Genbank References
BLAST search against GenBank file v. V 185.0 released on 2011-08-15
(search results include 129505 sequences from 1677 references)
| This page contains a list of all GenBank entries on HIV-1 protease, RT and
integrase grouped by reference. The reference may include a published paper or the title provided with the GenBank submission. The purpose of this page is to show which GenBank entries are in the HIV Drug Resistance Database and which aren't. The last column (Annotation) of the table shows whether or not there are plans to add the entry to the database. Each entry in the Annotation column is linked to a page explaining the annotation. The entries were created by performing a BLAST search of the GenBank using the consensus B protease, RT and integrase amino acid sequence (give link to the sequences). The E-value column contains the lowest e-value (best match) for all the GenBank entries associated with a specific reference. The columns, # in GB, # in HIVDB, and % in HIVDB indicate the number of entries in GenBank associated with the reference, the number of these entries that are also in the HIV Drug Resistance Database, and the % of GenBank entries from a particular reference that are in the HIV Drug Resistance Database. For a treatment summary for every isolate in our database and in the GenBank, click here. This file indicates whether or not the person from whom the sequenced virus was obtained had received one or more nucleoside RT inhibitor, nonnucleoside RT inhibitor, or protease inhibitor. |
| Authors | Title | Citation | E-value | # in HIVDB | # in Gb | % in HIVDB | Annotation |
|---|---|---|---|---|---|---|---|
| Abecasis (2007) | RECOMBINATION confounds the early evolutionary history of human immunodeficiency virus type 1: subtype g is a circulating recombinant form | J. Virol. 81 (16), 8543-8551 (2007) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Abecasis (2011) | Molecular epidemiological analysis of paired pol/env sequences from portuguese HIV-1 patients | AIDS Res. Hum. Retroviruses (2011) In press | 0 | |
154 18PR 154RT |
0 | Pending |
| Acharya (2009) | Human immunodeficiency virus type 1 drug resistance mutations in patients from India | Unpublished | 1e-178 | |
1 1RT |
0 | Unpublished |
| Achkar (2004) | INFECTION with group M non-B HIV-1 subtypes in individuals living in New York City | Unpublished | 1e-159 | |
34 34PR 3RT |
0 | ARV Rx and/or other data are N/A |
| Adachi (1986) | PRODUCTION of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone | J. Virol. 59 (2), 284-291 (1986) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Adojaan (2004) | PREDOMINANCE of a Rare Type of HIV-1 in Estonia | J. Acquir. Immune Defic. Syndr. 39 (5), 598-605 (2005) | 0 | 4 4PR 4RT 4IN |
143 142PR 4RT 4IN |
2 | Gene fragment(s) |
| Aghokeng (2007) | FULL-LENGTH sequence analysis of SIVmus in wild populations of mustached monkeys (Cercopithecus cephus) from Cameroon provides evidence for two co-circulating SIVmus lineages | Virology 360 (2), 407-418 (2007) | 0 | 5 3PR 5RT 5IN |
5 5RT 5IN |
100 | HIVDB |
| Aghokeng (2009) | Evaluation of transmitted HIV drug resistance among recently-infected antenatal clinic attendees in four Central African countries | Antivir. Ther. (Lond.) 14 (3), 401-411 (2009) | 0 | 135 135PR 135RT |
135 3PR 135RT |
100 | HIVDB |
| Aghokeng (2010) | Extensive survey on the prevalence and genetic diversity of SIVs in primate bushmeat provides insights into risks for potential new cross-species transmissions | Infect. Genet. Evol. (2009) In press | 0 | |
20 2RT 20IN |
0 | Pending |
| Aghokeng (2010) | Genetic diversity of simian lentivirus in wild De Brazza's monkeys (Cercopithecus neglectus) in Equatorial Africa | J. Gen. Virol. 91 (PT 7), 1810-1816 (2010) | 2e-70 | |
1 1IN |
0 | Pending |
| Aghokeng (2011) | High Failure Rate of the ViroSeq HIV-1 Genotyping System for Drug Resistance Testing in Cameroon, a Country with Broad HIV-1 Genetic Diversity | J. Clin. Microbiol. 49 (4), 1635-1641 (2011) | 1e-176 | |
145 22PR 145RT |
0 | Pending |
| Agneskog (2008) | CHANGES in mutation patterns of a mosaic genome HIV-1 strain after treatment with nucleoside analogs and the integrase inhibitor raltegravir | Unpublished | 1e-173 | |
4 2RT 2IN |
0 | Pending |
| Agwale (2003) | GENOTYPIC and phenotypic analyses of human immunodeficiency virus type 1 in antiretroviral drug-naive nigerian patients | AIDS Res. Hum. Retroviruses 22 (1), 22-26 (2006) | 5e-81 | 18 18PR 18RT |
18 18PR 18RT |
100 | HIVDB |
| Agwu (2008) | Analyses of HIV-1 Drug-Resistance Profiles Among Infected Adolescents Experiencing Delayed Antiretroviral Treatment Switch Following Initial Nonsuppressive Highly Active Antiretroviral Therapy | Unpublished | 1e-155 | |
155 146PR 31RT |
0 | Pending |
| Ahuka-Mundeke (2010) | Full-length genome sequence a of Simian Immunodeficiency Viruses infecting a captive Agile Mangabey (Cercocebus agilis) is closely related to SIVrcm infecting red-capped mangabeys in Cameroon | Unpublished | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Ahumada-Ruiz (2009) | Analysis of HIV-1 pol sequences from Panama: identification of phylogenetic clusters within subtype B and detection of antiretroviral drug resistance mutations | Infect. Genet. Evol. 9 (5), 933-940 (2009) | 0 | |
136 80PR 135RT |
0 | Pending |
| Ait-Khaled (2002) | MUTATIONS in HIV-1 reverse transcriptase during therapy with abacavir, lamivudine and zidovudine in HIV-1-infected adults with no prior antiretroviral therapy | Antivir. Ther. (Lond.) 7 (1), 43-51 (2002) | 1e-98 | 156 156RT |
156 156RT |
100 | HIVDB |
| Albert (1992) | PERSISTENCE of azidothymidine-resistant human immunodeficiency virus type 1 RNA genotypes in posttreatment sera | J. Virol. 66 (9), 5627-5630 (1992) | 5e-55 | 20 20RT |
20 20RT |
100 | HIVDB |
| Albert (1994) | ANALYSIS of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes | J. Virol. 68 (9), 5918-5924 (1994) | 4e-77 | 23 23RT |
26 26RT |
88 | HIVDB |
