Genbank database V 172.0 released on 2009-06-15 |
|
This page contains a list of all GenBank entries on HIV-1 protease, RT and
integrase grouped by reference. The reference may include a published paper or the title provided with the GenBank submission. The purpose of this page is to show which GenBank entries are in the HIV Drug Resistance Database and which aren't. The last column (Annotation) of the table shows whether or not there are plans to add the entry to the database. Each entry in the Annotation column is linked to a page explaining the annotation. The entries were created by performing a BLAST search of the GenBank using the consensus B protease, RT and integrase amino acid sequence (give link to the sequences). The E-value column contains the lowest e-value (best match) for all the GenBank entries associated with a specific reference. The columns, # in GB, # in HIVDB, and % in HIVDB indicate the number of entries in GenBank associated with the reference, the number of these entries that are also in the HIV Drug Resistance Database, and the % of GenBank entries from a particular reference that are in the HIV Drug Resistance Database. For a treatment summary for every isolate in our database and in the GenBank, click here. This file indicates whether or not the person from whom the sequenced virus was obtained had received one or more nucleoside RT inhibitor, nonnucleoside RT inhibitor, or protease inhibitor. |
References sorted by Author and Year of Publication |
| Authors | Title | Citation | E-value | # in HIVDB | # in Gb | % in HIVDB | Annotation |
|---|---|---|---|---|---|---|---|
| Abecasis (2007) | RECOMBINATION confounds the early evolutionary history of human immunodeficiency virus type 1: subtype g is a circulating recombinant form | J. Virol. 81 (16), 8543-8551 (2007) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Achkar (2004) | INFECTION with group M non-B HIV-1 subtypes in individuals living in New York City | Unpublished | 1e-159 | |
34 34PR 3RT |
0 | ARV Rx and/or other data are N/A |
| Adachi (1986) | PRODUCTION of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone | J. Virol. 59 (2), 284-291 (1986) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Adojaan (2004) | PREDOMINANCE of a Rare Type of HIV-1 in Estonia | J. Acquir. Immune Defic. Syndr. 39 (5), 598-605 (2005) | 0 | 4 4PR 3RT 4IN |
143 142PR 4RT 4IN |
2 | Gene fragment(s) |
| Aghokeng (2007) | FULL-LENGTH sequence analysis of SIVmus in wild populations of mustached monkeys (Cercopithecus cephus) from Cameroon provides evidence for two co-circulating SIVmus lineages | Virology 360 (2), 407-418 (2007) | 0 | 5 3PR 5RT 5IN |
5 5RT 5IN |
100 | HIVDB |
| Agneskog (2008) | CHANGES in mutation patterns of a mosaic genome HIV-1 strain after treatment with nucleoside analogs and the integrase inhibitor raltegravir | Unpublished | 1e-173 | |
4 2RT 2IN |
0 | Pending |
| Agwale (2003) | GENOTYPIC and phenotypic analyses of human immunodeficiency virus type 1 in antiretroviral drug-naive nigerian patients | AIDS Res. Hum. Retroviruses 22 (1), 22-26 (2006) | 5e-81 | 18 18PR 18RT |
18 18PR 18RT |
100 | HIVDB |
| Agwu (2008) | Analyses of HIV-1 Drug-Resistance Profiles Among Infected Adolescents Experiencing Delayed Antiretroviral Treatment Switch Following Initial Nonsuppressive Highly Active Antiretroviral Therapy | Unpublished | 1e-52 | |
120 120PR |
0 | Pending |
| Ait-Khaled (2002) | MUTATIONS in HIV-1 reverse transcriptase during therapy with abacavir, lamivudine and zidovudine in HIV-1-infected adults with no prior antiretroviral therapy | Antivir. Ther. (Lond.) 7 (1), 43-51 (2002) | 1e-98 | 156 156RT |
156 156RT |
100 | HIVDB |
| Albert (1992) | PERSISTENCE of azidothymidine-resistant human immunodeficiency virus type 1 RNA genotypes in posttreatment sera | J. Virol. 66 (9), 5627-5630 (1992) | 5e-55 | 20 20RT |
20 20RT |
100 | HIVDB |
| Albert (1994) | ANALYSIS of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes | J. Virol. 68 (9), 5918-5924 (1994) | 4e-77 | 23 23RT |
26 26RT |
88 | HIVDB |
| Alexander (2002) | INHIBITION of Human Immunodeficiency Virus Type 1 (HIV-1) Replication by a Two-Amino-Acid Insertion in HIV-1 Vif from a Nonprogressing Mother and Child | J. Virol. 76 (20), 10533-10539 (2002) | 0.027 | |
1 1IN |
0 | Gene fragment(s) |
| Alizon (1986) | GENETIC variability of the AIDS virus: nucleotide sequence analysis of two isolates from African patients | Cell 46 (1), 63-74 (1986) | 1e-165 | 2 1PR 1RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Allan (1993) | SPECIES-SPECIFIC diversity among simian immunodeficiency viruses from African green monkeys | J. Virol. 65 (6), 2816-2828 (1991) | 2e-33 | |
8 8IN |
0 | Laboratory/experimental isolate |
| Allen (2005) | SELECTIVE Escape from CD8+ T-Cell Responses Represents a Major Driving Force of Human Immunodeficiency Virus Type 1 (HIV-1) Sequence Diversity and Reveals Constraints on HIV-1 Evolution | J. Virol. 79 (21), 13239-13249 (2005) | 0 | 14 14PR 14RT 14IN |
14 14PR 14RT 14IN |
100 | HIVDB |
| Altfeld (2003) | HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus | Nature 420 (6914), 434-439 (2002) | 0 | |
