan province of China | AIDS. 2009 May 15;23(8):977-85 | 0 | |
1 1RT |
0 | Pending |
| Dennis (2012) | Phylogenetic insights into HIV transmission in North Carolina | AIDS (2012) In press | 0 | 1238 1238PR 1238RT |
1373 1037PR 1373RT |
90 | HIVDB |
| Derache (2006) | GENETIC Diversity and Drug Resistance Mutations in Human Immunodeficiency Virus Type 1 from Untreated Patients in Bamako, Mali | Antivir. Ther. (Lond.) (2007) In press | 1e-140 | 94 93PR 94RT |
94 18PR 93RT |
100 | HIVDB |
| Derache (2008) | EVOLUTION of genetic diversity and drug resistance mutations in HIV-1 among untreated patients from Mali between 2005 and 2006 | J. Antimicrob. Chemother. 62 (3), 456-463 (2008) | 1e-145 | 110 110PR 110RT |
110 7PR 105RT |
100 | HIVDB |
| Deris (2011) | Direct Submission | Submitted (17-NOV-2011) Department of Medical Micr | 3e-51 | |
17 17PR |
0 | Unpublished |
| Deris (2012) | Genotype testing and antiretroviral resistance patterns in HIV-1 children failing treatment in Kelantan, Malaysia | Unpublished | 6e-51 | |
11 11PR |
0 | Pending |
| Deris (2012) | Direct Submission | Submitted (17-NOV-2011) Department of Medical Micr | 5e-49 | |
1 1PR |
0 | Pending |
| Deroo (2002) | HIV-1 subtypes in Luxembourg, 1983-2000 | AIDS 16 (18), 2461-2467 (2002) | 1e-133 | |
568 284PR 284RT |
0 | ARV Rx and/or other data are N/A |
| Desai (2008) | DIRECT Submission | Submitted (05-AUG-2008) Department of Neurovirology, Nationa | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Desai (2009) | HIV-2 isolate NNVB-HIV-2 from India, partial genome | Unpublished | 1e-24 | |
1 1IN |
0 | Pending |
| Desai (2000) | MOLECULAR cloning and primary nucleotide sequence analysis of a distinct human immunodeficiency virus isolate reveal significant divergence in its genomic sequences | Proc. Natl. Acad. Sci. U.S.A. 83 (21), 8380-8384 (1986) | 6e-74 | |
1 1PR |
0 | Gene fragment(s) |
| Descamps (1997) | SUSCEPTIBILITY of human immunodeficiency virus type 1 group O isolates to antiretroviral agents: in vitro phenotypic and genotypic analyses | J. Virol. 71 (11), 8893-8898 (1997) | 3e-19 | 10 10PR 10RT |
10 10PR 10RT |
100 | HIVDB |
| Descamps (2011) | Direct Submission | Submitted (16-DEC-2010) Laboratoire de Virologie, | 0 | 136 136RT |
136 136RT |
100 | HIVDB |
| Deshpande (2004) | MOLECULAR characterization of HIV type 1 isolates from untreated patients of Mumbai (Bombay), India, and detection of rare resistance mutations | AIDS Res. Hum. Retroviruses 20 (9), 1032-1035 (2004) | 1e-146 | 248 122PR 126RT |
248 122PR 126RT |
100 | HIVDB |
| Deshpande (2009) | Phylogenetic analysis of HIV-1 reverse transcriptase sequences from 382 patients recruited in JJ Hospital of Mumbai, India, between 2002 and 2008 | AIDS Res. Hum. Retroviruses 25 (6), 633-635 (2009) | 1e-150 | 86 86RT |
86 86RT |
100 | HIVDB |
| Desire (2001) | QUANTIFICATION of human immunodeficiency virus type 1 proviral load by a TaqMan real-time PCR assay | J. Clin. Microbiol. 39 (4), 1303-1310 (2001) | 3e-15 | |
16 16IN |
0 | Gene fragment(s) |
| Devereux (1999) | RAPID decline in detectability of HIV-1 drug resistance mutations after stopping therapy | AIDS 13 (18), 123-127 (1999) | 1e-128 | |
48 47PR 43RT |
0 | Evolution/quasispecies study |
| Devereux (1999) | SUBSTANTIAL correlation between HIV-1 drug-associated resistance mutations detected in plasma and peripheral blood mononuclear cells in heavily treated patients | Unpublished | 1e-127 | |
76 38PR 38RT |
0 | Pending |
| Devereux (2000) | REDUCTION in human immunodeficiency virus type 1 mutations associated with drug resistance after initiating new therapeutic regimens in pretreated patients | J. Infect. Dis. 181 (5), 1804-1807 (2000) | 1e-127 | |
80 40PR 40RT |
0 | Evolution/quasispecies study |
| Devereux (2000) | IN vivo HIV-1 compartmentalisation: drug resistance-associated mutation distribution | J. Med. Virol. 66 (1), 8-12 (2002) | 1e-122 | |
213 122PR 91RT |
0 | Evolution/quasispecies study |
| Devereux (2001) | REPLICATIVE fitness in vivo of HIV-1 variants with multiple drug resistance-associated mutations | J. Med. Virol. 65 (2), 218-224 (2001) | 1e-124 | |
27 27PR 27RT |
0 | Evolution/quasispecies study |
| Dewhurst (1993) | SEQUENCE analysis and acute pathogenicity of molecularly cloned SIVSMM-PBj14 | Nature 345 (6276), 636-640 (1990) | 1e-101 | |
5 2RT 5IN |
0 | Laboratory/experimental isolate |
| Diallo (2003) | THE M184V Substitution in Human Immunodeficiency Virus Type 1 Reverse Transcriptase Delays the Development of Resistance to Amprenavir and Efavirenz in Subtype B and C Clinical Isolates | Antimicrob. Agents Chemother. 47 (7), 2376-2379 (2003) | 1e-135 | |
6 3PR 3RT |
0 | Laboratory/experimental isolate |
| Diamond (2001) | IDENTIFICATION of a simian immunodeficiency virus reverse transcriptase variant with enhanced replicational fidelity in the late stage of viral infection | J. Biol. Chem. 276 (26), 23624-23631 (2001) | 1.1 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Diamond (2002) | MONITORING Fidelity Change of Simian Immunodeficiency Virus Reverse Transcriptase (RT) During the Course of Viral Infection: A New RT Mutation Responsible for In Vivo RT Fidelity Change | Unpublished | 0.017 | |
2 2RT |
0 | Laboratory/experimental isolate |
| Diaz (2008) | SELECTIVE regimes and evolutionary rates of HIV-1 subtype B V3 variants in the Brazilian epidemic | Virology 381 (2), 184-193 (2008) | 0 | |
6 4PR 6RT 6IN |
0 | Case report(s) / study subset |
| Dietrich (1997) | A highly divergent HIV-2-related isolate | Nature 342 (6252), 948-950 (1989) | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Dieudonne (2005) | HIGH prevalence of secondary resistance mutations in Venezuelan HIV-1 isolates | Invest. Clin. 47 (1), 27-34 (2006) | 1e-145 | |
30 22PR 30RT |
0 | Pending |
| Dilernia (2007) | HIV Type 1 Genetic Diversity Surveillance among Newly Diagnosed Individuals from 2003 to 2005 in Buenos Aires, Argentina | AIDS Res. Hum. Retroviruses 23 (10), 1201-1207 (2007) | 0 | 283 283PR 283RT |
283 222PR 282RT |
100 | HIVDB |
| Diop-Ndiaye (2010) | Antiretroviral Drug Resistance Mutations in antiretroviral-naive patients from 1998 to 2007 in Senegal | AIDS Res Hum Retroviruses. 2010 Sep 19. [Epub ahead of print | 0 | 122 122PR 122RT |
122 5PR 122RT |
100 | HIVDB |
| Dos Ramos Farias (2012) | HIV, HBV and HCV molecular epidemiology among trans (transvestites, transsexuals and transgender) sex workers in Argentina | Unpublished | 0 | |
57 21PR 53RT |
0 | ARV Rx and/or other data are N/A |
| Doualla-Bell (2007) | HIGH prevalence of the K65R mutation in human immunodeficiency virus type 1 subtype C isolates from infected patients in Botswana treated with didanosine-based regimens | Antimicrob. Agents Chemother. 50 (12), 4182-4185 (2006) | 1e-176 | 23 23RT |
23 23RT |
100 | HIVDB |
| Dourado (2005) | HIV in the general population of an urban center in northeast Brazil | Unpublished | 2e-51 | |
4 4PR |
0 | Case report(s) / study subset |
| Dowling (2002) | FORTY-ONE near full-length HIV-1 sequences from Kenya reveal an epidemic of subtype A and A-containing recombinants | AIDS 16 (13), 1809-1820 (2002) | 1e-166 | 41 41PR 41RT 41IN |
41 41PR 41RT 41IN |
100 | HIVDB |
| Drexler (2006) | RATES of and Reasons for Failure of Commercial Human Immunodeficiency Virus Type 1 Viral Load Assays in Brazil | J. Clin. Microbiol. 45 (6), 2061-2063 (2007) | 1e-143 | |
16 6PR 16RT |
0 | Case report(s) / study subset |
| Duan (2001) | INHIBITION of purified recombinant reverse transcriptase from wild-type and zidovudine-resistant clinical isolates of human immunodeficiency virus type 1 by zidovudine, stavudine, and lamivudine triphosphates | J. Infect. Dis. 184 (10), 1336-1340 (2001) | 5e-89 | |
2 2RT |
0 | Laboratory/experimental isolate |