| Alcalde (2011) | Clinical, epidemiological and molecular features of the HIV-1 subtype C and recombinants forms which is circulating in Sao Paulo city, Brazil | Unpublished | 1e-149 | |
14 12PR 8RT |
0 | Unpublished |
| Alexander (2002) | INHIBITION of Human Immunodeficiency Virus Type 1 (HIV-1) Replication by a Two-Amino-Acid Insertion in HIV-1 Vif from a Nonprogressing Mother and Child | J. Virol. 76 (20), 10533-10539 (2002) | 0.027 | |
1 1IN |
0 | Gene fragment(s) |
| Ali (2010) | Structure-based design, synthesis, and structure-activity relationship studies of HIV-1 protease inhibitors incorporating phenyloxazolidinones | J. Med. Chem. 53 (21), 7699-7708 (2010) | 1e-166 | |
6 3PR 4RT |
0 | Laboratory/experimental isolate |
| Alizon (1986) | GENETIC variability of the AIDS virus: nucleotide sequence analysis of two isolates from African patients | Cell 46 (1), 63-74 (1986) | 1e-165 | 2 1PR 1RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Allan (1993) | SPECIES-SPECIFIC diversity among simian immunodeficiency viruses from African green monkeys | J. Virol. 65 (6), 2816-2828 (1991) | 2e-33 | |
8 8IN |
0 | Laboratory/experimental isolate |
| Allen (2005) | SELECTIVE Escape from CD8+ T-Cell Responses Represents a Major Driving Force of Human Immunodeficiency Virus Type 1 (HIV-1) Sequence Diversity and Reveals Constraints on HIV-1 Evolution | J. Virol. 79 (21), 13239-13249 (2005) | 0 | |
14 14PR 14RT 14IN |
0 | Evolution/quasispecies study |
| Altfeld (2003) | HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus | Nature 420 (6914), 434-439 (2002) | 0 | |
2 2PR 2RT |
0 | Case report(s) / study subset |
| Anderson (2000) | TESTING the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E | J. Virol. 74 (22), 10752-10765 (2000) | 1e-164 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Anderson (1993) | ANALYSIS of envelope changes acquired by SIVmac239 during neuroadaption in rhesus macaques | Virology 195 (2), 616-626 (1993) | 5e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Andersson (1999) | MOLECULAR characterization of HIV-1 and HIV-2 in individuals from Guinea-Bissau with single or dual infections: predominance of a distinct HIV-1 subtype A/G recombinant in West Africa | Virology 261 (1999) In press | 2e-66 | 7 7RT |
7 7RT |
100 | HIVDB |
| Andreani (2008) | CLINICAL evolution and antiretroviral resistance patterns in HIV-1 dual infected patients in Argentina | Unpublished | 1e-151 | |
71 62PR 40RT |
0 | Pending |
| Andresen (2007) | CHARACTERIZATION of Near Full-Length Genomes of HIV Type 1 Strains in Denmark: Basis for a Universal Therapeutic Vaccine | AIDS Res. Hum. Retroviruses 23 (11), 1442-1448 (2007) | 0 | 17 17PR 17RT 17IN |
17 13PR 17RT 17IN |
100 | HIVDB |
| Anta (2010) | Identification of a new HIV-1 circulating recombinant form in Spain | Unpublished | 0 | |
4 4RT |
0 | Unpublished |
| Anton (2004) | GENOTYPIC Resistance to Efavirenz/Protease Inhibitor Regimens | Unpublished | 0 | |
219 219PR 219RT |
0 | ARV Rx and/or other data are N/A |
| Apetrei (1998) | HUMAN immunodeficiency virus type 1 subtype F reverse transcriptase sequence and drug susceptibility | J. Virol. 72 (5), 3534-3538 (1998) | 1e-77 | 14 14RT |
14 14RT |
100 | HIVDB |
| Apetrei (2003) | HIV type 1 diversity in Northeastern Romania in 2000-2001 based on phylogenetic analysis of pol sequences from patients failing antiretroviral therapy | AIDS Res. Hum. Retroviruses 19 (12), 1155-1161 (2003) | 1e-117 | 163 77PR 86RT |
163 77PR 86RT |
100 | HIVDB |
| Apetrei (2004) | DIRECT Inoculation of Simian Immunodeficiency Virus from Sooty Mangabeys in Black Mangabeys (Lophocebus aterrimus): First Evidence of AIDS in a Heterologous African Species and Different Pathologic Outcomes of Experimental Infection | J. Virol. 78 (21), 11506-11518 (2004) | 4e-71 | |
18 18IN |
0 | Laboratory/experimental isolate |
| Apetrei (2005) | MOLECULAR Epidemiology of Simian Immunodeficiency Virus SIVsm in U.S. Primate Centers Unravels the Origin of SIVmac and SIVstm | J. Virol. 79 (14), 8991-9005 (2005) | 4e-90 | 47 47IN |
47 47IN |
100 | HIVDB |
| Apetrei (2006) | POTENTIAL for HIV transmission through unsafe injections | AIDS 20 (7), 1074-1076 (2006) | 1e-148 | |
21 17PR 13RT |
0 | Pending |
| Apetrei (2007) | SIVSMM Subtypes Induce Specific Immunologic and Virologic Changes in Naturally-Infected Sooty Mangabeys | Unpublished | 3e-70 | |
96 96IN |
0 | Pending |
| Arien (2005) | REPLICATIVE fitness of historical and recent HIV-1 isolates suggests HIV-1 attenuation over time | AIDS 19 (15), 1555-1564 (2005) | 0 | 23 23PR 23RT |
23 23RT |
100 | Case report(s) / study subset |
| Arnold (1995) | AT least five HIV-1 sequence subtypes (A, B, C, D, A/E) occur in England | AIDS Res. Hum. Retroviruses 11 (3), 427-429 (1995) | 1e-126 | |
4 4PR |
0 | Case report(s) / study subset |
| Arroyo (2004) | HIV Type 1 Subtypes among Blood Donors in the Mbeya Region of Southwest Tanzania | AIDS Res. Hum. Retroviruses 20 (8), 895-901 (2004) | 0 | 20 20PR 20RT 20IN |
20 20PR 20RT 20IN |
100 | HIVDB |
| Arroyo (2006) | HIV-1 diversity and prevalence differ between urban and rural areas in the Mbeya region of Tanzania | AIDS 19 (14), 1517-1524 (2005) | 0 | 14 14PR 14RT 14IN |
14 8PR 14RT 14IN |
100 | HIVDB |
| Arruda (2009) | Genetic diversity on the integrase region of the pol gene among HIV-1-infected patients naive for integrase inhibitors in Sao Paulo city, Brazil | AIDS Res. Hum. Retroviruses 26, 1 (2010) | 1e-168 | 76 76IN |
76 76IN |
100 | HIVDB |
| Arruda (2010) | Differences in frequencies of pi-resistance mutations from HIV-1 of different subtypes (B, C and F) in a cohort of patients failing arv therapy | Unpublished | 0 | |
869 245PR 787RT |
0 | Pending |
| Atkinson (2000) | CORRELATION between human immunodeficiency virus genotypic resistance and virologic response in patients receiving nelfinavir monotherapy or nelfinavir with lamivudine and zidovudine | J. Infect. Dis. 182 (2), 420-427 (2000) | 1e-123 | 49 49PR |