2 2PR 2RT |
0 | Case report(s) / study subset |
| Anderson (2000) | TESTING the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E | J. Virol. 74 (22), 10752-10765 (2000) | 1e-164 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Anderson (1993) | ANALYSIS of envelope changes acquired by SIVmac239 during neuroadaption in rhesus macaques | Virology 195 (2), 616-626 (1993) | 5e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Andersson (1999) | MOLECULAR characterization of HIV-1 and HIV-2 in individuals from Guinea-Bissau with single or dual infections: predominance of a distinct HIV-1 subtype A/G recombinant in West Africa | Virology 261 (1999) In press | 2e-66 | 7 7RT |
7 7RT |
100 | HIVDB |
| Andreani (2008) | CLINICAL evolution and antiretroviral resistance patterns in HIV-1 dual infected patients in Argentina | Unpublished | 9e-51 | |
31 31PR |
0 | Pending |
| Andresen (2007) | CHARACTERIZATION of Near Full-Length Genomes of HIV Type 1 Strains in Denmark: Basis for a Universal Therapeutic Vaccine | AIDS Res. Hum. Retroviruses 23 (11), 1442-1448 (2007) | 0 | 17 17PR 17RT 17IN |
17 13PR 17RT 17IN |
100 | HIVDB |
| Anton (2004) | GENOTYPIC Resistance to Efavirenz/Protease Inhibitor Regimens | Unpublished | 0 | |
219 219PR 219RT |
0 | ARV Rx and/or other data are N/A |
| Apetrei (1998) | HUMAN immunodeficiency virus type 1 subtype F reverse transcriptase sequence and drug susceptibility | J. Virol. 72 (5), 3534-3538 (1998) | 1e-77 | 14 14RT |
14 14RT |
100 | HIVDB |
| Apetrei (2003) | HIV type 1 diversity in Northeastern Romania in 2000-2001 based on phylogenetic analysis of pol sequences from patients failing antiretroviral therapy | AIDS Res. Hum. Retroviruses 19 (12), 1155-1161 (2003) | 1e-117 | 163 77PR 86RT |
163 77PR 86RT |
100 | HIVDB |
| Apetrei (2004) | DIRECT Inoculation of Simian Immunodeficiency Virus from Sooty Mangabeys in Black Mangabeys (Lophocebus aterrimus): First Evidence of AIDS in a Heterologous African Species and Different Pathologic Outcomes of Experimental Infection | J. Virol. 78 (21), 11506-11518 (2004) | 4e-71 | |
18 18IN |
0 | Laboratory/experimental isolate |
| Apetrei (2005) | MOLECULAR Epidemiology of Simian Immunodeficiency Virus SIVsm in U.S. Primate Centers Unravels the Origin of SIVmac and SIVstm | J. Virol. 79 (14), 8991-9005 (2005) | 4e-90 | 47 47IN |
47 47IN |
100 | HIVDB |
| Apetrei (2006) | POTENTIAL for HIV transmission through unsafe injections | AIDS 20 (7), 1074-1076 (2006) | 1e-148 | |
21 17PR 13RT |
0 | Pending |
| Apetrei (2007) | SIVSMM Subtypes Induce Specific Immunologic and Virologic Changes in Naturally-Infected Sooty Mangabeys | Unpublished | 3e-70 | |
96 96IN |
0 | Pending |
| Arien (2005) | REPLICATIVE fitness of historical and recent HIV-1 isolates suggests HIV-1 attenuation over time | AIDS 19 (15), 1555-1564 (2005) | 0 | 23 23PR 23RT |
23 23RT |
100 | Case report(s) / study subset |
| Arnold (1995) | AT least five HIV-1 sequence subtypes (A, B, C, D, A/E) occur in England | AIDS Res. Hum. Retroviruses 11 (3), 427-429 (1995) | 1e-126 | 4 4PR |
4 4PR |
100 | HIVDB |
| Arroyo (2004) | HIV Type 1 Subtypes among Blood Donors in the Mbeya Region of Southwest Tanzania | AIDS Res. Hum. Retroviruses 20 (8), 895-901 (2004) | 0 | 20 20PR 20RT 20IN |
20 20PR 20RT 20IN |
100 | HIVDB |
| Arroyo (2006) | HIV-1 diversity and prevalence differ between urban and rural areas in the Mbeya region of Tanzania | AIDS 19 (14), 1517-1524 (2005) | 0 | 14 14PR 14RT 14IN |
14 8PR 14RT 14IN |
100 | HIVDB |
| Atkinson (2000) | CORRELATION between human immunodeficiency virus genotypic resistance and virologic response in patients receiving nelfinavir monotherapy or nelfinavir with lamivudine and zidovudine | J. Infect. Dis. 182 (2), 420-427 (2000) | 1e-123 | 49 49PR |
78 50PR 28RT |
62 | HIVDB |
| Aulicino (2004) | CIRCULATION of novel HIV type 1 A, B/C, and F subtypes in Argentina | AIDS Res. Hum. Retroviruses 21 (2), 158-164 (2005) | 0 | |
2 2PR 2RT |
0 | Case report(s) / study subset |
| Aulicino (2005) | SEQUENCE Analysis of a South American HIV Type 1 BC Recombinant | AIDS Res. Hum. Retroviruses 21 (10), 894-896 (2005) | 0 | 1 1IN |
1 1RT 1IN |
100 | HIVDB |
| Aulicino (2006) | CIRCULATION of novel HIV type 1 A, B/C, and F subtypes in Argentina | AIDS Res. Hum. Retroviruses 21 (2), 158-164 (2005) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Auswinporn (2001) | GENOTYPIC subtyping of the HIV-1 polymerase gene in 30 naave patients from Thailand | Southeast Asian J. Trop. Med. Public Health 32 (2), 346-350 | 1e-121 | 6 6PR 6RT |
27 27PR 27RT |
22 | HIVDB |
| Auwanit (2001) | FULL-LENGTH sequences of two CRF01_ae (subtype e) HIV type 1 isolates from 1995 samples of patients with sexually transmitted diseases in Thailand | AIDS Res. Hum. Retroviruses 17 (9), 867-871 (2001) | 1e-165 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| AYEHUMIE (1991) | Unpublished (1991) | 4e-41 | |
8 8PR |
0 | Gene fragment(s) | |