| Dumans (2002) | PREVALENCE of protease and reverse transcriptase drug resistance mutations over time in drug-naive human immunodeficiency virus type 1-positive individuals in Rio de Janeiro, Brazil | Antimicrob. Agents Chemother. 46 (9), 3075-3079 (2002) | 1e-129 | 101 54PR 47RT |
102 55PR 47RT |
99 | HIVDB |
| Dumans (2004) | SYNONYMOUS Genetic Polymorphisms within Brazilian Human Immunodeficiency Virus Type 1 Subtypes May Influence Mutational Routes to Drug Resistance | J. Infect. Dis. 189 (7), 1232-1238 (2004) | 0 | 184 82PR 129RT |
188 84PR 131RT 1IN |
97 | HIVDB |
| Dumans (2008) | DISTINCT resistance mutation and polymorphism acquisition in HIV-1 protease of subtypes B and F1 from children and adult patients under virological failure | Infect. Genet. Evol. 9 (1), 62-70 (2009) | 0 | 118 118PR 88RT |
118 67PR 65RT |
100 | HIVDB |
| Dunne (2001) | COMPARISON of genotyping and phenotyping methods for determining susceptibility of HIV-1 to antiretroviral drugs | AIDS 15 (12), 1471-1475 (2001) | 1e-124 | 17 17PR 17RT |
17 17PR 17RT |
100 | HIVDB |
| Duque (1999) | Human immunodeficiency virus type 1 recombinant B/G subtypes circulating in Coimbra, Portugal. | Clin Microbiol Infect | 1e-126 | 29 29PR |
31 31PR |
93 | HIVDB |
| Duque (2002) | THERAPEUTICS failure: Portuguese Cohort | Unpublished | 1e-128 | 104 104RT |
316 212PR 104RT |
32 | HIVDB |
| Duque (2002) | HUMAN immunodeficiency virus type 1 M36TV insertion in protease sequence | Unpublished | 1e-78 | |
2 2PR |
0 | Pending |
| Dvali (2010) | Characterization of HIV-1 Subtypes and Drug Resistance Mutations among Infected Individuals in Georgia | Unpublished | 1e-49 | |
7 7PR |
0 | Pending |
| Dykes (2004) | DETECTION of Minority Drug-Resistant Variants of HIV-1 During Virologic Failure of Zidovudine (ZDV), Lamivudine (3TC), and Indinavir (IDV) | Unpublished | 0 | |
270 270PR 212RT |
0 | Evolution/quasispecies study |
| Dzissyuk (2011) | Direct Submission | Submitted (16-DEC-2010) Science, Republican Center | 4e-50 | |
16 16PR |
0 | Unpublished |
| Eberle (2008) | SEQUENCE of a HIV-1 Subtype F that is underquantified by Roche COBAS TaqMan and COBAS Amplicor Virus Load Tests | Unpublished | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Edmonson (1998) | EVOLUTION of a simian immunodeficiency virus pathogen | J. Virol. 72 (1), 405-414 (1998) | 4e-22 | |
1 1IN |
0 | Laboratory/experimental isolate |
| El Annaz (2010) | Presence of drug resistance mutations among drug-naive patients in Morocco | AIDS Res. Hum. Retroviruses (2010) In press | 1e-148 | 59 48PR 11RT |
59 48PR 11RT |
100 | HIVDB |
| El Annaz (2011) | Drug resistance mutations in HIV-1 isolates from patients failing antiretroviral therapy in Morocco | AIDS Res. Hum. Retroviruses (2011) In press | 7e-52 | 23 23PR |
23 23PR |
100 | HIVDB |
| El-Khatib (2011) | Viremia and drug resistance among HIV-1 patients on antiretroviral treatment: a cross-sectional study in Soweto, South Africa | AIDS 24 (11), 1679-1687 (2010) | 1e-167 | 54 47PR 54RT |
54 10PR 54RT |
100 | HIVDB |
| Ellenberger (1997) | Genetic analysis of human immunodeficiency virus in Abidjan, Ivory Coast reveals predominance of HIV type 1 subtype A and introduction of subtype G. | ARHR | 7e-86 | 20 20PR |
23 23PR |
86 | HIVDB |
| Ellis (2009) | Increased detection of HIV-1 drug-resistance at primary diagnosis in peripheral blood cells compared to plasma | Unpublished | 0 | |
58 55PR 6RT |
0 | Evolution/quasispecies study |
| Ellis (2011) | Selection of HIV Resistance Associated with Antiretroviral Therapy (ART) Initiated due to Pregnancy and Suspended Postpartum | J Acquir Immune Defic Syndr (2011) | 0 | |
41 38PR 37RT |
0 | Pending |
| English (2011) | Transmission of highly distinct HIV-1 variants from a single donor | Unpublished | 1e-152 | |
66 66RT |
0 | Case report(s) / study subset |
| Eremin (2010) | CRF02_A/G isolated from patient on HAART with NRTIs and NNRTIs high level resistance | Unpublished | 1e-178 | |
1 1RT |
0 | Unpublished |
| Eremin (2010) | Genotyping HIV-1 isolated from HIV-infected children born to HIV-infected mothers | Unpublished | 0 | |
1 1RT |
0 | Case report(s) / study subset |
| Eron (1998) | RESISTANCE of HIV-1 to antiretroviral agents in blood and seminal plasma: implications for transmission | AIDS 12 (15), F181-F189 (1998) | 1e-130 | |
59 59PR 59RT |
0 | Pending |
| Escobar (2012) | Transmitted drug-resistance in antiretroviral-naive HIV-infected population in El Salvador | Unpublished | 0 | 67 65PR 67RT |
67 42PR 58RT |
100 | HIVDB |
| Escoto-Delgadillo (2007) | DRUG-RESISTANCE mutations in antiretroviral-naive patients with established HIV-1 infection in Mexico | HIV Med. 6 (6), 403-409 (2005) | 7e-51 | 7 7RT |
31 31PR |
22 | HIVDB |
| Eshleman (2001) | IMPACT of human immunodeficiency virus type 1 (hiv-1) subtype on women receiving single-dose nevirapine prophylaxis to prevent hiv-1 vertical transmission (hiv network for prevention trials 012 study) | J. Infect. Dis. 184 (7), 914-917 (2001) | 1e-110 | 102 102PR 102RT |
102 102PR 102RT |
100 | HIVDB |
| Eshleman (2001) | ANALYSIS of human immunodeficiency virus type 1 drug resistance in children receiving nucleoside analogue reverse-transcriptase inhibitors plus nevirapine, nelfinavir, or ritonavir (Pediatric AIDS Clinical Trials Group 377) | J. Infect. Dis. 183 (12), 1732-1738 (2001) | 1e-129 | 229 229PR 229RT |
229 229PR 229RT |
100 | HIVDB |
| Eshleman (2002) | SURVIVAL of Ugandan infants with subtype A and D HIV-1 infection (HIVNET 012) | J. Acquir. Immune Defic. Syndr. 31 (3), 327-330 (2002) | 1e-112 | 54 54PR 54RT |
54 54PR 54RT |
100 | HIVDB |
| Eshleman (2003) | USE of uracil N-glycosylase (UNG) negative Escherichia coli to clone dUTP-containing HIV-1 DNA generated using a commercial HIV-1 genotyping system | Unpublished | 0 | |
20 20PR 20RT |
0 | Laboratory/experimental isolate |
| Eshleman (2004) | CHARACTERIZATION of nevirapine resistance mutations in women with subtype A vs. D HIV-1 6-8 weeks after single-dose nevirapine (HIVNET 012) | J. Acquir. Immune Defic. Syndr. 35 (2), 126-130 (2004) | 0 | 178 178PR 178RT |
178 178PR 178RT |
100 | HIVDB |
| Eshleman (2004) | PERFORMANCE of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for Sequence-Based Analysis of Diverse Human Immunodeficiency Virus Type 1 Strains | J. Clin. Microbiol. 42 (6), 2711-2717 (2004) | 0 | 124 124PR 124RT |
124 124PR 124RT |
100 | HIVDB |
| Eshleman (2004) | COMPARISON of nevirapine (NVP) resistance in Ugandan women 7 days vs. 6-8 weeks after single-dose NVP prophylaxis: HIVNET 012 | AIDS Res. Hum. Retroviruses 20 (6), 595-599 (2004) | 0 | 76 76PR 76RT |
78 78PR 78RT |
97 | HIVDB |
| Eshleman (2005) | LIMITED Evolution in the HIV Type 1 pol Region among Acute Seroconverters in Pune, India | AIDS Res. Hum. Retroviruses 21 (1), 93-97 (2005) | 0 | 29 29PR 29RT |
33 33PR 33RT |
87 | HIVDB |
| Eshleman (2005) | NEVIRAPINE (NVP) Resistance in Women with HIV-1 Subtype C, Compared with Subtypes A and D, after the Administration of Single-Dose NVP | J. Infect. Dis. 192 (1), 30-36 (2005) | 0 | 65 65PR 65RT |
67 58PR 67RT |
97 | HIVDB |
| Eshleman (2005) | DISTINCT patterns of emergence and fading of K103N and Y181C in women with subtype A vs. D after single-dose nevirapine: HIVNET 012 | J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005) | 0 | |
81 80PR 81RT |
0 | Evolution/quasispecies study |
| Eshleman (2006) | PHENOTYPIC drug resistance patterns in subtype A HIV-1 clones with non-nucleoside reverse transcriptase (NNRTI) resistance mutations | AIDS Res. Hum. Retroviruses (2005) In press | 0 | 35 35PR 35RT |
35 31PR 35RT |
100 | HIVDB |
| Eshleman (2006) | NEVIRIPINE Resistance in Malawian Infants | AIDS. 2005 Dec 2;19(18):2167-9. | 0 | |
78 54PR 78RT |
0 | Pending |
| Eshleman (2007) | ANTIRETROVIRAL drug resistance, HIV-1 tropism, and HIV-1 subtype among men who have sex with men with recent HIV-1 infection | AIDS 21 (9), 1165-1174 (2007) | 0 | 195 195PR 195RT |