78 50PR 28RT |
62 | HIVDB |
| Aulicino (2004) | CIRCULATION of novel HIV type 1 A, B/C, and F subtypes in Argentina | AIDS Res. Hum. Retroviruses 21 (2), 158-164 (2005) | 0 | 1 1PR 1RT 1IN |
3 2PR 3RT 1IN |
33 | Case report(s) / study subset |
| Aulicino (2005) | SEQUENCE Analysis of a South American HIV Type 1 BC Recombinant | AIDS Res. Hum. Retroviruses 21 (10), 894-896 (2005) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Aulicino (2009) | HIV-1 non-nucleoside resistance mutations K103N + L100I are strongly associated with nucleoside resistance mutation L74V in BF recombinants from Argentine children under treatment failure, and reduce susceptibility to Etravirine | Antivir Ther. 2010;15(4):641-50 | 3e-52 | |
8 8PR |
0 | Pending |
| Auswinporn (2001) | GENOTYPIC subtyping of the HIV-1 polymerase gene in 30 naave patients from Thailand | Southeast Asian J. Trop. Med. Public Health 32 (2), 346-350 | 1e-121 | 6 6PR 6RT |
27 27PR 27RT |
22 | HIVDB |
| Auwanit (2001) | FULL-LENGTH sequences of two CRF01_ae (subtype e) HIV type 1 isolates from 1995 samples of patients with sexually transmitted diseases in Thailand | AIDS Res. Hum. Retroviruses 17 (9), 867-871 (2001) | 1e-165 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Auwanit (2009) | Detection of drug resistance-associated and background mutations in human immunodeficiency virus type 1 CRF01_AE protease and reverse transcriptase derived from drug treatment-naive patients residing in central Thailand | AIDS Res. Hum. Retroviruses 25 (6), 625-631 (2009) | 1e-149 | 62 43PR 19RT |
106 87PR 19RT |
58 | HIVDB |
| Avi (2009) | Prevalence of Drug Resistance Mutations of Human Immunodeficiency Virus - 1 CRF06_cpx in Treatment-Naive Patients in Estonia in 2008 | Unpublished | 1e-144 | 55 55PR 55RT |
55 55RT |
100 | HIVDB |
| Avi (2009) | Polymorphisms of HIV-1 CRF06_cpx integrases in Estonia | Unpublished | 1e-164 | 112 112IN |
114 114IN |
98 | HIVDB |
| AYEHUMIE (1991) | Unpublished (1991) | 4e-41 | |
8 8PR |
0 | Gene fragment(s) | |
| Ayouba (2009) | Low prevalence of HIV type 1 drug resistance mutations in untreated, recently infected patients from Burkina Faso, Cote d'Ivoire, Senegal, Thailand, and Vietnam: the ANRS 12134 study | AIDS Res. Hum. Retroviruses 25 (11), 1193-1196 (20 | 4e-51 | 105 105PR |
105 105PR |
100 | HIVDB |
| Azevedo-Pereira (1998) | COMPLETE nucleotide sequence of HIV-2ALI, a low infectious isolate with restricted tropism to primary CD4+ cells | Unpublished | 2e-97 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Babic (2005) | PREVALENCE of antiretroviral drug resistance mutations and HIV-1 non-B subtypes in newly diagnosed drug-naive patients in Slovenia, 2000-2004 | Virus Res. 118 (1-2), 156-163 (2006) | 0 | 76 76PR 76RT |
76 63PR 76RT |
100 | HIVDB |
| Babic (2005) | MOLECULAR epidemiology of HIV-1 subtypes based on analysis of pol sequences in Slovenia, 1996-2005 | J. Med. Virol. 78 (8), 997-1002 (2006) | 0 | |
6 3PR 6RT |
0 | Case report(s) / study subset |
| Bacheler (2000) | HUMAN immunodeficiency virus type 1 mutations selected in patients failing efavirenz combination therapy | Antimicrob. Agents Chemother. 44 (9), 2475-2484 (2000) | 1e-130 | 3669 3646PR 3662RT |
3708 3708PR 3708RT |
98 | HIVDB |
| Bacheler (2001) | GENOTYPIC correlates of phenotypic resistance to efavirenz in virus isolates from patients failing nonnucleoside reverse transcriptase inhibitor therapy | J. Virol. 75 (11), 4999-5008 (2001) | 1e-126 | 87 84PR 87RT |
87 84PR 87RT |
100 | HIVDB |
| Badreddine (2007) | IDENTIFICATION and Characterization of HIV Type 1 Subtypes Present in the Kingdom of Saudi Arabia: High Level of Genetic Diversity Found | AIDS Res. Hum. Retroviruses 23 (5), 667-674 (2007) | 0 | 60 6PR 6RT 60IN |
60 6RT 60IN |
100 | HIVDB |
| Baier (1990) | COMPLETE nucleotide sequence of a simian immunodeficiency virus from African green monkeys: a novel type of intragroup divergence | Virology 176 (1), 216-221 (1990) | 1e-109 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Bailey (2007) | EVOLUTION of HIV-1 in an HLA-B*57-Positive Patient during Virologic Escape | J. Infect. Dis. 196 (1), 50-55 (2007) | 0 | |
38 35RT 6IN |
0 | Evolution/quasispecies study |
| Bailey (2008) | TRANSMISSION of Human Immunodeficiency Virus Type 1 from a Patient Who Developed AIDS to an Elite Suppressor | J. Virol. 82 (15), 7395-7410 (2008) | 0 | |
14 7PR 7RT 14IN |
0 | Case report(s) / study subset |
| Balakrishnan (2005) | HIV Type 1 Genotypic Variation in an Antiretroviral Treatment-Naive Population in Southern India | AIDS Res. Hum. Retroviruses 21 (4), 301-305 (2005) | 1e-139 | 49 49PR 49RT |
49 3PR 49RT |
100 | HIVDB |
| Baldanti (2010) | Early emergence of raltegravir resistance mutations in patients receiving HAART salvage regimens | J. Med. Virol. 82 (1), 116-122 (2010) | 1e-156 | 11 11IN |
11 11IN |
100 | HIVDB |
| Baldrich-Rubio (2001) | A complex human immunodeficiency virus type 1 A/G/J recombinant virus isolated from a seronegative patient with AIDS from Benin, West Africa | J. Gen. Virol. 82 (PT 5), 1095-1106 (2001) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Balode (2010) | Direct Submission | Submitted (26-JAN-2010) Department of Virology, Sw | 7e-50 | |
1 1PR |
0 | Unpublished |
| Balode (2010) | Low prevalence of transmitted drug resistance among newly diagnosed HIV-1 patients in Latvia | J. Med. Virol. 82 (12), 2013-2018 (2010) | 1e-148 | 107 107PR 107RT |
107 79PR 67RT |
100 | HIVDB |
| Balode (2010) | Direct Submission | Submitted (26-JAN-2010) Department of Virology, Sw | 1e-143 | |
6 5PR 4RT |
0 | Unpublished |
| Balode (2010) | Low prevalence of transmitted drug resistance among newly diagnosed HIV-1 patients in Latvia | J. Med. Virol. 82 (12), 2013-2018 (2010) | 7e-49 | 2 2PR 2RT |
2 2PR |
100 | HIVDB |
| Balode (2010) | Low prevalence of transmitted drug resistance among newly diagnosed HIV-1 patients in Latvia | J. Med. Virol. 82 (12), 2013-2018 (2010) | 2e-48 | 3 3PR 3RT |
3 3PR |
100 | HIVDB |