| Azevedo-Pereira (1998) | COMPLETE nucleotide sequence of HIV-2ALI, a low infectious isolate with restricted tropism to primary CD4+ cells | Unpublished | 2e-97 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Babic (2005) | PREVALENCE of antiretroviral drug resistance mutations and HIV-1 non-B subtypes in newly diagnosed drug-naive patients in Slovenia, 2000-2004 | Virus Res. 118 (1-2), 156-163 (2006) | 0 | 76 63PR 76RT |
76 63PR 76RT |
100 | HIVDB |
| Babic (2005) | MOLECULAR epidemiology of HIV-1 subtypes based on analysis of pol sequences in Slovenia, 1996-2005 | J. Med. Virol. 78 (8), 997-1002 (2006) | 0 | |
6 3PR 6RT |
0 | Case report(s) / study subset |
| Bacheler (2000) | HUMAN immunodeficiency virus type 1 mutations selected in patients failing efavirenz combination therapy | Antimicrob. Agents Chemother. 44 (9), 2475-2484 (2000) | 1e-130 | 3669 3646PR 3662RT |
3708 3708PR 3708RT |
98 | HIVDB |
| Bacheler (2001) | GENOTYPIC correlates of phenotypic resistance to efavirenz in virus isolates from patients failing nonnucleoside reverse transcriptase inhibitor therapy | J. Virol. 75 (11), 4999-5008 (2001) | 1e-126 | 87 84PR 87RT |
87 84PR 87RT |
100 | HIVDB |
| Badreddine (2007) | IDENTIFICATION and Characterization of HIV Type 1 Subtypes Present in the Kingdom of Saudi Arabia: High Level of Genetic Diversity Found | AIDS Res. Hum. Retroviruses 23 (5), 667-674 (2007) | 0 | 50 50IN |
60 6RT 60IN |
83 | HIVDB |
| Baier (1990) | COMPLETE nucleotide sequence of a simian immunodeficiency virus from African green monkeys: a novel type of intragroup divergence | Virology 176 (1), 216-221 (1990) | 1e-109 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Bailey (2007) | EVOLUTION of HIV-1 in an HLA-B*57-Positive Patient during Virologic Escape | J. Infect. Dis. 196 (1), 50-55 (2007) | 0 | |
38 35RT 6IN |
0 | Evolution/quasispecies study |
| Bailey (2008) | TRANSMISSION of Human Immunodeficiency Virus Type 1 from a Patient Who Developed AIDS to an Elite Suppressor | J. Virol. 82 (15), 7395-7410 (2008) | 0 | |
14 7PR 7RT 14IN |
0 | Case report(s) / study subset |
| Balakrishnan (2005) | HIV Type 1 Genotypic Variation in an Antiretroviral Treatment-Naive Population in Southern India | AIDS Res. Hum. Retroviruses 21 (4), 301-305 (2005) | 1e-139 | 49 49PR 49RT |
49 3PR 49RT |
100 | HIVDB |
| Baldrich-Rubio (2001) | A complex human immunodeficiency virus type 1 A/G/J recombinant virus isolated from a seronegative patient with AIDS from Benin, West Africa | J. Gen. Virol. 82 (PT 5), 1095-1106 (2001) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Balotta (2000) | PREVALENCE of transmitted nucleoside analogue-resistant HIV-1 strains and pre-existing mutations in pol reverse transcriptase and protease region: outcome after treatment in recently infected individuals | Antivir. Ther. (Lond.) 5 (1), 7-14 (2000) | 1e-128 | 71 33PR 38RT |
71 33PR 38RT |
100 | HIVDB |
| Balotta (2000) | PREVALENCE of multiple dideoxynucleoside analogue resistance (MddNR) in a multicentric cohort of HIV-1 Italian patients with virologic failure | Unpublished | 1e-133 | 149 132PR 149RT |
157 137PR 157RT |
94 | HIVDB |
| Balotta (2001) | INCREASING prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences | J. Acquir. Immune Defic. Syndr. 27 (5), 499-505 (2001) | 1e-100 | 19 19PR 19RT |
19 19PR 19RT |
100 | HIVDB |
| Bang (2007) | PREVALENCE of primary antiretroviral resistance: trends in Korea | AIDS Res. Hum. Retroviruses 24 (1), 83-85 (2008) | 0 | 81 81PR 81RT |
81 77PR 81RT |
100 | HIVDB |
| Bao (2008) | MOLECULAR tracing of sexual HIV Type 1 transmission in the southwest border of China | AIDS Res. Hum. Retroviruses 24 (5), 733-742 (2008) | 0 | |
2 1PR 2RT |
0 | Case report(s) / study subset |
| Barditch-Crovo (2001) | PHASE i/ii trial of the pharmacokinetics, safety, and antiretroviral activity of tenofovir disoproxil fumarate in human immunodeficiency virus-infected adults | Antimicrob. Agents Chemother. 45 (10), 2733-2739 (2001) | 4e-96 | 14 14RT |
14 14RT |
100 | HIVDB |
| Barlow (2001) | RECOMBINANT strains of HIV type 1 in the United Kingdom | AIDS Res. Hum. Retroviruses 17 (5), 467-474 (2001) | 1e-109 | |
12 12PR 9RT |
0 | ARV Rx and/or other data are N/A |
| Barlow (2003) | CHARACTERIZATION of a novel simian immunodeficiency virus (SIVmonNG1) genome sequence from a mona monkey (Cercopithecus mona) | J. Virol. 77 (12), 6879-6888 (2003) | 3e-92 | 2 1PR 1RT 2IN |
2 1RT 2IN |
100 | HIVDB |
| Barnett (1993) | DISTINGUISHING features of an infectious molecular clone of the highly divergent and noncytopathic human immunodeficiency virus type 2 UC1 strain | J. Virol. 67 (2), 1006-1014 (1993) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Barnett (1996) | DIRECT Submission | Submitted (11-OCT-1995) Barton Bryant, HIV Database, Los Ala | 2e-98 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Barreto (2006) | TRENDS in Antiretroviral Drug Resistance among HIV-1-Infected Blood Donors in Sao Paulo City, Brazil | Unpublished | 1e-142 | 6 6PR 6RT |
6 4PR 3RT |
100 | HIVDB |
| Barrie (1996) | NATURAL variation in HIV-1 protease, Gag p7 and p6, and protease cleavage sites within gag/pol polyproteins: amino acid substitutions in the absence of protease inhibitors in mothers and children infected by human immunodeficiency virus type 1 | Virology 219 (2), 407-416 (1996) | 1e-126 | |