195 186PR 195RT |
100 | HIVDB |
| Eshleman (2008) | HIV-1 variants with nevirapine resistance mutations are rarely detected in antiretroviral drug naive African women with subtypes A, C, and D | AIDS Res. Hum. Retroviruses (2007) In press | 0 | 198 198PR 198RT |
198 82PR 198RT |
100 | HIVDB |
| Eshleman (2009) | Analysis of pol integrase sequences in diverse HIV type 1 strains using a prototype genotyping assay | AIDS Res. Hum. Retroviruses 25 (3), 343-345 (2009) | 1e-167 | 110 110IN |
120 120IN |
91 | HIVDB |
| Eshleman (2009) | Antiretroviral drug susceptibility among drug-naive adults with recent HIV infection in Rakai, Uganda | AIDS 27 (7), 845-852 (2009) | 1e-169 | 104 104PR 104RT |
104 82PR 54RT |
100 | HIVDB |
| Eshleman (2011) | Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV Prevention Trials Network 052 Trial | J. Infect. Dis. (2011) In press | 0 | |
226 48PR 226RT |
0 | Evolution/quasispecies study |
| Espinosa (2002) | INTERSUBTYPE BF recombinants of HIV-1 in a population of injecting drug users in Argentina | J. Acquir. Immune Defic. Syndr. 36 (1), 630-636 (2004) | 1e-102 | 21 21PR 21RT |
21 21PR 21RT |
100 | HIVDB |
| Esteves (2007) | FULL-LENGTH HIV-1 subtype G molecular clone | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Etiebet (2011) | Tenofovir Disoproxil Fumarate based regimens associated with less nucleoside reverse transcriptase inhibitors drug resistance mutations in Nigerian patients failing first-line anti-retroviral therapy | Unpublished | 1e-52 | |
15 15PR |
0 | Pending |
| Etienne (2012) | Non-invasive follow-up of simian immunodeficiency virus infection in wild-living non-habituated western lowland gorillas in Cameroon | J. Virol. (2012) In press | 2e-25 | |
6 6IN |
0 | Pending |
| Eyer-Silva (2002) | REMISSION of HIV-associated myelopathy after initiation of lopinavir in a patient with extensive previous exposure to highly active antiretroviral therapy | AIDS 16 (17), 2367-2369 (2002) | 4e-47 | |
1 1PR |
0 | Case report(s) / study subset |
| Eyer-Silva (2006) | MOLECULAR epidemiology of HIV-1 infection in a small Brazilian county: usefulness of envelope and polymerase sequences to epidemiologic studies | J. Acquir. Immune Defic. Syndr. 41 (5), 664-670 (2006) | 1e-136 | |
54 15PR 54RT |
0 | ARV Rx and/or other data are N/A |
| Eyer-Silva (2007) | MOLECULAR Epidemiology of HIV Type 1 in Inner Rio De Janeiro State, Brazil | AIDS Res. Hum. Retroviruses 23 (2), 303-308 (2007) | 0 | 24 24PR 24RT |
79 31PR 78RT |
30 | HIVDB |
| Eyer-Silva (2008) | AUTOCHTHONOUS horizontal transmission of a CRF02_AG strain revealed by a human immunodeficiency virus type 1 diversity survey in a small city in inner state of Rio de Janeiro, Southeast Brazil | Mem. Inst. Oswaldo Cruz 102 (7), 809-815 (2007) | 0 | 9 9PR 9RT |
9 8PR 1RT |
100 | HIVDB |
| Eyre (2006) | MULTIPLE drug resistance mutations in human immunodeficiency virus in semen but not blood of a man on antiretroviral therapy | Urology 55 (4), 591 (2000) | 2e-52 | |
33 33PR |
0 | Case report(s) / study subset |
| Eyzaguirre (2006) | FIRST Molecular Surveillance Report of HIV Type 1 in Injecting Drug Users And Female Sex Workers along The U.S.-Mexico Border | AIDS Res. Hum. Retroviruses 23 (2), 331-334 (2007) | 1e-149 | |
11 10PR 11RT |
0 | Case report(s) / study subset |
| Eyzaguirre (2007) | GENETIC Characterization of HIV-1 Strains Circulating in Kazakhstan | J. Acquir. Immune Defic. Syndr. (2007) In press | 0 | 71 71PR 71RT 6IN |
75 73PR 6RT 6IN |
94 | HIVDB |
| Eyzaguirre (2011) | Low HIV-1 viral load associated with increased prevalence of defective proviruses in Natural Viral Suppressors | Unpublished | 0 | |
46 36PR 46RT 46IN |
0 | Unpublished |
| Eyzaguirre (2011) | Molecular Epidemiology of Human Immunodeficiency Virus-Infected Individuals in Paraguay | Unpublished | 0 | |
25 14PR 25RT 25IN |
0 | ARV Rx and/or other data are N/A |
| Eyzaguirre (2011) | Characterization of Acute HIV-1 Infection in High-Risk Nigerian Populations and the comparison with Acute HIV-1 Subtype B Infection | Unpublished | 0 | |
14 2PR 14RT 14IN |
0 | Pending |
| Eyzaguirre (2011) | Molecular Epidemiology of Human Immunodeficiency Virus Infected Individuals in Uruguay | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Unpublished |
| Falloon (2000) | COMBINATION therapy with amprenavir, abacavir, and efavirenz in human immunodeficiency virus (HIV)-infected patients failing a protease-inhibitor regimen: pharmacokinetic drug interactions and antiviral activity | Clin. Infect. Dis. 30 (2), 313-318 (2000) | 1e-118 | 40 20PR 20RT |
40 20PR 20RT |
100 | HIVDB |
| Fang (2000) | GENETIC Variability of the HIV-1 Sequences from Plasma and Cervical Compartments | Unpublished | 1e-164 | |
42 42PR 42RT 18IN |
0 | Evolution/quasispecies study |
| Fang (2001) | ANALYSIS of transition from long-term nonprogressive to progressive infection identifies sequences that may attenuate HIV type 1 | AIDS Res. Hum. Retroviruses 17 (15), 1395-1404 (2001) | 1e-163 | |
10 10PR 10RT 10IN |
0 | Case report(s) / study subset |
| Fang (2004) | LONG-TERM Survivors in Nairobi: Complete HIV-1 RNA Sequences and Immunogenetic Associations | J. Infect. Dis. 190 (4), 697-701 (2004) | 0 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Fang (2002) | PCR-MEDIATED recombination: a general method applied to construct chimeric infectious molecular clones of plasma-derived HIV-1 RNA | Nat. Med. 5 (2), 239-242 (1999) | 1e-163 | |
2 2PR 2RT 2IN |
0 | Laboratory/experimental isolate |
| Fang (2003) | RECOMBINATION following superinfection by HIV-1 | AIDS 18 (2), 153-159 (2004) | 0 | |
3 3PR 3RT 3IN |
0 | Case report(s) / study subset |
| Fang (1995) | UNIQUE insertion sequence and pattern of CD4 expression in variants selected with immunotoxins from human immunodeficiency virus type 1-infected T cells | J. Virol. 69 (1), 75-81 (1995) | 1e-164 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Farrar (1991) | CHARACTERISATION of a series of human immunodeficiency virus isolates derived sequentially from a single patient | J. Med. Virol. 34 (2), 104-113 (1991) | 1e-163 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Federico (1989) | BIOLOGIC and molecular characterization of producer and nonproducer clones from HUT-78 cells infected with a patient HIV isolate | AIDS Res. Hum. Retroviruses 5 (4), 385-396 (1989) | 1e-165 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Fernandez (2006) | FITNESS Landscape of Human Immunodeficiency Virus Type 1 Protease Quasispecies | J. Virol. 81 (5), 2485-2496 (2007) | 1e-52 | |
295 295PR |
0 | Evolution/quasispecies study |
| Fernandez-Garcia (2008) | DEVELOPMENT of a Panel of Well-Characterized Human Immunodeficiency Virus Type 1 Isolates from Newly Diagnosed Patients Including Acute and Recent Infections | AIDS Res. Hum. Retroviruses 25 (1), 93-102 (2009) | 0 | |
14 3PR 14RT 14IN |
0 | Case report(s) / study subset |
| Fernandez-Garcia (2009) | Near full-length genome characterization of a newly identified HIV type 1 subtype F variant circulating in St. Petersburg, Russia | AIDS Res. Hum. Retroviruses 25 (11), 1187-1191 (20 | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Fernandez-Garcia (2010) | Identification of a new HIV-1 circulating BF intersubtype recombinant form (CRF47_BF) in Spain | AIDS Res. Hum. Retroviruses (2010) In press | 0 | 4 4PR 4RT 2IN |
7 4PR 7RT 2IN |
57 | HIVDB |
| Fernandez-Garcia (2012) | The analysis of near full-length genome sequences of HIV-1 subtype A viruses from Russia supports the monophyly of major intrasubtype clusters | AIDS Res. Hum. Retroviruses (2012) In press | 0 | 10 10PR 10RT 10IN |
10 4PR 10RT 10IN |
100 | HIVDB |