| Balotta (2000) | PREVALENCE of transmitted nucleoside analogue-resistant HIV-1 strains and pre-existing mutations in pol reverse transcriptase and protease region: outcome after treatment in recently infected individuals | Antivir. Ther. (Lond.) 5 (1), 7-14 (2000) | 1e-128 | 71 33PR 38RT |
71 33PR 38RT |
100 | HIVDB |
| Balotta (2000) | PREVALENCE of multiple dideoxynucleoside analogue resistance (MddNR) in a multicentric cohort of HIV-1 Italian patients with virologic failure | Unpublished | 1e-133 | 149 132PR 149RT |
157 137PR 157RT |
94 | HIVDB |
| Balotta (2001) | INCREASING prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences | J. Acquir. Immune Defic. Syndr. 27 (5), 499-505 (2001) | 1e-100 | 19 19PR 19RT |
19 19PR 19RT |
100 | HIVDB |
| Bang (2007) | PREVALENCE of primary antiretroviral resistance: trends in Korea | AIDS Res. Hum. Retroviruses 24 (1), 83-85 (2008) | 0 | 81 81PR 81RT |
81 77PR 81RT |
100 | HIVDB |
| Banke (2009) | Positive selection pressure introduces secondary mutations at Gag cleavage sites in human immunodeficiency virus type 1 harboring major protease resistance mutations | J. Virol. 83 (17), 8916-8924 (2009) | 7e-52 | |
268 268PR |
0 | Pending |
| Bao (2008) | MOLECULAR tracing of sexual HIV Type 1 transmission in the southwest border of China | AIDS Res. Hum. Retroviruses 24 (5), 733-742 (2008) | 0 | |
2 1PR 2RT |
0 | Case report(s) / study subset |
| Bar (2010) | Wide variation in the multiplicity of HIV-1 infection among injection drug users | J. Virol. 84 (12), 6241-6247 (2010) | 3e-16 | |
390 390IN |
0 | Evolution/quasispecies study |
| Bar-Magen (2009) | Comparative Biochemical Analysis of HIV-1 Subtype B and C Integrase Enzymes | AIDS. 2010 Sep 10;24(14):2171-9. | 1e-165 | |
2 2IN |
0 | Laboratory/experimental isolate |
| Barditch-Crovo (2001) | PHASE i/ii trial of the pharmacokinetics, safety, and antiretroviral activity of tenofovir disoproxil fumarate in human immunodeficiency virus-infected adults | Antimicrob. Agents Chemother. 45 (10), 2733-2739 (2001) | 4e-96 | 14 14RT |
14 14RT |
100 | HIVDB |
| Barlow (2001) | RECOMBINANT strains of HIV type 1 in the United Kingdom | AIDS Res. Hum. Retroviruses 17 (5), 467-474 (2001) | 1e-109 | |
12 12PR 9RT |
0 | ARV Rx and/or other data are N/A |
| Barlow (2003) | CHARACTERIZATION of a novel simian immunodeficiency virus (SIVmonNG1) genome sequence from a mona monkey (Cercopithecus mona) | J. Virol. 77 (12), 6879-6888 (2003) | 3e-92 | 2 1PR 1RT 2IN |
2 1RT 2IN |
100 | HIVDB |
| Barnett (1993) | DISTINGUISHING features of an infectious molecular clone of the highly divergent and noncytopathic human immunodeficiency virus type 2 UC1 strain | J. Virol. 67 (2), 1006-1014 (1993) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Barnett (1996) | DIRECT Submission | Submitted (11-OCT-1995) Barton Bryant, HIV Database, Los Ala | 2e-98 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Barreto (2006) | TRENDS in Antiretroviral Drug Resistance among HIV-1-Infected Blood Donors in Sao Paulo City, Brazil | Unpublished | 1e-142 | 6 6PR 6RT |
6 4PR 3RT |
100 | HIVDB |
| Barrie (1996) | NATURAL variation in HIV-1 protease, Gag p7 and p6, and protease cleavage sites within gag/pol polyproteins: amino acid substitutions in the absence of protease inhibitors in mothers and children infected by human immunodeficiency virus type 1 | Virology 219 (2), 407-416 (1996) | 1e-126 | |
37 37PR |
0 | Case report(s) / study subset |
| Bartolo (2007) | ANALYSIS of HIV-1 protease and retrotranscriptase in drug-naive patients from Mozambique | Unpublished | 0 | 112 36PR 76RT |
112 36PR 76RT |
100 | HIVDB |
| Bartolo (2007) | MOLECULAR epidemiology of HIV-1 in Angola | Unpublished | 1e-170 | 140 19PR 121RT |
140 19PR 121RT |
100 | HIVDB |
| Bartolo (2008) | MOLECULAR epidemiology of HIV-1 infection in Maputo, Mozambique, and susceptibility to antiretroviral therapy | Unpublished | 1e-165 | 1 1PR 1RT |
1 1RT |
100 | HIVDB |
| Bartolo (2009) | Highly divergent subtypes and new recombinant forms prevail in the HIV/AIDS epidemic in Angola: new insights into the origins of the AIDS pandemic | Infect. Genet. Evol. 9 (4), 672-682 (2009) | 3e-49 | 9 9PR |
9 9PR |
100 | HIVDB |
| Bartolo (2010) | Origin and epidemiological history of CRF14_BG | Unpublished | 0 | 3 3PR 3RT 3IN |
3 3RT 3IN |
100 | HIVDB |
| Baxter (2006) | GENOTYPIC changes in human immunodeficiency virus type 1 protease associated with reduced susceptibility and virologic response to the protease inhibitor tipranavir | J. Virol. 80 (21), 10794-10801 (2006) | 0 | 1531 1531PR 1394RT |
1534 394PR 1397RT |
99 | HIVDB |
| Beck (2007) | OPTIMIZATION of the Oligonucleotide Ligation Assay (OLA), a Rapid and Inexpensive Test for Detection of HIV-1 Drug-Resistance Mutations, for Non-B Subtypes | Unpublished | 8e-53 | |
16 16PR |
0 | Case report(s) / study subset |
| Becker (1995) | MOLECULAR and phylogenetic characterisation of a Guinea-Bissau-derived human immunodeficiency virus type 2 isolate | Unpublished | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Becker-Pergola (2000) | ANALYSIS of HIV type 1 protease and reverse transcriptase in antiretroviral drug-naive Ugandan adults | AIDS Res. Hum. Retroviruses 16 (8), 807-813 (2000) | 1e-115 | 54 27PR 27RT |
54 27PR 27RT |
100 | HIVDB |
| Beer (1999) | SIMIAN immunodeficiency virus (SIV) from sun-tailed monkeys (Cercopithecus solatus): evidence for host-dependent evolution of SIV within the C. lhoesti superspecies | J. Virol. 73 (9), 7734-7744 (1999) | 4e-97 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Beer (2000) | PATTERNS of genomic sequence diversity among their simian immunodeficiency viruses suggest that L'Hoest monkeys (Cercopithecus lhoesti) are a natural lentivirus reservoir | J. Virol. 74 (8), 3892-3898 (2000) | 3e-99 | 3 3PR 3RT 3IN |
3 2PR 3RT 3IN |
100 | HIVDB |