37 37PR |
0 | Case report(s) / study subset |
| Bartolo (2007) | ANALYSIS of HIV-1 protease and retrotranscriptase in drug-naive patients from Mozambique | Unpublished | 0 | 111 35PR 76RT |
111 35PR 76RT |
100 | HIVDB |
| Bartolo (2007) | MOLECULAR epidemiology of HIV-1 in Angola | Unpublished | 1e-170 | |
140 19PR 121RT |
0 | Pending |
| Bartolo (2008) | MOLECULAR epidemiology of HIV-1 infection in Maputo, Mozambique, and susceptibility to antiretroviral therapy | Unpublished | 1e-165 | 1 1PR 1RT |
1 1RT |
100 | HIVDB |
| Baxter (2006) | GENOTYPIC changes in human immunodeficiency virus type 1 protease associated with reduced susceptibility and virologic response to the protease inhibitor tipranavir | J. Virol. 80 (21), 10794-10801 (2006) | 0 | 1530 1530PR 1394RT |
1533 393PR 1397RT |
99 | HIVDB |
| Beck (2007) | OPTIMIZATION of the Oligonucleotide Ligation Assay (OLA), a Rapid and Inexpensive Test for Detection of HIV-1 Drug-Resistance Mutations, for Non-B Subtypes | Unpublished | 8e-53 | |
9 9PR |
0 | Case report(s) / study subset |
| Becker (1995) | MOLECULAR and phylogenetic characterisation of a Guinea-Bissau-derived human immunodeficiency virus type 2 isolate | Unpublished | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Becker-Pergola (2000) | ANALYSIS of HIV type 1 protease and reverse transcriptase in antiretroviral drug-naive Ugandan adults | AIDS Res. Hum. Retroviruses 16 (8), 807-813 (2000) | 1e-115 | 54 27PR 27RT |
54 27PR 27RT |
100 | HIVDB |
| Beer (1999) | SIMIAN immunodeficiency virus (SIV) from sun-tailed monkeys (Cercopithecus solatus): evidence for host-dependent evolution of SIV within the C. lhoesti superspecies | J. Virol. 73 (9), 7734-7744 (1999) | 4e-97 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Beer (2000) | PATTERNS of genomic sequence diversity among their simian immunodeficiency viruses suggest that L'Hoest monkeys (Cercopithecus lhoesti) are a natural lentivirus reservoir | J. Virol. 74 (8), 3892-3898 (2000) | 3e-99 | 3 3IN |
3 2PR 3RT 3IN |
100 | HIVDB |
| Beer (2001) | CHARACTERIZATION of novel simian immunodeficiency viruses from red-capped mangabeys from Nigeria (SIVrcmNG409 and -NG411) | J. Virol. 75 (24), 12014-12027 (2001) | 1e-133 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Beerenwinkel (2002) | DIVERSITY and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype | Proc. Natl. Acad. Sci. U.S.A. 99 (12), 8271-8276 (2002) | 1e-126 | 468 448PR 446RT |
489 466PR 467RT |
95 | HIVDB |
| BENVENISTE (1988) | Unpublished (1990) | 6e-99 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB | |
| Bernardin (2003) | PRIMARY Infection of a Male Plasma Donor with Divergent HIV Variants from the Same Source Followed by Rapid Fluctuations in Their Relative Frequency and Viral Recombination | AIDS Res. Hum. Retroviruses 19 (11), 1009-1015 (2003) | 0 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Bernardin (2004) | HUMAN immunodeficiency virus mutations during the first month of infection are preferentially found in known cytotoxic T-lymphocyte epitopes | J. Virol. 79 (17), 11523-11528 (2005) | 0 | 18 18PR 18RT 18IN |
18 18PR 18RT 18IN |
100 | HIVDB |
| Bernardin (2006) | DIRECT Submission | Submitted (12-DEC-2005) Molecular Virology, Blood Systems Re | 0 | 13 13PR 13RT 13IN |
13 13PR 13RT 13IN |
100 | HIVDB |
| Bessong (2004) | CHARACTERIZATION of Human Immunodeficiency Virus Type 1 from a Previously Unexplored Region of South Africa with a High HIV Prevalence | AIDS Res. Hum. Retroviruses 21 (1), 103-109 (2005) | 1e-168 | 26 13PR 13RT |
26 13PR 13RT |
100 | HIVDB |
| Bessong (2005) | RESISTANCE mutational analysis of HIV type 1 subtype C among rural South African drug-naive patients prior to large-scale availability of antiretrovirals | AIDS Res. Hum. Retroviruses 22 (12), 1306-1312 (2006) | 1e-177 | 70 35PR 35RT |
70 35PR 35RT |
100 | HIVDB |
| Bibollet-Ruche (1996) | GENETIC diversity of simian immunodeficiency viruses from West African green monkeys: evidence of multiple genotypes within populations from the same geographical locale | J. Virol. 71 (1), 307-313 (1997) | 1e-30 | |
10 10IN |
0 | Gene fragment(s) |
| Bibollet-Ruche (2004) | NEW simian immunodeficiency virus infecting De Brazza's monkeys (Cercopithecus neglectus): evidence for a cercopithecus monkey virus clade | J. Virol. 78 (14), 7748-7762 (2004) | 0 | 4 4PR 4RT 4IN |
11 4PR 6RT 11IN |
36 | HIVDB |
| Bibollet-Ruche (2005) | COMPLETE genome analysis of one of the earliest SIVcpzPtt strains from Gabon (SIVcpzGAB2) | AIDS Res. Hum. Retroviruses 20 (12), 1377-1381 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Bibollet-Ruche (2005) | GENETIC characterization of accessory genes from human immunodeficiency viruses type 1 group O | Unpublished | 3e-08 | |
14 14IN |
0 | Gene fragment(s) |
| Biesinger (2007) | CHANGES in simian immunodeficiency virus reverse transcriptase alleles that appear during infection of macaques enhance infectivity and replication in CD4(+) T cells | Virology 370 (1), 184-193 (2008) | 0 | |
8 8RT |
0 | Case report(s) / study subset |