| Ferrari (2004) | HLA-A and -B allele expression and ability to develop anti-Gag cross-clade responses in subtype C HIV-1 infected Ethiopians | Hum. Immunol. 65 (6), 648-659 (2004) | 8e-08 | |
11 11PR |
0 | Gene fragment(s) |
| Ferreira (2008) | Molecular characterisation of newly identified HIV-1 infections in Curitiba, Brazil: preponderance of clade C among males with recent infections. | Mem Ins Oswaldo Cruz | 0 | 37 37PR 37RT |
37 31PR 12RT |
100 | HIVDB |
| Ferreira (2011) | Moderate prevalence of transmitted drug resistance and high HIV-1 genetic diversity in patients from Mato Grosso State, Central Western Brazil | J. Med. Virol. 83 (8), 1301-1307 (2011) | 2e-51 | 50 50PR 50RT |
50 50PR |
100 | HIVDB |
| Ferreira (2011) | Moderate prevalence of transmitted drug resistance and high HIV-1 genetic diversity in patients from Mato Grosso State, Central Western Brazil | J. Med. Virol. 83 (8), 1301-1307 (2011) | 4e-47 | 1 1PR 1RT |
1 1PR |
100 | HIVDB |
| Ferreira (2010) | Prevalence of primary drug resistance-associated mutations among HIV type 1 vertically Infected children in Belo Horizonte, Brazil | AIDS Res. Hum. Retroviruses 26 (2), 229-232 (2010) | 0 | 40 40PR 40RT |
40 12PR 40RT |
100 | HIVDB |
| Finzi (1997) | IDENTIFICATION of a reservoir for HIV-1 in patients on highly active antiretroviral therapy | Science 278 (5341), 1295-1300 (1997) | 1e-124 | |
12 12PR 12RT |
0 | Evolution/quasispecies study |
| Fischer (2012) | Distinct Evolutionary Pressures Underlie Diversity in Simian Immunodeficiency Virus and Human Immunodeficiency Virus Lineages | J. Virol. 86 (24), 13217-13231 (2012) | 0 | |
24 24RT 24IN |
0 | Pending |
| Fischetti (2003) | MOLECULAR epidemiology of HIV in Ghana: dominance of CRF02_AG | J. Med. Virol. 73 (2), 158-166 (2004) | 4e-85 | |
235 235RT |
0 | Gene fragment(s) |
| Fish (2010) | Natural polymorphisms of integrase among HIV type 1-infected South African patients | AIDS Res. Hum. Retroviruses 26 (4), 489-493 (2010) | 1e-163 | 73 73IN |
73 73IN |
100 | HIVDB |
| Fisher (2012) | Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen | J. Virol. 86 (11), 6231-6237 (2012) | 1e-48 | |
2 2PR |
0 | Case report(s) / study subset |
| Fitzgibbon (1991) | IN vivo prevalence of azidothymidine (AZT) resistance mutations in an AIDS patient before and after AZT therapy | AIDS Res. Hum. Retroviruses 7 (3), 265-269 (1991) | 3e-56 | |
18 18RT |
0 | Case report(s) / study subset |
| Fitzgibbon (1993) | HUMAN immunodeficiency virus type 1 pol gene mutations in an AIDS patient treated with multiple antiretroviral drugs | J. Virol. 67 (12), 7271-7275 (1993) | 9e-94 | |
23 23RT |
0 | Case report(s) / study subset |
| Fitzgibbon (1993) | A new type of G-->A hypermutation affecting human immunodeficiency virus | AIDS Res. Hum. Retroviruses 9 (9), 833-838 (1993) | 6e-67 | |
2 2RT |
0 | Case report(s) / study subset |
| Fitzgibbon (1993) | HUMAN immunodeficiency virus type 1 pol gene mutations which cause decreased susceptibility to 2',3'-dideoxycytidine | Antimicrob. Agents Chemother. 36 (1), 153-157 (1992) | 8e-54 | 17 17RT |
17 17RT |
100 | HIVDB |
| Fitzgibbon (2001) | EMERGENCE of drug resistance mutations in a group of HIV-infected children taking nelfinavir-containing regimens | AIDS Res. Hum. Retroviruses 17 (14), 1321-1328 (2001) | 1e-126 | 51 28PR 23RT |
51 28PR 23RT |
100 | HIVDB |
| Flaherty (1997) | MOLECULAR and biological characterization of a neurovirulent molecular clone of simian immunodeficiency virus | J. Virol. 71 (8), 5790-5798 (1997) | 5e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Fleury (2011) | Drug resistance mutations in HIV-1 isolates from naive patients eligible for first line ART in JJ Hospital, Mumbai, India | AIDS Res. Hum. Retroviruses (2011) In press | 5e-50 | 5 5PR |
5 5PR |
100 | HIVDB |
| Fleury (2012) | Molecular characterization of HIV-1 in Brazzaville, Republic of Congo, and first data on resistance to antiretroviral drugs | AIDS Res. Hum. Retroviruses (2012) In press | 4e-51 | |
14 14PR |
0 | Pending |
| Florea (2012) | HIV transmitted drug resistance in Romania 2007-2010 | Unpublished | 0 | 62 62PR 62RT |
62 62RT |
100 | HIVDB |
| Flores (1999) | HIV-1 subtype F in single and dual infections in Puerto Rico: A potential sentinel site for monitoring novel genetic HIV variants in North America | Emerging Infect. Dis. 5 (3), 481-483 (1999) | 1e-130 | 19 19PR |
19 19PR |
100 | HIVDB |
| Fogel (2012) | Analysis of nevirapine resistance in HIV-infected infants who received extended nevirapine or nevirapine/zidovudine prophylaxis | AIDS. 2011 Apr | 0 | |
61 12PR 61RT |
0 | Pending |
| Fokam (2012) | Drug resistance among drug-naive and first-line antiretroviral treatment-failing children in Cameroon | Pediatr. Infect. Dis. J. 30 (12), 1062-1068 (2011) | 0 | 67 67PR 67RT |
67 4PR 66RT |
100 | HIVDB |
| Fomsgaard (1991) | A highly divergent proviral DNA clone of SIV from a distinct species of African green monkey | Virology 182 (1), 397-402 (1991) | 1e-113 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Fomsgaard (2008) | FULL-LENGTH Characterization of A1/D Intersubtype Recombinant Genomes from a Therapy-Induced HIV Type 1 Controller during Acute Infection and His Noncontrolling Partner | AIDS Res. Hum. Retroviruses 24 (3), 463-472 (2008) | 0 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Fonjungo (2000) | HUMAN immunodeficiency virus type 1 group m protease in cameroon: genetic diversity and protease inhibitor mutational features | J. Clin. Microbiol. 40 (3), 837-845 (2002) | 1e-121 | 110 110PR |
111 111PR |
99 | HIVDB |
| Foster (2012) | Novel HIV-1 recombinants circulating in the United Kingdom among men who have sex with men | Unpublished | 0 | |
6 4PR 6RT 6IN |
0 | Case report(s) / study subset |
| Frahm (2006) | INCREASED Sequence Diversity Coverage Improves Detection of HIV-Specific T Cell Responses | J. Immunol. 179 (10), 6638-6650 (2007) | 0 | |
8 6PR 8RT 8IN |
0 | Case report(s) / study subset |
| Franchini (1996) | MOLECULAR and biological characterization of a replication competent human immunodeficiency type 2 (HIV-2) proviral clone | Proc. Natl. Acad. Sci. U.S.A. 86 (7), 2433-2437 (1989) | 0.017 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Franchini (2004) | SEQUENCE of simian immunodeficiency virus and its relationship to the human immunodeficiency viruses | Nature 328 (6130), 539-543 (1987) | 0 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Frange (2008) | NEW and Old Complex Recombinant HIV-1 Strains Among Patients with Primary Infection in 1996-2006 in France: the French ANRS CO06 Primo Cohort Study | Unpublished | 0 | |
2 2RT 2IN |
0 | Case report(s) / study subset |
| Frange (2012) | Recent HIV-1 Infection Contributes to the Viral Diffusion over the French Territory with a Recent Increasing Frequency | PLoS ONE 7 (2), E31695 (2012) | 1e-180 | 3 3PR 3RT |
3 3PR 1RT |
100 | HIVDB |
| Freitas (2012) | Novel multi-region hybridization assay for the identification of the most prevalent genetic forms of the human immunodeficiency virus type 1 (HIV-1) circulating in Portugal | AIDS Res. Hum. Retroviruses (2012) In press | 0 | |
3 3RT 3IN |
0 | ARV Rx and/or other data are N/A |
| Frenkel (2002) | MULTIPLE Viral Genetic Analyses Detect Low-Level Human Immunodeficiency Virus Type 1 Replication during Effective Highly Active Antiretroviral Therapy | J. Virol. 77 (10), 5721-5730 (2003) | 1e-135 | |
979 777PR 801RT |
0 | Evolution/quasispecies study |
| Frenkel (2003) | DRUG-RESISTANT mutants of human immunodeficiency virus type 1 persist at higher concentrations in peripheral blood mononuclear cells compared to plasma and are detected at a higher rate by OLA compared to consensus sequencing | Unpublished | 1e-136 | |
107 57PR 99RT |
0 | ARV Rx and/or other data are N/A |
| Frentz (2012) | Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe | Unpublished | 2e-52 | 709 709PR 709RT |