| Beer (2001) | CHARACTERIZATION of novel simian immunodeficiency viruses from red-capped mangabeys from Nigeria (SIVrcmNG409 and -NG411) | J. Virol. 75 (24), 12014-12027 (2001) | 1e-133 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Beerenwinkel (2002) | DIVERSITY and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype | Proc. Natl. Acad. Sci. U.S.A. 99 (12), 8271-8276 (2002) | 1e-126 | |
489 466PR 467RT |
0 | Sequence Quality |
| Bellocchi (2009) | Subtype Analysis and Mutations to Antiviral Drugs in HIV-1-Infected Patients From Mozambique Before Initiation of Antiretroviral Therapy: Results From the DREAM Programme | J Med Virol (2005) | 1e-177 | 59 59PR 59RT |
59 59RT |
100 | HIVDB |
| BENVENISTE (1988) | Unpublished (1990) | 6e-99 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB | |
| Bermudez-Aza (2011) | Antiretroviral resistance in MSM in Brazil | Unpublished | 1e-153 | |
142 100PR 90RT |
0 | Unpublished |
| Bernardin (2003) | PRIMARY Infection of a Male Plasma Donor with Divergent HIV Variants from the Same Source Followed by Rapid Fluctuations in Their Relative Frequency and Viral Recombination | AIDS Res. Hum. Retroviruses 19 (11), 1009-1015 (2003) | 0 | |
3 3PR 3RT 3IN |
0 | Case report(s) / study subset |
| Bernardin (2004) | HUMAN immunodeficiency virus mutations during the first month of infection are preferentially found in known cytotoxic T-lymphocyte epitopes | J. Virol. 79 (17), 11523-11528 (2005) | 0 | 18 18PR 18RT 18IN |
18 18PR 18RT 18IN |
100 | HIVDB |
| Bernardin (2006) | DIRECT Submission | Submitted (12-DEC-2005) Molecular Virology, Blood Systems Re | 0 | 13 13PR 13RT 13IN |
13 13PR 13RT 13IN |
100 | HIVDB |
| Bessong (2004) | CHARACTERIZATION of Human Immunodeficiency Virus Type 1 from a Previously Unexplored Region of South Africa with a High HIV Prevalence | AIDS Res. Hum. Retroviruses 21 (1), 103-109 (2005) | 1e-168 | 26 13PR 13RT |
26 13PR 13RT |
100 | HIVDB |
| Bessong (2005) | RESISTANCE mutational analysis of HIV type 1 subtype C among rural South African drug-naive patients prior to large-scale availability of antiretrovirals | AIDS Res. Hum. Retroviruses 22 (12), 1306-1312 (2006) | 1e-177 | 70 35PR 35RT |
70 35PR 35RT |
100 | HIVDB |
| Bessong (2010) | Analysis of pol integrase gene sequences of HIV-1 infected treatment naive individuals in the Limpopo province of South Africa | Unpublished | 1e-164 | |
89 89IN |
0 | Pending |
| Bibollet-Ruche (1996) | GENETIC diversity of simian immunodeficiency viruses from West African green monkeys: evidence of multiple genotypes within populations from the same geographical locale | J. Virol. 71 (1), 307-313 (1997) | 1e-30 | |
10 10IN |
0 | Gene fragment(s) |
| Bibollet-Ruche (2004) | NEW simian immunodeficiency virus infecting De Brazza's monkeys (Cercopithecus neglectus): evidence for a cercopithecus monkey virus clade | J. Virol. 78 (14), 7748-7762 (2004) | 0 | 4 4PR 4RT 4IN |
11 4PR 6RT 11IN |
36 | HIVDB |
| Bibollet-Ruche (2005) | COMPLETE genome analysis of one of the earliest SIVcpzPtt strains from Gabon (SIVcpzGAB2) | AIDS Res. Hum. Retroviruses 20 (12), 1377-1381 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Bibollet-Ruche (2005) | GENETIC characterization of accessory genes from human immunodeficiency viruses type 1 group O | Unpublished | 3e-08 | |
14 14IN |
0 | Gene fragment(s) |
| Biesinger (2007) | CHANGES in simian immunodeficiency virus reverse transcriptase alleles that appear during infection of macaques enhance infectivity and replication in CD4(+) T cells | Virology 370 (1), 184-193 (2008) | 0 | |
8 8RT |
0 | Case report(s) / study subset |
| Binverted question markelec (2000) | HIGH levels of drug-resistant human immunodeficiency virus variants in patients exhibiting increasing CD4+ T cell counts despite virologic failure of protease inhibitor-containing antiretroviral combination therapy | J. Infect. Dis. 181 (5), 1808-1812 (2000) | 1e-128 | 100 100PR |
100 100PR |
100 | HIVDB |
| Blankson (2007) | ISOLATION and Characterization of Replication-Competent HIV-1 from a Subset of Elite Suppressors | J. Virol. 81 (5), 2508-2518 (2007) | 0 | |
6 4PR 6RT 6IN |
0 | Case report(s) / study subset |
| Blankson (2009) | HIV-1 Evolution Following Transmission to an HLA-B*5801 Positive Subject | J Infect Dis. 2009 Dec 15;200(12):1820-4. | 0 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Bleiber (2001) | INDIVIDUAL contributions of mutant protease and reverse transcriptase to viral infectivity, replication, and protein maturation of antiretroviral drug-resistant human immunodeficiency virus type 1 | J. Virol. 75 (7), 3291-3300 (2001) | 1e-112 | |
21 15PR 15RT |
0 | Case report(s) / study subset |
| Blick (2006) | THE Probable Source of Both the Primary Multidrug-Resistant (MDR) HIV-1 Strain Found in a Patient with Rapid Progression to AIDS and a Second Recombinant MDR Strain Found in a Chronically HIV-1-Infected Patient | J. Infect. Dis. 195 (9), 1250-1259 (2007) | 1e-163 | |
13 1PR 13RT |
0 | Case report(s) / study subset |
| Bobkov (2004) | DIVERSITY of HIV-1 Subtype A and CRF03_AB Protease in Eastern Europe: Selection of the V77I Variant Followed by Its Rapid Spread in IDU Populations | Unpublished | 5e-40 | 27 27PR |
30 30PR |
90 | HIVDB |
| Bodelle (2004) | IDENTIFICATION and Genomic Sequence of an HIV Type 1 Group N Isolate from Cameroon | AIDS Res. Hum. Retroviruses 20 (8), 902-908 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Boeri (2003) | EVOLUTIONARY characteristics of HIV-1 variants resistant to protease inhibitors in the absence of drug-selective pressure | AIDS Res. Hum. Retroviruses (2003) In press | 0 | |
18 18PR 18RT |
0 | Case report(s) / study subset |
| Bogh (2001) | INVESTIGATING association between baseline HIV-1 genotypic resistance and virological response among protease in-hibitor-naive patients treated with HAART | Unpublished | 1e-133 | |
180 112PR 68RT |
0 | Unpublished |
| Bolivar (2009) | The Challenge of HIV-1 Genetic Diversity: Discordant CD4+ T-Cell Count and Viral Load in an Untreated Patient Infected With a Subtype F Strain | J. Acquir. Immune Defic. Syndr. 52 (5), 659-661 (2 | 1e-161 | |