| Binverted question markelec (2000) | HIGH levels of drug-resistant human immunodeficiency virus variants in patients exhibiting increasing CD4+ T cell counts despite virologic failure of protease inhibitor-containing antiretroviral combination therapy | J. Infect. Dis. 181 (5), 1808-1812 (2000) | 1e-128 | 100 100PR |
100 100PR |
100 | HIVDB |
| Blankson (2007) | ISOLATION and Characterization of Replication-Competent HIV-1 from a Subset of Elite Suppressors | J. Virol. 81 (5), 2508-2518 (2007) | 0 | 6 6PR 6RT 6IN |
6 4PR 6RT 6IN |
100 | HIVDB |
| Bleiber (2001) | INDIVIDUAL contributions of mutant protease and reverse transcriptase to viral infectivity, replication, and protein maturation of antiretroviral drug-resistant human immunodeficiency virus type 1 | J. Virol. 75 (7), 3291-3300 (2001) | 1e-112 | 21 15PR 14RT |
21 15PR 15RT |
100 | HIVDB |
| Blick (2006) | THE Probable Source of Both the Primary Multidrug-Resistant (MDR) HIV-1 Strain Found in a Patient with Rapid Progression to AIDS and a Second Recombinant MDR Strain Found in a Chronically HIV-1-Infected Patient | J. Infect. Dis. 195 (9), 1250-1259 (2007) | 1e-163 | |
13 1PR 13RT |
0 | Case report(s) / study subset |
| Bobkov (2004) | DIVERSITY of HIV-1 Subtype A and CRF03_AB Protease in Eastern Europe: Selection of the V77I Variant Followed by Its Rapid Spread in IDU Populations | Unpublished | 5e-40 | 27 27PR |
30 30PR |
90 | HIVDB |
| Bodelle (2004) | IDENTIFICATION and Genomic Sequence of an HIV Type 1 Group N Isolate from Cameroon | AIDS Res. Hum. Retroviruses 20 (8), 902-908 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Boeri (2003) | EVOLUTIONARY characteristics of HIV-1 variants resistant to protease inhibitors in the absence of drug-selective pressure | AIDS Res. Hum. Retroviruses (2003) In press | 0 | |
18 18PR 18RT |
0 | Case report(s) / study subset |
| Bogh (2001) | INVESTIGATING association between baseline HIV-1 genotypic resistance and virological response among protease in-hibitor-naive patients treated with HAART | Unpublished | 1e-133 | |
180 112PR 68RT |
0 | Unpublished |
| Bonhoeffer (2008) | Evidence for positive epistasis in HIV-1 | Science 306 (5701), 1547-1550 (2004) | 1e-175 | 7809 7809PR 7809RT |
7809 5378PR 7113RT |
100 | HIVDB |
| Bouchard (2004) | HIV Type 1 Drug Resistance among Naive Patients from Venezuela | AIDS Res. Hum. Retroviruses 23 (3), 482-485 (2007) | 1e-140 | 37 17PR 20RT |
37 17PR 20RT |
100 | HIVDB |
| Bourara (2007) | TARGET cell APOBEC3C can induce limited G-to-A mutation in HIV-1 | PLoS Pathog. 3 (10), 1477-1485 (2007) | 4e-52 | |
2 2PR |
0 | Case report(s) / study subset |
| Bouzeghoub (2005) | HIGH Diversity of HIV Type 1 in Algeria | AIDS Res. Hum. Retroviruses 22 (4), 367-372 (2006) | 1e-149 | 248 133PR 116RT |
248 132PR 116RT |
100 | HIVDB |
| Bouzeghoub (2008) | FIRST Observation of HIV Type 1 Drug Resistance Mutations in Algeria | AIDS Res. Hum. Retroviruses 24 (11), 1467-1473 (2008) | 6e-52 | |
10 10PR |
0 | Pending |
| Brachtel (2002) | DEMONSTRATION of de Novo HIV Type 1 Production by Detection of Multiply Spliced and Unspliced HIV Type 1 RNA in Paraffin-Embedded Tonsils | AIDS Res. Hum. Retroviruses 18 (11), 785-790 (2002) | 1e-62 | |
43 43PR |
0 | Evolution/quasispecies study |
| Bradshaw (2007) | NOVEL Drug Resistance Pattern Associated with the Mutations K70G and M184V in Human Immunodeficiency Virus Type 1 Reverse Transcriptase | Antimicrob. Agents Chemother. 51 (12), 4489-4491 (2007) | 0 | 9 4PR 9RT |
9 9RT |
100 | HIVDB |
| Brandin (2003) | POL Gene Sequence Variation in Swedish HIV-2 Patients Failing Antiretroviral Therapy | AIDS Res. Hum. Retroviruses 19 (7), 543-550 (2003) | 3e-97 | 30 30PR 30RT |
30 30PR 30RT |
100 | HIVDB |
| Brann (2006) | FUNCTIONAL Correlation between a Novel Amino Acid Insertion at Codon 19 in the Protease of Human Immunodeficiency Virus Type 1 and Polymorphism in the p1/p6 Gag Cleavage Site in Drug Resistance and Replication Fitness | J. Virol. 80 (12), 6136-6145 (2006) | 2e-49 | 1 1PR |
1 1PR |
100 | Case report(s) / study subset |
| Brennan (1997) | GENETIC variation in human immunodeficiency virus type 2: identification of a unique variant from human plasma | AIDS Res. Hum. Retroviruses 13 (5), 401-404 (1997) | 0.27 | 1 1PR 1RT 1IN |
1 1RT |
100 | HIVDB |
| Brennan (2007) | HIV-1 Strains Identified in Brazilian Blood Donors: Significant Prevalence of B/F1 Recombinants | AIDS Res. Hum. Retroviruses 23 (11), 1434-1441 (2007) | 1e-167 | 82 82IN |
85 85IN |
96 | HIVDB |
| Brennan (2009) | The prevalence of diverse HIV-1 strains was stable in Cameroonian blood donors from 1996 to 2004 | J. Acquir. Immune Defic. Syndr. 49 (4), 432-439 (2 | 1e-166 | 572 572IN |
573 573IN |
99 | HIVDB |
| Brennan (2009) | Identification of HIV-1 Non-B Subtypes and Antiretroviral Drug Resistant Strains in United States Blood Donors | Unpublished | 0 | 65 62PR 62RT 3IN |
65 43PR 62RT 3IN |
100 | HIVDB |
| Brenner (2006) | HIV-1 subtype C viruses rapidly develop K65R resistance to tenofovir in cell culture | AIDS 20 (9), F9-F13 (2006) | 0 | 5 5PR 5RT |
5 3PR 5RT |
100 | HIVDB |
| Brenner (2006) | HIGH Rates of Forward Transmission Events after Acute/Early HIV-1 Infection | J. Infect. Dis. 195 (7), 951-959 (2007) | 0 | |