709 709PR |
100 | HIVDB |
| Fujisaki (2009) | An 11-Year Surveillance of HIV Type 1 Subtypes in Nagoya, Japan | AIDS Res. Hum. Retroviruses 25 (1), 15-21 (2009) | 2e-52 | 107 107PR 107RT |
107 107PR |
100 | HIVDB |
| Fukasawa (1999) | SEQUENCE of simian immunodeficiency virus from African green monkey, a new member of the HIV/SIV group | Nature 333 (6172), 457-461 (1988) | 1e-109 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Fumin (2002) | CLONING and Characterization of a Virtually Full-Length HIV-1 Genome of a Prevalent Subtype B-Thai Strain in Central China | Unpublished | 1e-162 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Fun (2012) | Mutation Q95K enhances N155H-mediated integrase inhibitor resistance and improves viral replication capacity | J. Antimicrob. Chemother. 65 (11), 2300-2304 (2010 | 1e-164 | |
5 5IN |
0 | Pending |
| Gafarova (2008) | Direct Submission | Submitted (19-NOV-2008) Biotechnology, The D.I. Iv | 1e-166 | |
44 1PR 43IN |
0 | Unpublished |
| Gafarova (2009) | The sequence of fragment of HIV-1 subtype G pol gene from Russia patient 0110 | Unpublished | 1e-177 | |
2 1RT 1IN |
0 | Case report(s) / study subset |
| Gafarova (2009) | Full sequence of HIV-1 subtype G protease gene, isolated from Russia patient 104 | Unpublished | 5e-49 | |
1 1PR |
0 | Case report(s) / study subset |
| Galkin (2004) | FULL-LENGTH Genomic Sequencing and Analysis of Four HIV Type 1 Subtype B Isolates Circulating in the Territory of Russia | AIDS Res. Hum. Retroviruses 22 (11), 1192-1197 (2006) | 0 | 4 4PR 4RT 4IN |
4 3PR 4RT 4IN |
100 | HIVDB |
| Galkin (2006) | SEQUENCING and analysis of full-length HIV-1 CRF06_cpx isolate from Russia | Unpublished | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Galkin (2009) | The study of long-term HAART treatment effect for resistance-connected alterations in HIV-1 subtype B genes of 4 Austrian IDU patients | Unpublished | 0 | |
3 2PR 3RT 3IN |
0 | Case report(s) / study subset |
| Gallant (2005) | EARLY Virologic Non-Response to Tenofovir, Abacavir, and Lamivudine in HIV-Infected Antiretroviral Naive Subjects | J. Infect. Dis. (2005) In press | 1e-173 | 41 41PR 41RT |
41 41PR 41RT |
100 | HIVDB |
| Galli (2007) | RECOMBINATION analysis and structure prediction show correlation between breakpoint clusters and RNA hairpins in the pol gene of human immunodeficiency virus type 1 unique recombinant forms | J. Gen. Virol. 89 (PT 12), 3119-3125 (2008) | 1e-133 | |
28 27PR 4RT |
0 | Pending |
| Galluzzo (2012) | Antiretroviral resistance mutations in untreated pregnant women with HIV infection in Uganda and Rwanda | AIDS Res. Hum. Retroviruses 23 (11), 1449-1451 (20 | 4e-50 | 2 2PR |
2 2PR |
100 | HIVDB |
| Galluzzo (2012) | Antiretroviral resistance mutations in untreated pregnant women with HIV infection in Uganda and Rwanda | AIDS Res. Hum. Retroviruses 23 (11), 1449-1451 (20 | 3e-48 | 1 1PR |
1 1PR |
100 | HIVDB |
| Gandhi (2008) | ROLE of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors | J. Virol. 82 (6), 3125-3130 (2008) | 0.027 | |
1 1IN |
0 | Gene fragment(s) |
| Gao (2001) | RECOMBINATION in human immunodefeciency virus type 2 | Unpublished | 1e-100 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Gao (2003) | COMPLETE genomes of HIV-1 subtype C viruses in South Africa | Unpublished | 0 | |
2 2PR 2RT 2IN |
0 | Laboratory/experimental isolate |
| Gao (1999) | ORIGIN of HIV-1 in the chimpanzee Pan troglodytes troglodytes | Nature 397 (6718), 436-441 (1999) | 1e-155 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Gao (1996) | MOLECULAR cloning and analysis of functional envelope genes from human immunodeficiency virus type 1 sequence subtypes A through G. The WHO and NIAID Networks for HIV Isolation and Characterization | J. Virol. 70 (3), 1651-1667 (1996) | 1e-162 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Gao (1996) | THE heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin | J. Virology 70 (10), 7013-7029 (1996) | 1e-164 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Gao (1998) | AN isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I) | J. Virol. 72 (12), 10234-10241 (1998) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Gao (1998) | A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1 | J. Virol. 72 (7), 5680-5698 (1998) | 1e-166 | 8 8PR 8RT 8IN |
8 8PR 8RT 8IN |
100 | HIVDB |
| Gao (2001) | MOLECULAR characterization of a highly divergent HIV type 1 isolate obtained early in the AIDS epidemic from the Democratic Republic of Congo | AIDS Res. Hum. Retroviruses 17 (12), 1217-1222 (2001) | 1e-166 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Gao (2001) | EVIDENCE of two distinct subsubtypes within the HIV-1 subtype A radiation | AIDS Res. Hum. Retroviruses 17 (8), 675-688 (2001) | 1e-164 | 6 5PR 5RT 6IN |
10 9PR 6RT 6IN |
60 | HIVDB |
| Gao (1992) | HUMAN infection by genetically diverse SIVSM-related HIV-2 in west Africa | Nature 358 (6386), 495-499 (1992) | 5e-66 | 3 3RT |
16 16RT 16IN |
18 | HIVDB |
| Gao (1993) | GENETIC typing of HIV-2 from a Senegalese/German heterosexual transmission | AIDS Res. Hum. Retroviruses 9 (7), 703-704 (1993) | 2e-64 | |
2 2RT 2IN |
0 | Case report(s) / study subset |
| Gao (1994) | GENETIC diversity of human immunodeficiency virus type 2: evidence for distinct sequence subtypes with differences in virus biology | J. Virol. 68 (11), 7433-7447 (1994) | 1e-111 | 2 2RT |
6 6RT 4IN |
33 | HIVDB |
| Garaev (2006) | 5' region of HIV-1 G subtype pol gene | Unpublished | 1e-163 | |
79 3PR 79RT |
0 | Pending |
| Garaev (2007) | DIRECT Submission | Submitted (08-NOV-2006) Biotechnology, The D.I. Ivanovsky In | 1e-161 | |
13 2PR 12RT |
0 | Unpublished |
| Garcia-Arriaza (2007) | CHARACTERIZATION of minority subpopulations in the mutant spectrum of HIV-1 quasispecies by successive specific amplifications | Virus Res. 129 (2), 123-134 (2007) | 2e-50 | |
3 3PR |
0 | Case report(s) / study subset |
| Garcia-Bujalance (2005) | COMPARISON between Sequence Analysis and a Line Probe Assay for Testing Genotypic Resistance of Human Immunodeficiency Virus Type 1 to Antiretroviral Drugs | J. Clin. Microbiol. 43 (8), 4186-4188 (2005) | 1e-123 | 94 40PR 54RT |
94 40PR 54RT |
100 | HIVDB |
| Garcia-Lerma (2001) | INCREASED ability for selection of zidovudine resistance in a distinct class of wild-type HIV-1 from drug-naive persons | Proc. Natl. Acad. Sci. U.S.A. 98 (24), 13907-13912 (2001) | 5e-89 | |
7 7RT |
0 | Case report(s) / study subset |
| Garcia-Lerma (2004) | TRANSMITTED Human Immunodeficiency Virus Type 1 Carrying the D67N or K219Q/E Mutation Evolves Rapidly to Zidovudine Resistance In Vitro and Shows a High Replicative Fitness in the Presence of Zidovudine | J. Virol. 78 (14), 7545-7552 (2004) | 1e-142 | |
6 6RT |
0 | Case report(s) / study subset |
| Garcia-Vallejo (2009) | Molecular epidemiology of Human immunodeficiency virus (HIV-1) antiviral resistance in isolates from patient of Colombian Caribbean Region | Unpublished | 0 | |
107 48PR 59RT |
0 | Unpublished |
| Garcia-Vallejo (2009) | First Report of Human Immunodeficiency Virus type 2 (HIV-2) Infection in the Colombian Caribbean Region | Unpublished | 0 | |
3 3RT |
0 | Unpublished |
| Garrido (2009) | Integrase variability and susceptibility to HIV integrase inhibitors: impact of subtypes, antiretroviral experience and duration of HIV infection | J. Antimicrob. Chemother. 65 (2), 320-326 (2010) | 1e-166 | 418 418IN |
418 418IN |
100 | HIVDB |
| Garrido (2010) | Dynamics in the selection of resistance mutations in HIV patients failing Raltegravir and following its discontinuation | Unpublished | 1e-166 | |
53 53IN |
0 | Unpublished |
| Garrido (2012) | Broad Phenotypic Cross-Resistance to Elvitegravir in HIV-Infected Patients Failing on Raltegravir-Containing Regimens | Antimicrob. Agents Chemother. 56 (6), 2873-2878 (2 | 1e-166 | 61 61IN |