1 1IN |
0 | Case report(s) / study subset |
| Bonhoeffer (2008) | Evidence for positive epistasis in HIV-1 | Science 306 (5701), 1547-1550 (2004) | 1e-175 | 8676 8676PR 8676RT |
8676 5624PR 7806RT |
100 | HIVDB |
| Bonhoeffer (2010) | Evidence for positive epistasis in HIV-1 | Science 306 (5701), 1547-1550 (2004) | 9e-49 | 8 8PR 8RT |
8 8PR |
100 | HIVDB |
| Bontell (2011) | Transmitted drug resistance and phylogenetic analysis of HIV CRF01_AE in Northern Vietnam | Infect. Genet. Evol. (2011) In press | 2e-50 | 32 32PR 32RT |
32 32PR |
100 | HIVDB |
| Bontell (2011) | Transmitted drug resistance and phylogenetic analysis of HIV CRF01_AE in Northern Vietnam | Infect. Genet. Evol. (2011) In press | 2e-48 | 1 1PR 1RT |
1 1PR |
100 | HIVDB |
| Bonura (2010) | Transmission of drug-resistant HIV-1 strains in HAART-naive patients: a five-year retrospective study in Sicily, Italy | Unpublished | 0 | 109 109PR 109RT |
109 41PR 109RT |
100 | HIVDB |
| Bouchard (2004) | HIV Type 1 Drug Resistance among Naive Patients from Venezuela | AIDS Res. Hum. Retroviruses 23 (3), 482-485 (2007) | 1e-140 | 37 17PR 20RT |
37 17PR 20RT |
100 | HIVDB |
| Bourara (2007) | TARGET cell APOBEC3C can induce limited G-to-A mutation in HIV-1 | PLoS Pathog. 3 (10), 1477-1485 (2007) | 4e-52 | |
2 2PR |
0 | Case report(s) / study subset |
| Bouzeghoub (2005) | HIGH Diversity of HIV Type 1 in Algeria | AIDS Res. Hum. Retroviruses 22 (4), 367-372 (2006) | 1e-149 | 248 133PR 116RT |
248 132PR 116RT |
100 | HIVDB |
| Bouzeghoub (2008) | FIRST Observation of HIV Type 1 Drug Resistance Mutations in Algeria | AIDS Res. Hum. Retroviruses 24 (11), 1467-1473 (2008) | 1e-148 | |
37 16PR 21RT |
0 | Pending |
| Brachtel (2002) | DEMONSTRATION of de Novo HIV Type 1 Production by Detection of Multiply Spliced and Unspliced HIV Type 1 RNA in Paraffin-Embedded Tonsils | AIDS Res. Hum. Retroviruses 18 (11), 785-790 (2002) | 1e-62 | |
43 43PR |
0 | Evolution/quasispecies study |
| Bradshaw (2007) | NOVEL Drug Resistance Pattern Associated with the Mutations K70G and M184V in Human Immunodeficiency Virus Type 1 Reverse Transcriptase | Antimicrob. Agents Chemother. 51 (12), 4489-4491 (2007) | 0 | 9 4PR 9RT |
9 9RT |
100 | HIVDB |
| Brandin (2003) | POL Gene Sequence Variation in Swedish HIV-2 Patients Failing Antiretroviral Therapy | AIDS Res. Hum. Retroviruses 19 (7), 543-550 (2003) | 3e-97 | 30 30PR 30RT |
30 30PR 30RT |
100 | HIVDB |
| Brann (2006) | FUNCTIONAL Correlation between a Novel Amino Acid Insertion at Codon 19 in the Protease of Human Immunodeficiency Virus Type 1 and Polymorphism in the p1/p6 Gag Cleavage Site in Drug Resistance and Replication Fitness | J. Virol. 80 (12), 6136-6145 (2006) | 2e-49 | |
1 1PR |
0 | Case report(s) / study subset |
| Brehm (2011) | Failure of initial therapy with two nucleosides and efavirenz is not associated with early emergence of mutations in the C-terminus of HIV-1 reverse transcriptase | J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2 | 0 | |
106 106RT |
0 | Pending |
| Brennan (1997) | GENETIC variation in human immunodeficiency virus type 2: identification of a unique variant from human plasma | AIDS Res. Hum. Retroviruses 13 (5), 401-404 (1997) | 0.27 | 1 1PR 1RT 1IN |
1 1RT |
100 | HIVDB |
| Brennan (2007) | HIV-1 Strains Identified in Brazilian Blood Donors: Significant Prevalence of B/F1 Recombinants | AIDS Res. Hum. Retroviruses 23 (11), 1434-1441 (2007) | 1e-167 | 82 82IN |
85 85IN |
96 | HIVDB |
| Brennan (2009) | The prevalence of diverse HIV-1 strains was stable in Cameroonian blood donors from 1996 to 2004 | J. Acquir. Immune Defic. Syndr. 49 (4), 432-439 (2 | 1e-166 | 572 572IN |
573 573IN |
99 | HIVDB |
| Brennan (2009) | Identification of HIV-1 Non-B Subtypes and Antiretroviral Drug Resistant Strains in United States Blood Donors | Unpublished | 0 | 65 62PR 62RT 3IN |
65 43PR 62RT 3IN |
100 | HIVDB |
| Brennan (2011) | Expanded Evaluation of Blood Donors in the United States for HIV-1 Non-B Subtypes and Antiretroviral Drug Resistant Strains: 2005-2007 | Unpublished | 0 | |
25 8PR 25RT |
0 | Pending |
| Brenner (2006) | HIV-1 subtype C viruses rapidly develop K65R resistance to tenofovir in cell culture | AIDS 20 (9), F9-F13 (2006) | 0 | |
5 3PR 5RT |
0 | Pending |
| Brenner (2006) | HIGH Rates of Forward Transmission Events after Acute/Early HIV-1 Infection | J. Infect. Dis. 195 (7), 951-959 (2007) | 0 | |
24 22PR 12RT |
0 | Case report(s) / study subset |
| Brenner (2010) | HIV-1 Integrase Genotypic Analysis: Implications in the Study of HIV-1 Drug Resistance and Subtype Diversification | Antimicrob. Agents Chemother. (2010) In press | 0 | |
8 7RT 8IN |
0 | Unpublished |
| Brenner (2011) | Subtype diversity associated with the development of HIV-1 resistance to integrase inhibitors | J. Med. Virol. 83 (5), 751-759 (2011) | 1e-167 | |
149 149IN |
0 | Pending |
| Brenner (2011) | Spread of HIV-1 Drug-Resistant Sub-epidemics | Unpublished | 0 | |
1 1RT |
0 | Unpublished |
| Brigido (2005) | SHORT Communication: Molecular Characteristics of HIV Type 1 Circulating in Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 21 (7), 673-682 (2005) | 0 | |
174 68PR 106RT |
0 | Pending |
| Brigido (2008) | HIV type 1 subtype C and CB Pol recombinants prevail at the cities with the highest AIDS prevalence rate in Brazil | AIDS Res. Hum. Retroviruses 23 (12), 1579-1586 (2007) | 0 | 149 103PR 99RT |
149 65PR 97RT |
100 | HIVDB |
| Brigido (2010) | Southern Brazil HIV Type 1 C Expansion into the State of Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 27 (3), 339-344 (2011) | 0 | |
247 192PR 69RT 15IN |
0 | Pending |
| Brindeiro (1999) | SEQUENCE diversity of the reverse transcriptase of human immunodeficiency virus type-1 from Brazilian untreated individuals | Antimicrob. Agents Chemother. (1999) In press | 2e-91 | 18 18RT |
18 18RT |
100 | HIVDB |