24 22PR 12RT |
0 | Case report(s) / study subset |
| Brigido (2005) | SHORT Communication: Molecular Characteristics of HIV Type 1 Circulating in Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 21 (7), 673-682 (2005) | 0 | |
171 65PR 106RT |
0 | Pending |
| Brigido (2008) | HIV type 1 subtype C and CB Pol recombinants prevail at the cities with the highest AIDS prevalence rate in Brazil | AIDS Res. Hum. Retroviruses 23 (12), 1579-1586 (2007) | 0 | 136 90PR 98RT |
136 52PR 97RT |
100 | HIVDB |
| Brindeiro (1999) | SEQUENCE diversity of the reverse transcriptase of human immunodeficiency virus type-1 from Brazilian untreated individuals | Antimicrob. Agents Chemother. (1999) In press | 2e-91 | 18 18RT |
18 18RT |
100 | HIVDB |
| Brindeiro (2003) | BRAZILIAN Network for HIV Drug Resistance Surveillance (HIV-BResNet): a survey of chronically infected individuals | AIDS 17 (7), 1063-1069 (2003) | 1e-145 | 350 199PR 191RT |
357 199PR 199RT |
98 | HIVDB |
| Briones (2000) | DYNAMICS of dominance of a dipeptide insertion in reverse transcriptase of HIV-1 from patients subjected to prolonged therapy | Virus Res. 66 (1), 13-26 (2000) | 1e-128 | 161 99PR 161RT |
186 180PR 186RT |
86 | HIVDB |
| Briones (2003) | MEMORY in retroviral quasispecies: experimental evidence and theoretical model for human immunodeficiency virus | J. Mol. Biol. 331 (1), 213-229 (2003) | 1e-126 | |
15 15PR 15RT |
0 | Evolution/quasispecies study |
| Brown (2009) | Phylogenetic reconstruction of transmission events from individuals with acute HIV infection: toward more-rigorous epidemiological definitions | J. Infect. Dis. 199 (3), 427-431 (2009) | 1e-172 | |
135 118PR 63RT |
0 | Evolution/quasispecies study |
| Brown (1999) | SEQUENCE clusters in human immunodeficiency virus type 1 reverse transcriptase are associated with subsequent virological response to antiretroviral therapy | J. Infect. Dis. 180 (4), 1043-1049 (1999) | 1e-130 | |
55 55PR 55RT |
0 | DNAChip |
| Brown (2005) | BIOLOGIC and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines | J. Virol. 79 (10), 6089-6101 (2005) | 0 | 21 21PR 21RT 21IN |
21 21PR 21RT 21IN |
100 | HIVDB |
| Brumme (2007) | EVIDENCE of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1 | PLoS Pathog. 3 (7), E94 (2007) | 0 | 811 811PR 594RT |
811 773PR 594RT |
100 | HIVDB |
| Bruselles (2009) | Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV BF recombinant associated with a fatal primary infection | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Unpublished |
| Buckton (2008) | DEVELOPMENT and optimization of an internally controlled dried blood spot assay for surveillance of human immunodeficiency virus type-1 drug resistance | J. Antimicrob. Chemother. 62 (6), 1191-1198 (2008) | 0 | |
17 17RT |
0 | Case report(s) / study subset |
| Bulgheroni (2001) | UNUSUAL codon 69 insertions: influence on human immunodeficiency virus type 1 reverse transcriptase drug susceptibility | J. Clin. Virol. 29 (1), 27-32 (2004) | 4e-77 | |
3 3RT |
0 | Pending |
| Buonaguro (2006) | SCREENING of HIV-1 isolates by reverse heteroduplex mobility assay and identification of non-B subtypes in Italy | J. Acquir. Immune Defic. Syndr. 37 (2), 1295-1306 (2004) | 0 | |
3 3RT 3IN |
0 | Case report(s) / study subset |
| Burda (2005) | HIV-1 CRF09_cpx circulates in the North West Province of Cameroon where CRF02_AG infections predominate and recombinant strains are common | AIDS Res. Hum. Retroviruses 20 (12), 1358-1363 (2004) | 2e-50 | |
17 17PR |
0 | Sequence quality |
| Burkala (2005) | COMPARTMENTALIZATION of HIV-1 in the central nervous system: role of the choroid plexus | AIDS 19 (7), 675-684 (2005) | 1e-152 | |
140 123PR 140RT |
0 | Evolution/quasispecies study |
| Burns (2005) | SEQUENCE variability of the integrase protein from a diverse collection of HIV type 1 isolates representing several subtypes | AIDS Res. Hum. Retroviruses 18 (14), 1031-1041 (2002) | 1e-159 | 21 21IN |
21 21IN |
100 | HIVDB |
| Bussmann (2005) | HIV-1 subtype C drug-resistance background among ARV-naive adults in Botswana | Unpublished | 0 | 71 71PR 71RT |
71 64PR 71RT |
100 | HIVDB |
| Bychenko (2009) | Isolation and characterization of new HIV-1 subtype A1 strain from Russia, envelope proteins variability analysis | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Byrn (2006) | HIV-1 in semen: an isolated virus reservoir | Lancet 350 (9085), 1141 (1997) | 4e-52 | |
35 35PR |
0 | Evolution/quasispecies study |
| Cabana (1999) | EMERGENCE and genetic evolution of HIV-1 variants with mutations conferring resistance to multiple reverse transcriptase and protease inhibitors | J. Med. Virol. 59 (4), 480-490 (1999) | 1e-125 | 92 54PR 38RT |
92 54PR 38RT |
100 | HIVDB |
| Cabrera (2008) | RALTEGRAVIR Susceptibility and Fitness Progression of HIV-1 Integrase in Patients on Long-Term Antiretroviral Therapy | Unpublished | 1e-167 | 135 135IN |
135 135IN |
100 | HIVDB |
| Calazans (2003) | LOW Accumulation of L90M in Protease from Subtype F HIV-1 with Resistance to Protease Inhibitors Is Caused by the L89M Polymorphism | J. Infect. Dis. 191 (11), 1961-1970 (2005) | 1e-126 | 50 50PR 50RT |