62 62IN |
98 | HIVDB |
| Garriga (2010) | HIV-1 reverse transcriptase thumb subdomain polymorphisms associated with virological failure to nucleoside drug combinations | J. Antimicrob. Chemother. 64 (2), 251-258 (2009) | 0 | |
153 76PR 147RT |
0 | Pending |
| Gashnikova (2011) | Biological and Genetic Characterization of HIV-1 Strains Circulating in Siberia, Russia | Unpublished | 1e-176 | |
30 10PR 29RT |
0 | Unpublished |
| Gaspareto (2012) | Genetic diversity and primary resistance among HIV-1-positive patients from Maringa, Parana, Brazil. | Rev Inst Med Trop Sao Paulo | 1e-51 | 14 14PR |
14 14PR |
100 | HIVDB |
| Gatanaga (1999) | ACTIVE HIV-1 redistribution and replication in the brain with HIV encephalitis | Arch. Virol. 144 (1), 29-43 (1999) | 1e-52 | |
261 261RT |
0 | Evolution/quasispecies study |
| Gatanaga (1999) | ANTI-HIV effect of saquinavir combined with ritonavir is limited by previous long-term therapy with protease inhibitors | AIDS Res. Hum. Retroviruses 15 (17), 1493-1498 (1999) | 1e-126 | 15 15PR |
15 15PR |
100 | HIVDB |
| Gatanaga (2000) | DISCORDANCE between plasma- and PBMC-derived HIV-1 genotypes on protease inhibitor resistance | Unpublished | 1e-130 | |
70 70PR |
0 | ARV Rx and/or other data are N/A |
| Gatanaga (2011) | Drug-resistant HIV-1 prevalence in patients newly diagnosed with HIV/AIDS in Japan | Antiviral Res. 75 (1), 75-82 (2007) | 1e-165 | 452 452PR 418RT |
452 407PR 193RT |
100 | HIVDB |
| Geels (2003) | IDENTIFICATION of Sequential Viral Escape Mutants Associated with Altered T-Cell Responses in a Human Immunodeficiency Virus Type 1-Infected Individual | J. Virol. 77 (23), 12430-12440 (2003) | 0 | |
7 7PR 7RT 7IN |
0 | Case report(s) / study subset |
| Geels (2005) | DIFFERENTIAL loss of human immunodeficiency virus type I (HIV-1)-specific T-helper responses in two HIV-1 infected individuals following CTL escape | Unpublished | 0 | |
5 5PR 5RT 5IN |
0 | Case report(s) / study subset |
| Gendelman (1987) | MOLECULAR characterization of a polymerase mutant human immunodeficiency virus | Virology 191 (1), 529 (1992) | 1e-98 | |
3 3RT |
0 | Laboratory/experimental isolate |
| Geng (2010) | Indinavir resistance pathway in one human immunodeficiency virus type 1 infected patient revealed by single-genome amplification | Unpublished | 0 | |
169 10PR 169RT |
0 | Case report(s) / study subset |
| Georges-Courbot (1998) | NATURAL infection of a household pet red-capped mangabey (Cercocebus torquatus torquatus) with a new simian immunodeficiency virus | J. Virol. 72 (1), 600-608 (1998) | 5e-71 | |
1 1IN |
0 | Pending |
| Ghosh (1998) | HUMAN Immunodeficiency Virus type 1 complete genomic sequence | Unpublished | 1e-164 | |
1 1PR 1RT 1IN |
0 | Unpublished |
| Ghosh (1993) | A molecular clone of HIV-1 tropic and cytopathic for human and chimpanzee lymphocytes | Virology 194 (2), 858-864 (1993) | 1e-164 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Giri (2000) | CASE report of a novel amino acid deletion in codon 67 and T69G substitution in the RT of HIV-1 | Unpublished | 2e-76 | |
2 2RT |
0 | Case report(s) / study subset |
| Gittens (2002) | THE Molecular Epidemiology and Drug Resistance Determination of HIV Type 1 Subtype B Infection in Barbados | AIDS Res. Hum. Retroviruses 19 (4), 313-319 (2003) | 1e-126 | 27 27PR |
71 27PR 44RT |
38 | HIVDB |
| Giuliani (2008) | NON-B HIV Type 1 Subtypes among Men Who Have Sex with Men in Rome, Italy | AIDS Res. Hum. Retroviruses 25 (2), 157-164 (2009) | 0 | |
116 64PR 116RT |
0 | Pending |
| Glenn (2006) | A single amino acid change in gp41 is linked to the macrophage-only replication phenotype of a molecular clone of simian immunodeficiency virus derived from the brain of a macaque with neuropathogenic infection | Virology 325 (2), 297-307 (2004) | 8e-19 | |
1 1IN |
0 | Laboratory/experimental isolate |
| Goldberg (2009) | Coinfection of Ugandan red colobus (Procolobus [Piliocolobus] rufomitratus tephrosceles) with novel, divergent delta-, lenti-, and spumaretroviruses | J. Virol. 83 (21), 11318-11329 (2009) | 2e-45 | |
3 3IN |
0 | Gene fragment(s) |
| Goldsamt (2011) | Prevalence of sexually-acquired antiretroviral drug resistance in a community sample of HIV-positive MSM in New York City | AIDS Patient Care STDS (2011) | 9e-52 | |
115 115PR |
0 | Pending |
| Gomez-Carrillo (2004) | DRUG Resistance Testing Provides Evidence of the Globalization of HIV Type 1: A New Circulating Recombinant Form | AIDS Res. Hum. Retroviruses 20 (8), 885-888 (2004) | 0 | 589 589PR 589RT |
589 589PR 589RT |
100 | HIVDB |
| Gomez-Carrillo (2006) | ANALYSIS of HIV Type 1 Diversity in Pregnant Women from Four Latin American and Caribbean Countries | AIDS Res. Hum. Retroviruses 22 (11), 1186-1191 (2006) | 0 | |
121 94PR 121RT |
0 | Pending |
| Gonsalez (2011) | Drug resistance among chronic HIV-1-infected patients naive for use of anti-retroviral therapy in Sao Paulo city. | Virus Res | 1e-149 | 13 13PR 13RT |
14 12PR 8RT |
92 | HIVDB |
| Gonzales (2002) | EXTENDED spectrum of HIV-1 reverse transcriptase mutations in patients receiving multiple nucleoside analog inhibitors | AIDS 17 (6), 791-799 (2003) | 2e-97 | 286 286RT |
287 287RT |
99 | HIVDB |
| Gonzales (2003) | PROTEASE and Reverse Transcriptase Mutation Patterns in HIV Type 1 Isolates from Heavily Treated Persons: Comparison of Isolates from Northern California with Isolates from Other Regions | AIDS Res. Hum. Retroviruses 19 (10), 909-915 (2003) | 1e-173 | 99 38PR 61RT |
100 38PR 62RT |
99 | HIVDB |
| Gonzales (2003) | COLINEARITY of reverse transcriptase inhibitor resistance mutations detected by population-based sequencing | J. Acquir. Immune Defic. Syndr. 34 (4), 398-402 (2003) | 0 | 43 7PR 36RT |
82 8PR 75RT |
52 | HIVDB |
| Gonzalez Perez (2003) | EPIDEMIOLOGICAL and molecular characteristics of HIV and HTLV infection in Equatorial Guinea | Unpublished | 1e-169 | 41 41RT |
41 14PR 41RT |
100 | HIVDB |
| Gonzalez (2009) | Short communication: antiretroviral therapy resistance mutations present in the HIV type 1 subtype C pol and env regions from therapy-naive patients in Zambia. | ARHR | 1e-175 | 67 67PR 67RT |
67 1PR 66RT |
100 | HIVDB |
| Gonzalez (2004) | DETECTION of Human Immunodeficiency Virus Type 1 Antiretroviral Resistance Mutations by High-Density DNA Probe Arrays | J. Clin. Microbiol. 42 (7), 2907-2912 (2004) | 0 | |
178 89PR 91RT |
0 | ARV Rx and/or other data are N/A |
| Gonzalez (2010) | Short communication: antiretroviral therapy resistance mutations present in the HIV type 1 subtype C pol and env regions from therapy-naive patients in Zambia | AIDS Res. Hum. Retroviruses 26 (7), 795-803 (2010) | 1e-171 | 55 55PR 55RT |
55 13PR 55RT |
100 | HIVDB |
| Gonzalez-Alba (2011) | Molecular Surveillance of HIV-1 in Madrid, Spain: a Phylogeographic Analysis | J. Virol. 85 (20), 10755-10763 (2011) | 0 | |
63 11PR 63RT |
0 | Pending |
| Gonzalez-Serna (2012) | Direct Submission | Submitted (15-MAY-2012) Laboratory Program, BC CfE | 1e-163 | |
2 2IN |
0 | Unpublished |
| Gordon (2002) | MOLECULAR characteristics of human immunodeficiency virus type 1 subtype C viruses from KwaZulu-Natal, South Africa: implications for vaccine and antiretroviral control strategies | J. Virol. 77 (4), 2587-2599 (2003) | 2e-99 | 72 72PR 72RT |
75 75PR 75RT |
96 | HIVDB |
| Gottlieb (2009) | Emergence of multiclass drug-resistance in HIV-2 in antiretroviral-treated individuals in Senegal: implications for HIV-2 treatment in resource-limited west Africa | Clin. Infect. Dis. 48, 476-483 (2009) | 0 | |
169 169RT |
0 | Pending |
| Gottlieb (2011) | HIV-2 Integrase Variation in Integrase Inhibitor-Naive Adults in Senegal, West Africa | PLoS ONE 6 (7), E22204 (2011) | 1e-101 | |
122 122IN |