| Brindeiro (2003) | BRAZILIAN Network for HIV Drug Resistance Surveillance (HIV-BResNet): a survey of chronically infected individuals | AIDS 17 (7), 1063-1069 (2003) | 1e-145 | 350 199PR 191RT |
357 199PR 199RT |
98 | HIVDB |
| Briones (2000) | DYNAMICS of dominance of a dipeptide insertion in reverse transcriptase of HIV-1 from patients subjected to prolonged therapy | Virus Res. 66 (1), 13-26 (2000) | 1e-128 | |
186 180PR 186RT |
0 | Evolution/quasispecies study |
| Briones (2003) | MEMORY in retroviral quasispecies: experimental evidence and theoretical model for human immunodeficiency virus | J. Mol. Biol. 331 (1), 213-229 (2003) | 1e-126 | |
15 15PR 15RT |
0 | Evolution/quasispecies study |
| Brown (2009) | Phylogenetic reconstruction of transmission events from individuals with acute HIV infection: toward more-rigorous epidemiological definitions | J. Infect. Dis. 199 (3), 427-431 (2009) | 1e-172 | |
160 133PR 77RT |
0 | Evolution/quasispecies study |
| Brown (1999) | SEQUENCE clusters in human immunodeficiency virus type 1 reverse transcriptase are associated with subsequent virological response to antiretroviral therapy | J. Infect. Dis. 180 (4), 1043-1049 (1999) | 1e-130 | |
55 55PR 55RT |
0 | DNAChip |
| Brown (2005) | BIOLOGIC and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines | J. Virol. 79 (10), 6089-6101 (2005) | 0 | 21 21PR 21RT 21IN |
21 21PR 21RT 21IN |
100 | HIVDB |
| Brumme (2007) | EVIDENCE of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1 | PLoS Pathog. 3 (7), E94 (2007) | 0 | 811 811PR 594RT |
811 773PR 594RT |
100 | HIVDB |
| Brumme (2009) | HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins | PLoS ONE 4 (8), E6687 (2009) | 0 | 1139 543PR 537RT 975IN |
1285 415PR 691RT 1129IN |
88 | HIVDB |
| Bruselles (2009) | Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV BF recombinant associated with a fatal primary infection | AIDS Res Hum Retroviruses. 2009 Sep;25(9):937-42. | 0 | |
1 1PR 1RT 1IN |
0 | Pending |
| Buckton (2008) | DEVELOPMENT and optimization of an internally controlled dried blood spot assay for surveillance of human immunodeficiency virus type-1 drug resistance | J. Antimicrob. Chemother. 62 (6), 1191-1198 (2008) | 0 | |
17 17RT |
0 | Case report(s) / study subset |
| Bulgheroni (2001) | UNUSUAL codon 69 insertions: influence on human immunodeficiency virus type 1 reverse transcriptase drug susceptibility | J. Clin. Virol. 29 (1), 27-32 (2004) | 4e-77 | |
3 3RT |
0 | Pending |
| Buonaguro (2006) | SCREENING of HIV-1 isolates by reverse heteroduplex mobility assay and identification of non-B subtypes in Italy | J. Acquir. Immune Defic. Syndr. 37 (2), 1295-1306 (2004) | 0 | |
3 3RT 3IN |
0 | Case report(s) / study subset |
| Burda (2005) | HIV-1 CRF09_cpx circulates in the North West Province of Cameroon where CRF02_AG infections predominate and recombinant strains are common | AIDS Res. Hum. Retroviruses 20 (12), 1358-1363 (2004) | 2e-50 | |
17 17PR |
0 | Sequence quality |
| Burda (2010) | HIV-1 reverse transcriptase drug-resistance mutations in chronically infected individuals receiving or naive to HAART in Cameroon | J. Med. Virol. 82 (2), 187-196 (2010) | 1e-156 | 1 1RT |
1 1RT |
100 | HIVDB |
| Burkala (2005) | COMPARTMENTALIZATION of HIV-1 in the central nervous system: role of the choroid plexus | AIDS 19 (7), 675-684 (2005) | 1e-152 | |
140 123PR 140RT |
0 | Evolution/quasispecies study |
| Burns (2005) | SEQUENCE variability of the integrase protein from a diverse collection of HIV type 1 isolates representing several subtypes | AIDS Res. Hum. Retroviruses 18 (14), 1031-1041 (2002) | 1e-159 | 21 21IN |
21 21IN |
100 | HIVDB |
| Bussmann (2005) | HIV-1 subtype C drug-resistance background among ARV-naive adults in Botswana | Unpublished | 0 | 71 71PR 71RT |
71 64PR 71RT |
100 | HIVDB |
| Buzon (2011) | Combined antiretroviral therapy and immune pressure lead to in vivo HIV-1 recombination with ancestral viral genomes | J. Acquir. Immune Defic. Syndr. (2011) In press | 4e-50 | |
8 8PR |
0 | Evolution/quasispecies study |
| Bychenko (2009) | Isolation and characterization of new HIV-1 subtype A1 strain from Russia, envelope proteins variability analysis | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Byrn (2006) | HIV-1 in semen: an isolated virus reservoir | Lancet 350 (9085), 1141 (1997) | 4e-52 | |
35 35PR |
0 | Evolution/quasispecies study |
| Cabana (1999) | EMERGENCE and genetic evolution of HIV-1 variants with mutations conferring resistance to multiple reverse transcriptase and protease inhibitors | J. Med. Virol. 59 (4), 480-490 (1999) | 1e-125 | 92 54PR 38RT |
92 54PR 38RT |
100 | HIVDB |
| Cabrera (2008) | RALTEGRAVIR Susceptibility and Fitness Progression of HIV-1 Integrase in Patients on Long-Term Antiretroviral Therapy | Unpublished | 1e-167 | 135 135IN |
135 135IN |
100 | HIVDB |
| Calazans (2003) | LOW Accumulation of L90M in Protease from Subtype F HIV-1 with Resistance to Protease Inhibitors Is Caused by the L89M Polymorphism | J. Infect. Dis. 191 (11), 1961-1970 (2005) | 1e-126 | 51 51PR 51RT |
52 52PR 51RT |
98 | HIVDB |
| Cali (2004) | EVIDENCE for host-driven selection of the HIV type 1 vpr gene in vivo during HIV disease progression in a transfusion-acquired cohort | AIDS Res. Hum. Retroviruses 21 (8), 728-733 (2005) | 0 | |
15 15PR 15RT 15IN |
0 | Case report(s) / study subset |
| Calugi (2006) | ENTIRE Genome of a Strain of Human Immunodeficiency Virus Type 1 with a Deletion of nef That Was Recovered 20 Years after Primary Infection: Large Pool of Proviruses with Deletions of env | J. Virol. 80 (23), 11892-11896 (2006) | 0 | |
1 1RT 1IN |
0 | Sequence quality |
| Calvez (2002) | IMPACT of stavudine phenotype and thymidine analogues mutations on viral response to stavudine plus lamivudine in ALTIS 2 ANRS trial | Antivir. Ther. (Lond.) 7 (3), 211-218 (2002) | 2e-94 | |
26 26RT |
0 | ARV Rx and/or other data are N/A |