52 52PR 51RT |
96 | HIVDB |
| Cali (2004) | EVIDENCE for host-driven selection of the HIV type 1 vpr gene in vivo during HIV disease progression in a transfusion-acquired cohort | AIDS Res. Hum. Retroviruses 21 (8), 728-733 (2005) | 0 | 15 15IN |
15 15PR 15RT 15IN |
100 | HIVDB |
| Calugi (2006) | ENTIRE Genome of a Strain of Human Immunodeficiency Virus Type 1 with a Deletion of nef That Was Recovered 20 Years after Primary Infection: Large Pool of Proviruses with Deletions of env | J. Virol. 80 (23), 11892-11896 (2006) | 0 | |
1 1RT 1IN |
0 | Sequence quality |
| Calvez (2002) | IMPACT of stavudine phenotype and thymidine analogues mutations on viral response to stavudine plus lamivudine in ALTIS 2 ANRS trial | Antivir. Ther. (Lond.) 7 (3), 211-218 (2002) | 2e-94 | |
26 26RT |
0 | ARV Rx and/or other data are N/A |
| Candotti (1999) | AIDS in an HIV-seronegative Ghanaian woman with intersubtype A/G recombinant HIV-1 infection | J. Med. Virol. 62 (1), 1-8 (2000) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Canducci (2008) | DYNAMIC patterns of Human immunodeficiency virus type 1 (HIV-1) integrase gene evolution in patients failing Raltegravir based salvage therapies | Unpublished | 1e-154 | 37 37IN |
37 37IN |
100 | HIVDB |
| Cao (2007) | HIV subtype distribution in a cohort of HIV infected Ugandans: clinical implications | Unpublished | 0 | |
46 26PR 46RT |
0 | Pending |
| Cardoso (2009) | HIV-1 pol Phylogenetic Diversity and Antiretroviral Resistance Mutations in Treatment Naive Patients From Central West Brazil | Unpublished | 1e-52 | 29 29PR 29RT |
29 29PR |
100 | HIVDB |
| Caride (2000) | DRUG-RESISTANT reverse transcriptase genotyping and phenotyping of B and non-B subtypes (F and A) of human immunodeficiency virus type I found in Brazilian patients failing HAART | Virology 275 (1), 107-115 (2000) | 5e-89 | 14 14RT |
14 14RT |
100 | HIVDB |
| Caride (2001) | GENOTYPIC and phenotypic evidence of different drug-resistance mutation patterns between B and non-B subtype isolates of human immunodeficiency virus type 1 found in Brazilian patients failing HAART | Virus Genes 23 (2), 193-202 (2001) | 1e-123 | 14 14PR |
28 28PR |
50 | HIVDB |
| Carneiro-Proietti (1997) | DIRECT Submission | Submitted (14-NOV-1996) Lab. Virus, Dept. Microbiologia, Uni | 1e-128 | |
1 1PR |
0 | Case report(s) / study subset |
| Caron (2008) | HUMAN immunodeficiency virus type 1 seroprevalence and antiretroviral drug resistance-associated mutations in miners in Gabon, central Africa | AIDS Res. Hum. Retroviruses 24 (9), 1225-1228 (2008) | 2e-50 | 2 2PR |
2 2PR |
100 | HIVDB |
| Carr (1996) | FULL-LENGTH sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand | J. Virol. 70 (9), 5935-5943 (1996) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Carr (1998) | FULL genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants | Virology 247 (1), 22-31 (1998) | 1e-164 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Carr (1999) | CHARACTERIZATION of subtype A HIV-1 from Africa by full genome sequencing | AIDS 13 (14), 1819-1826 (1999) | 1e-166 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Carr (1999) | DIRECT Submission | Submitted (07-JUL-1998) Molecular Epidemiology, Henry M. Jac | 1e-164 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Carr (2001) | THE AG Recombinant IbNG and Novel Strains of Group M HIV-1 are Common in Cameroon | Virology (2001) In press | 1e-166 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Carr (2001) | DIVERSE BF recombinants have spread widely since the introduction of HIV-1 into South America | AIDS 15 (15), F41-F47 (2001) | 1e-165 | 21 21PR 21RT 21IN |
21 21PR 21RT 21IN |
100 | HIVDB |
| Carr (2004) | OUTBREAK of a West African recombinant of HIV-1 in Tashkent, Uzbekistan | J. Acquir. Immune Defic. Syndr. 39 (5), 570-575 (2005) | 0 | 245 233PR 232RT 12IN |
246 242PR 241RT 12IN |
99 | HIVDB |
| Carr (2005) | HIV Subtype and Drug Resistance Patterns among Drug Naive Persons in Jos, Nigeria | Unpublished | 0 | 23 23PR 23RT 7IN |
23 9PR 23RT 7IN |
100 | HIVDB |
| Carr (2006) | FIRST report of an HIV-1 triple recombinant of subtypes B, C and F in Buenos Aires, Argentina | Unpublished | 0 | 10 10PR 10RT 10IN |
10 9PR 10RT 10IN |
100 | HIVDB |
| Carr (2006) | HIGH Genetic Complexity of HIV-1 in low-prevalence, rural regions of Cameroon | Unpublished | 0 | 2 2PR 2RT 2IN |
2 1PR 2RT 2IN |
100 | HIVDB |
| Carr (2008) | HIV-1 in the Caribbean is Dominated by Subtype B | Unpublished | 1e-139 | |
62 59PR 27RT |
0 | Unpublished |
| Carr (2008) | IDENTIFICATION of CRF17_BF in Four South American Countries | Unpublished | 0 | |
6 1PR 6RT 6IN |
0 | Pending |
| Carr (2008) | HIV-1 Epidemic in the Caribbean is Dominated by Subtype B | Unpublished | 0 | |
15 10PR 15RT 15IN |
0 | Pending |
| Carrion (2002) | CIRCULATING Recombinant Form CRF02_AG in South America | AIDS Res. Hum. Retroviruses 19 (4), 329-332 (2003) | 1e-163 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Carrion (2004) | DOCUMENTATION of subtype C HIV Type 1 strains in Argentina, Paraguay, and Uruguay | AIDS Res. Hum. Retroviruses 20 (9), 1022-1025 (2004) | 0 | 2 2PR 2RT 2IN |