0 | Pending |
| Goujon (2000) | PHYLOGENETIC analyses indicate an atypical nurse-to-patient transmission of human immunodeficiency virus type 1 | J. Virol. 74 (6), 2525-2532 (2000) | 1e-137 | |
124 124RT |
0 | Case report(s) / study subset |
| Graf (1998) | CLONING and characterization of a virtually full-length HIV type 1 genome from a subtype B'-Thai strain representing the most prevalent B-clade isolate in China | AIDS Res. Hum. Retroviruses 14 (3), 285-288 (1998) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Graf (2011) | HIV-1 genetic diversity and drug resistance among treatment naive patients from Southern Brazil: An association of HIV-1 subtypes with exposure categories | J. Clin. Virol. 51 (3), 186-191 (2011) | 0 | 154 73PR 73RT 81IN |
154 7PR 73RT 81IN |
100 | HIVDB |
| Grant (2002) | ACCURACY of the TRUGENE HIV-1 Genotyping Kit | J. Clin. Microbiol. 41 (4), 1586-1593 (2003) | 1e-128 | |
18 9PR 9RT |
0 | Case report(s) / study subset |
| Green (2011) | Drug Resistance and Coreceptor Usage in HIV Type 1 Subtype C-Infected Children Initiating or Failing Highly Active Antiretroviral Therapy in South Africa | AIDS Res. Hum. Retroviruses (2011) In press | 0 | 54 54PR 54RT |
54 15PR 54RT |
100 | HIVDB |
| Grisson (2004) | INFECTIOUS molecular clone of a recently transmitted pediatric human immunodeficiency virus clade C isolate from Africa: evidence of intraclade recombination | J. Virol. 78 (24), 14066-14069 (2004) | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Grossman (2004) | MUTATION D30N Is Not Preferentially Selected by Human Immunodeficiency Virus Type 1 Subtype C in the Development of Resistance to Nelfinavir | Antimicrob. Agents Chemother. 48 (6), 2159-2165 (2004) | 4e-50 | 100 100PR |
100 100PR |
100 | HIVDB |
| Guillon (1996) | COMPLETION of nucleotide sequences of non-syncytium-inducing and syncytium-inducing HIV type 1 variants isolated from the same patient | AIDS Res. Hum. Retroviruses 11 (12), 1537-1541 (1995) | 1e-165 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Guimaraes (2008) | IDENTIFICATION of two new CRF_BF in Rio de Janeiro State, Brazil | AIDS 22 (3), 433-435 (2008) | 0 | |
7 7RT 7IN |
0 | Case report(s) / study subset |
| Guimaraes (2009) | Close phylogenetic relationship between Angolan and Romanian HIV-1 subtype F1 isolates | Retrovirology 6, 39 (2009) | 0 | 9 4PR 9RT 4IN |
9 9RT 4IN |
100 | HIVDB |
| Guimaraes (2010) | Analysis of HIV-1 BF pr/rt recombinant strains from Rio de Janeiro/Brazil reveals multiple unrelated mosaic structures | Infect. Genet. Evol. (2010) In press | 1e-167 | |
24 24IN |
0 | Pending |
| Gunthard (1998) | HUMAN immunodeficiency virus replication and genotypic resistance in blood and lymph nodes after a year of potent antiretroviral therapy | J. Virol. 72 (3), 2422-2428 (1998) | 1e-128 | |
50 34PR 50RT |
0 | Evolution/quasispecies study |
| Gunthard (1999) | HIGHER selection pressure from antiretroviral drugs in vivo results in increased evolutionary distance in HIV-1 pol | Virology 259 (1), 154-165 (1999) | 1e-130 | |
72 72PR 72RT |
0 | DNAChip |
| Guo (2008) | First detection of a novel HIV Type 1 CRF01_AE/07_BC recombinant among an epidemiologically linked cohort of IDUs in Jiangsu, China. | ARHR | 1e-168 | 11 11PR 11RT |
12 11PR 8RT |
91 | HIVDB |
| Guo (2008) | Near Full-Length Genome Characterization of an HIV Type 1 CRF01_AE Strain from China | Unpublished | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Guo (2009) | First detection of a novel HIV Type 1 CRF01_AE/07_BC recombinant among an epidemiologically linked cohort of IDUs in Jiangsu, China | AIDS Res. Hum. Retroviruses 25 (4), 463-467 (2009) | 0 | 3 3PR 3RT 1IN |
3 1PR 3RT 1IN |
100 | HIVDB |
| Gupta (2008) | GENETIC Variations in the Vif Gene from HIV-1 Infected Individuals from North India | Unpublished | 0.028 | |
4 4IN |
0 | Gene fragment(s) |
| Gupta (2008) | EVIDENCE for HIV-1 gag as a determinant of susceptibility to protease inhibitors using a full length subtype A and C gag-protease | AIDS. 2010 Jul 17;24(11):1651-5. | 0 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Gupta (2000) | CLONING and Sequencing of HIV-1 Gag (B-subtype) from Indian Strain | Unpublished | 1e-16 | |
1 1PR |
0 | Gene fragment(s) |
| Gurgo (1988) | ENVELOPE sequences of two new United States HIV-1 isolates | Virology 164 (2), 531-536 (1988) | 1e-161 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Gurtler (1994) | A new subtype of human immunodeficiency virus type 1 (MVP-5180) from Cameroon | J. Virol. 68 (3), 1581-1585 (1994) | 1e-144 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Gurusinghe (1995) | REVERSE transcriptase mutations in sequential HIV-1 isolates in a patient with AIDS | J. Med. Virol. 46 (3), 238-243 (1995) | 1e-89 | |
7 7RT |
0 | Case report(s) / study subset |
| Gutierrez (2003) | PREVALENCE of HIV-1 non-B subtypes, syphilis, HTLV, and hepatitis B and C viruses among immigrant sex workers in Madrid, Spain | J. Med. Virol. 74 (4), 521-527 (2004) | 2e-49 | |
1 1PR |
0 | Case report(s) / study subset |
| Hachiya (2001) | RAPID and simple phenotypic assay for drug susceptibility of human immunodeficiency virus type 1 using CCR5-expressing HeLa/CD4(+) cell clone 1-10 (MAGIC-5) | Antimicrob. Agents Chemother. 45 (2), 495-501 (2001) | 1e-123 | |
45 25PR 20RT |
0 | ARV Rx and/or other data are N/A |
| Hachiya (2007) | A novel mutation, N348I, in HIV-1 Reverse transcriptase confers 2-class cross resistance for RTIs | Unpublished | 0 | |
16 16RT |
0 | Pending |
| Hachiya (2010) | A novel mutation, K70Q, in HIV-1 reverse transcriptase with Q151M enhances resistance to nucleoside RT inhibitors that remain active to Q151M complex | Unpublished | 0 | 2 2RT |
2 2RT |
100 | HIVDB |
| Haddad (2000) | EVIDENCE for late stage compartmentalization of HIV-1 resistance mutations between lymph node and peripheral blood mononuclear cells | AIDS 14 (15), 2273-2281 (2000) | 4e-96 | |
55 55RT |
0 | Evolution/quasispecies study |
| Haddad (2012) | Monogram Integrase Sequences | Unpublished | 1e-164 | |
8 8IN |
0 | Unpublished |
| Hahn (1990) | MOLECULAR characterization of an attenuated human immunodeficiency virus type 2 isolate | Unpublished (1990) | 6e-99 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Hamers (2010) | HIV-1 Drug Resistance Mutations Are Present in Six Percent of Persons Initiating Antiretroviral Therapy in Lusaka, Zambia | J. Acquir. Immune Defic. Syndr. 55 (1), 95-101 (20 | 0 | 537 537PR 536RT |
537 44PR 530RT |
100 | HIVDB |
| Hamers (2011) | HIV-1 drug resistance in antiretroviral-naive individuals in sub-Saharan Africa after rollout of antiretroviral therapy: a multicentre observational study | Lancet Infect Dis 11 (10), 750-759 (2011) | 0 | 1811 1811PR 1811RT |
1811 375PR 1781RT |
100 | HIVDB |
| Hamers (2012) | Effect of pretreatment HIV-1 drug resistance on immunological, virological, and drug-resistance outcomes of first-line antiretroviral treatment in sub-Saharan Africa: a multicentre cohort study. | Lancet Infect Dis. 2012 Apr; | 0 | |
128 28PR 123RT |
0 | Pending |
| Hamers (2012) | Patterns of HIV-1 Drug Resistance After First-Line Antiretroviral Therapy (ART) Failure in 6 Sub-Saharan African Countries: Implications for Second-Line ART Strategies | Clin. Infect. Dis. (2012) In press | 0 | 99 99PR 99RT |
99 16PR 88RT |
100 | HIVDB |
| Hamers (2012) | Patterns of HIV-1 drug resistance after first-line antiretroviral therapy (ART) failure in 6 sub-Saharan African countries: implications for second-line ART strategies | Clin. Infect. Dis. 54 (11), 1660-1669 (2012) | 1e-172 | 1 1PR 1RT |
1 1RT |
100 | HIVDB |
| Hamilton (2010) | Analysis of protease and reverse transcriptase genes of HIV for antiretroviral drug resistance in Jamaican adults | Unpublished | 1e-149 | |
92 85PR 22RT |
0 | Pending |