| Candotti (1999) | AIDS in an HIV-seronegative Ghanaian woman with intersubtype A/G recombinant HIV-1 infection | J. Med. Virol. 62 (1), 1-8 (2000) | 1e-165 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Canducci (2008) | DYNAMIC patterns of Human immunodeficiency virus type 1 (HIV-1) integrase gene evolution in patients failing Raltegravir based salvage therapies | Unpublished | 1e-154 | 37 37IN |
37 37IN |
100 | HIVDB |
| Cao (2007) | HIV subtype distribution in a cohort of HIV infected Ugandans: clinical implications | Unpublished | 0 | 46 45PR 46RT |
46 26PR 46RT |
100 | HIVDB |
| Cardoso (2009) | HIV-1 pol phylogenetic diversity and antiretroviral resistance mutations in treatment naive patients from Central West Brazil | J. Clin. Virol. 46 (2), 134-139 (2009) | 1e-145 | 76 76PR 76RT |
76 76PR 8RT |
100 | HIVDB |
| Cardoso (2009) | High level of multidrug resistance mutations in HIV type 1 pol gene and resistance-associated mutations to enfuvirtide (T-20) among antiretroviral-experienced patients from central Brazil | AIDS Res. Hum. Retroviruses 25 (10), 943-950 (2009 | 1e-145 | 25 25PR 25RT |
25 25PR 1RT |
100 | HIVDB |
| Cardoso (2010) | HIV-1 primary and secondary antiretroviral drug resistance and genetic diversity among pregnant women from central Brazil | J. Med. Virol. 82 (3), 351-357 (2010) | 1e-144 | |
62 62PR 4RT |
0 | Pending |
| Cardoso (2011) | Molecular Characteristics of HIV Type 1 Infection Among Prisoners from Central Western Brazil | AIDS Res. Hum. Retroviruses (2011) In press | 2e-52 | |
18 18PR |
0 | Pending |
| Caride (2000) | DRUG-RESISTANT reverse transcriptase genotyping and phenotyping of B and non-B subtypes (F and A) of human immunodeficiency virus type I found in Brazilian patients failing HAART | Virology 275 (1), 107-115 (2000) | 5e-89 | |
14 14RT |
0 | ARV Rx and/or other data are N/A |
| Caride (2001) | GENOTYPIC and phenotypic evidence of different drug-resistance mutation patterns between B and non-B subtype isolates of human immunodeficiency virus type 1 found in Brazilian patients failing HAART | Virus Genes 23 (2), 193-202 (2001) | 1e-123 | 14 14PR |
28 28PR |
50 | HIVDB |
| Carneiro-Proietti (1997) | DIRECT Submission | Submitted (14-NOV-1996) Lab. Virus, Dept. Microbiologia, Uni | 1e-128 | |
1 1PR |
0 | Case report(s) / study subset |
| Caron (2008) | HUMAN immunodeficiency virus type 1 seroprevalence and antiretroviral drug resistance-associated mutations in miners in Gabon, central Africa | AIDS Res. Hum. Retroviruses 24 (9), 1225-1228 (2008) | 2e-50 | 4 4PR |
4 4PR |
100 | HIVDB |
| Carr (1996) | FULL-LENGTH sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand | J. Virol. 70 (9), 5935-5943 (1996) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Carr (1998) | FULL genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants | Virology 247 (1), 22-31 (1998) | 1e-164 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Carr (1999) | CHARACTERIZATION of subtype A HIV-1 from Africa by full genome sequencing | AIDS 13 (14), 1819-1826 (1999) | 1e-166 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Carr (1999) | DIRECT Submission | Submitted (07-JUL-1998) Molecular Epidemiology, Henry M. Jac | 1e-164 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Carr (2001) | THE AG Recombinant IbNG and Novel Strains of Group M HIV-1 are Common in Cameroon | Virology (2001) In press | 1e-166 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Carr (2001) | DIVERSE BF recombinants have spread widely since the introduction of HIV-1 into South America | AIDS 15 (15), F41-F47 (2001) | 1e-165 | 21 21PR 21RT 21IN |
21 21PR 21RT 21IN |
100 | HIVDB |
| Carr (2004) | OUTBREAK of a West African recombinant of HIV-1 in Tashkent, Uzbekistan | J. Acquir. Immune Defic. Syndr. 39 (5), 570-575 (2005) | 0 | 245 233PR 232RT 12IN |
246 242PR 241RT 12IN |
99 | HIVDB |
| Carr (2005) | HIV Subtype and Drug Resistance Patterns among Drug Naive Persons in Jos, Nigeria | Unpublished | 0 | 23 23PR 23RT 7IN |
23 9PR 23RT 7IN |
100 | HIVDB |
| Carr (2006) | FIRST report of an HIV-1 triple recombinant of subtypes B, C and F in Buenos Aires, Argentina | Unpublished | 0 | 10 10PR 10RT 10IN |
10 9PR 10RT 10IN |
100 | HIVDB |
| Carr (2006) | HIGH Genetic Complexity of HIV-1 in low-prevalence, rural regions of Cameroon | Unpublished | 0 | 2 2PR 2RT 2IN |
2 1PR 2RT 2IN |
100 | HIVDB |
| Carr (2008) | HIV-1 in the Caribbean is Dominated by Subtype B | PLoS One. 2009;4(3):e4814. Epub 2009 Mar 12. | 1e-139 | |
62 59PR 27RT |
0 | Pending |
| Carr (2008) | IDENTIFICATION of CRF17_BF in Four South American Countries | Unpublished | 0 | |
6 1PR 6RT 6IN |
0 | Pending |
| Carr (2008) | HIV-1 Epidemic in the Caribbean is Dominated by Subtype B | Unpublished | 0 | |
15 10PR 15RT 15IN |
0 | Pending |
| Carr (2010) | HIV-1 Recombinants with Multiple Parental Strains in Low-Prevalence, Remote Regions of Cameroon | Retrovirology. 2010 Apr 28;7:39. | 0 | 24 24PR 23RT 24IN |
24 24RT 24IN |
100 | HIVDB |
| Carrera (2010) | Identification of unusual and novel HIV type 1 spliced transcripts generated in vivo | AIDS Res. Hum. Retroviruses 26 (7), 815-820 (2010) | 0.002 | |
1 1IN |
0 | Gene fragment(s) |
| Carrion (2002) | CIRCULATING Recombinant Form CRF02_AG in South America | AIDS Res. Hum. Retroviruses 19 (4), 329-332 (2003) | 1e-163 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Carrion (2004) | DOCUMENTATION of subtype C HIV Type 1 strains in Argentina, Paraguay, and Uruguay | AIDS Res. Hum. Retroviruses 20 (9), 1022-1025 (2004) | 0 | 2 2PR 2RT 2IN |
7 7PR 7RT 2IN |
28 | HIVDB |
| Carrion (2009) | Molecular characterization of the human immunodeficiency virus type 1 among children in Lima, Peru | AIDS Res. Hum. Retroviruses (2009) In press | 1e-173 | |
2 2RT |
0 | Pending |
| Carvalho (2010) | Primary Drug Resistance And HIV-1 Phylogenetic Diversity In North Brazil, Tocantins State | Unpublished | 1e-144 | 30 30PR 30RT |
31 31PR 1RT |
96 | HIVDB |
| Carvalho (2010) | Secondary Drug Resistance And HIV-1 Phylogenetic Diversity In North Brazil, Tocantins State | Unpublished | 4e-51 | |
5 5PR |
0 | Unpublished |
| Carvalho (2011) |