| Hamkar (2010) | Assessing subtype and drug-resistance-associated mutations among antiretroviral-treated HIV-infected patients | AIDS 24 SUPPL 2, S85-S91 (2010) | 0 | 28 28PR 28RT |
28 1PR 27RT |
100 | HIVDB |
| Han (2006) | Genotypic resistance mutations to antiretroviral drugs in treatment-naive HIV/AIDS patients living in Liaoning Province, China: baseline prevalence and subtype-specific difference. | ARHR | 1e-170 | 88 88PR 72RT |
88 74PR 72RT |
100 | HIVDB |
| Han (2012) | Genome Sequences of a Novel HIV-1 Circulating Recombinant Form CRFxx_01B Disseminating among Men-who-have-sex-with-men in China | Unpublished | 0 | |
3 3RT 3IN |
0 | Case report(s) / study subset |
| Han (2009) | Epidemiologic and Genetic Characterization of Human Immunodeficiency Virus Type I Infection In Liaoning Province, China | J Acquir Immune Defic Syndr. 2010 Feb;53 Suppl 1:S27-33. | 1e-163 | 77 61PR 68RT |
79 49PR 64RT |
97 | HIVDB |
| Han (2009) | Molecular analyses confirmed a HIV-1 heterosexual transmission chain in Guangzhou, China | Unpublished | 0 | |
4 2PR 4RT |
0 | Case report(s) / study subset |
| Handema (2002) | PREVALENCE of drug-resistance-associated mutations in antiretroviral drug-naive Zambians infected with subtype C HIV-1 | AIDS Res. Hum. Retroviruses 19 (2), 151-160 (2003) | 3e-88 | 53 25PR 28RT |
53 25PR 28RT |
100 | HIVDB |
| Hanna (2000) | PATTERNS of resistance mutations selected by treatment of human immunodeficiency virus type 1 infection with zidovudine, didanosine, and nevirapine | J. Infect. Dis. 181 (3), 904-911 (2000) | 1e-130 | |
14 14PR 14RT |
0 | ARV Rx and/or other data are N/A |
| Hanna (2002) | DRUG-SELECTED resistance mutations and non-B subtypes in antiretroviral-naive adults with established human immunodeficiency virus infection | J. Infect. Dis. 188 (7), 986-991 (2003) | 1e-126 | 176 88PR 88RT |
176 88PR 88RT |
100 | HIVDB |
| Harrigan (2007) | A 21-Base Pair Insertion/Duplication at Codon 69 of the HIV Type 1 Reverse Transcriptase in a Patient Undergoing Multiple Nucleoside Therapy | AIDS Res. Hum. Retroviruses 23 (7), 895-899 (2007) | 0 | |
10 10RT |
0 | Case report(s) / study subset |
| Harris (2005) | GENOMIC Characterization of a Novel HIV Type 1 B/G Intersubtype Recombinant Strain from an Injecting Drug User in Germany | AIDS Res. Hum. Retroviruses 21 (7), 654-660 (2005) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Harris (2002) | AMONG 46 near full length HIV type 1 genome sequences from Rakai District, Uganda, subtype D and AD recombinants predominate | AIDS Res. Hum. Retroviruses 18 (17), 1281-1290 (2002) | 1e-166 | |
45 45PR 45RT 45IN |
0 | HIVDB |
| Harris (2003) | A cluster of HIV type 1 subtype C sequences from Ethiopia, observed in full genome analysis, is not sustained in subgenomic regions | AIDS Res. Hum. Retroviruses 19 (12), 1125-1133 (2003) | 0 | 6 6PR 6RT 6IN |
6 6PR 6RT 6IN |
100 | HIVDB |
| Hase (2010) | The different trend in epidemiology of HIV-1 in a local cohort within Japan | Unpublished | 0 | |
94 62PR 69RT |
0 | Unpublished |
| Hasegawa (1989) | GENOMIC divergence of HIV-2 from Ghana | AIDS Res. Hum. Retroviruses 5 (6), 593-604 (1989) | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Hassaine (2000) | CHARACTERIZATION of human immunodeficiency virus type 1 vif gene in long-term asymptomatic individuals | Virology 276 (1), 169-180 (2000) | 0.02 | |
42 42IN |
0 | Gene fragment(s) |
| Hassan (2012) | Low prevalence of transmitted HIV-1 drug resistance amongst ARV naive adults in a rural HIV clinic in Kenya | Unpublished | 0 | 89 89PR 89RT |
89 89RT |
100 | HIVDB |
| Hatano (2009) | Evolution of integrase resistance during failure of integrase inhibitor-based antiretroviral therapy | J. Acquir. Immune Defic. Syndr. (2010) | 1e-167 | 134 134IN |
142 142IN |
94 | HIVDB |
| Hawke (2013) | HIV Non-B Subtype Distribution: Emerging Trends and Risk Factors for Imported and Local Infections Newly Diagnosed in South Australia | AIDS Res. Hum. Retroviruses 29 (2), 311-317 (2013) | 0 | 265 265PR 263RT |
265 263PR 18RT |
100 | HIVDB |
| Hawkins (2009) | Clinical and genotypic findings in HIV-infected patients with the K65R mutation failing first line antiretroviral therapy in Nigeria | J. Acquir. Immune Defic. Syndr. 52, 2 (2010) | 0 | 336 336PR 336RT |
336 4PR 336RT |
100 | HIVDB |
| Held (2007) | CROSS-CLADE inhibition of recombinant human immunodeficiency virus type 1 (HIV-1), HIV-2, and simian immunodeficiency virus SIVcpz reverse transcriptases by RNA pseudoknot aptamers | J. Virol. 81 (10), 5375-5384 (2007) | 0 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Henn (2012) | Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection | PLoS Pathog. 8 (3), E1002529 (2012) | 0 | |
93 67PR 89RT 93IN |
0 | Evolution/quasispecies study |
| Henry (2005) | FACTORS Associated with Time to CD4 Count < 350 cells/mm3 After Treatment Interruption Following Effective Antiretroviral Therapy (ART) +/- Interleukin-2 (IL-2): Results of a Pilot Study (ACTG A5102) | Unpublished | 0 | |
55 47PR 55RT |
0 | Pending |
| Herbeck (2012) | Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes | J. Virol. 85 (15), 7523-7534 (2011) | 0 | |
474 456PR 473RT 474IN |
0 | Evolution/Quasispecies |
| Heredia (1997) | EVIDENCE of HIV-2 infection in Equatorial Guinea (Central Africa): Partial genetic analysis of a B subtype virus | AIDS Res. Hum. Retroviruses 13, 437-439 (1997) | 4.2 | 1 1RT |
1 1RT |
100 | HIVDB |
| Heredia (2001) | GENETIC analysis of an HIV type 2 subtype B virus from a Spanish individual with AIDS | AIDS Res. Hum. Retroviruses 13 (10), 899-900 (1997) | 2e-86 | 1 1RT |
1 1RT |
100 | HIVDB |
| Hermankova (2001) | HIV-1 drug resistance profiles in children and adults with viral load of <50 copies/ml receiving combination therapy | JAMA 286 (2), 196-207 (2001) | 1e-126 | |
47 47PR 47RT |
0 | Evolution/quasispecies study |
| Hernandez-Sanchez (2011) | Genomic Characterization of Mexican Human Immunodeficiency Virus type 1 (HIV-1) isolates | Unpublished | 0 | |
11 10PR 5RT 5IN |
0 | Unpublished |
| Herring (2001) | NATURAL Variation in HIV-1 Integrase | Unpublished | 1e-165 | |
81 81IN |
0 | Unpublished |
| Herring (2005) | POTENTIAL drug resistance polymorphisms in the integrase gene of HIV type 1 subtype A | AIDS Res. Hum. Retroviruses 20 (9), 1010-1014 (2004) | 1e-162 | |
8 8IN |
0 | Case report(s) / study subset |
| Heuverswyn (2007) | GENETIC diversity and phylogeographic clustering of SIVcpzPtt in wild chimpanzees in Cameroon | Virology 368 (1), 155-171 (2007) | 1e-100 | |
8 8IN |
0 | Pending |
| Hierholzer (2002) | HIV type 1 strains from East and West Africa are intermixed in Sudan | AIDS Res. Hum. Retroviruses 18 (15), 1163-1166 (2002) | 1e-130 | 30 30PR 30RT |
30 30PR 30RT |
100 | HIVDB |
| Hierholzer (2003) | MOLECULAR Epidemiology of HIV Type 1 in Ecuador, Peru, Bolivia, Uruguay, and Argentina | AIDS Res. Hum. Retroviruses 18 (18), 1339-1350 (2002) | 1e-164 | 10 10PR 10RT 10IN |
10 10PR 10RT 10IN |
100 | HIVDB |
| Hingankar (2012) | Initial virologic response and HIV drug resistance among HIV-infected individuals initiating first-line antiretroviral therapy at 2 clinics in Chennai and Mumbai, India | Clin. Infect. Dis. 54, S348-S354 (2012) | 0 | 96 96PR 96RT |
105 105RT |
91 | HIVDB |
| Hirano (2010) | Characterization of drug-resistance mutation profile kinetics in HIV-1 with infectious molecular clones | Unpublished | 0 | |
6 6RT 6IN |
0 | Laboratory/experimental isolate |
| Hirigoyen (2005) | USE of Sequence Data Generated in the Bayer TruGene Genotyping Assay To Recognize and Characterize Non-Subtype-B Human Immunodeficiency Virus Type 1 Strains | J. Clin. Microbiol. 43 (10), 5263-5271 (2005) | 1e-144 | |
29 6PR 29RT |
0 | ARV Rx and/or other data are N/A |
| Hirsch (1993) | An African primate lentivirus (SIVsm) closely related to HIV-2. |