7 7PR 7RT 2IN |
28 | HIVDB |
| Carrion (2009) | Molecular characterization of the human immunodeficiency virus type 1 among children in Lima, Peru | AIDS Res. Hum. Retroviruses (2009) In press | 1e-173 | |
2 2RT |
0 | Pending |
| Casado (2003) | NEAR Full-Length Genome Characterization of an HIV Type 1 CRF05_DF Virus from Spain | AIDS Res. Hum. Retroviruses 19 (8), 719-725 (2003) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Casado (2005) | DIRECT Submission | Submitted (18-JAN-2005) Patogenia Viral, Instituto de Salud | 1e-126 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Casado (2007) | IDENTIFICATION of a novel HIV-1 circulating ADG intersubtype recombinant form (CRF19_cpx) in Cuba | J. Acquir. Immune Defic. Syndr. 40 (5), 532-537 (2005) | 0 | 2 2PR 2RT 2IN |
2 1PR 2RT 2IN |
100 | HIVDB |
| Castro (2002) | MOLECULAR epidemiology of HIV-1 in Venezuela: high prevalence of HIV-1 subtype B and identification of a B/F recombinant infection | J. Acquir. Immune Defic. Syndr. 32 (3), 338-344 (2003) | 7e-77 | 2 1PR 1RT |
2 1PR 1RT |
100 | HIVDB |
| Castro (2004) | BODY Compartments Follow-up & HIV-1 Mosaic Genome Definition. E7109254 | (in) EXTENDED ABSTRACT BOOK, XV INTERNATIONAL AIDS CONFERENC | 1e-135 | |
4 4RT |
0 | Case report(s) / study subset |
| Castro (2004) | RESISTANCE mutations and molecular characterization of HIV-1 isolates from Venezuelan patients with virological failure | Unpublished | 1e-136 | |
41 20PR 21RT |
0 | Pending |
| Caumont (2001) | SEQUENCE analysis of Env C2/V3, Gag p17/p24, and Prot regions of 25 HIV-1 isolates from Ho Chi Minh City, Viet Nam | Unpublished | 9e-98 | 26 24PR 2RT |
27 25PR 2RT |
96 | HIVDB |
| Ceballos (2009) | HIV dual infection with subtype B and BF recombinants in Argentina | Unpublished | 1e-51 | |
33 33PR |
0 | Pending |
| Ceccherini-Silberstein (2005) | IDENTIFICATION of the minimal conserved structure of HIV-1 protease in the presence and absence of drug pressure | AIDS 18 (12), F11-F19 (2004) | 0 | |
477 242PR 477RT |
0 | Pending |
| Ceccherini-Silberstein (2006) | HIGH sequence conservation of human immunodeficiency virus type 1 reverse transcriptase under drug pressure despite the continuous appearance of mutations | J. Virol. 79 (16), 10718-10729 (2005) | 0 | |
178 123PR 178RT |
0 | Pending |
| Ceccherini-Silberstein (2007) | IMPACT of HIV-1 Reverse Transcriptase Polymorphism F214L on Virological Response to Thymidine Analogue-Based Regimens in Antiretroviral Therapy (ART)-Naive and ART-Experienced Patients | J. Infect. Dis. 196 (8), 1180-1190 (2007) | 0 | |
237 217PR 88RT |
0 | Pending |
| Ceccherini-Silberstein (2007) | CHARACTERIZATION and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of resistance to nonnucleoside inhibitors | J. Virol. 81 (20), 11507-11519 (2007) | 0 | |
75 44PR 75RT |
0 | ARV Rx and/or other data are N/A |
| Ceccherini-Silberstein (2007) | IMPACT of HIV-1 Reverse Transcriptase Polymorphism F214L on Virological Response to Thymidine Analogue-Based Regimens in Antiretroviral Therapy (ART)-Naive and ART-Experienced Patients | J. Infect. Dis. 196 (8), 1180-1190 (2007) | 4e-49 | |
7 7PR |
0 | Pending |
| Cenci (1997) | SELECTED nucleotide sequence of the pol gene of the monocytotropic strain HIV type 1 BaL | AIDS Res. Hum. Retroviruses 13 (7), 629-632 (1997) | 5e-49 | 1 1RT |
1 1RT |
100 | HIVDB |
| Cenci (2003) | LOW Intra-Host Diversity in HIV-1 Protease Gene in Untreated Primary Infection: a Crucial Role for Purifying Selection | Unpublished | 1e-126 | |
67 67PR |
0 | Unpublished |
| Cenci (2004) | HIV-1 pol genotype divergence in the plasma and cerebrospinal fluid (CSF) of untreated patients in acute and chronic infection | Unpublished | 1e-108 | |
58 44PR 14RT |
0 | Unpublished |
| Chaix (2003) | STABLE prevalence of genotypic drug resistance mutations but increase in non-B virus among patients with HIV-1 primary infection in France | Unpublished | 1e-116 | 244 244RT |
244 244RT |
100 | HIVDB |
| Chakrabarti (1999) | SEQUENCE of simian immunodeficiency virus from macaque and its relationship to other human and simian retroviruses | Nature 328 (6130), 543-547 (1987) | 1e-98 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Chakraborty (2003) | FAILURE to detect human immunodeficiency virus type 1 superinfection in 28 HIV-seroconcordant individuals with high risk of reexposure to the virus | AIDS Res. Hum. Retroviruses 20 (9), 1026-1031 (2004) | 0 | |
162 81PR 81RT |
0 | Evolution/quasispecies study |
| Chakraborty (2003) | CAN HIV-1 superinfection compromise antiretroviral therapy? | AIDS 18 (1), 132-134 (2004) | 2e-87 | |
8 8RT |
0 | Case report(s) / study subset |
| Chaloin (2004) | ANTIVIRAL activity of reverse trancriptase inhibitors with different HIV strains and isolates | Unpublished | 0 | |
14 14RT 8IN |
0 | ARV Rx and/or other data are N/A |
| Chamberland (2007) | CHARACTERIZATION of drug resistance in a cohort of subjects on antiretroviral therapy infected with HIV-1 CRF02_AG and AGK subtypes in Mali and Burkina Faso | Unpublished | 0 | 88 88PR 88RT |
88 11PR 88RT |
100 | HIVDB |
| Chang (2006) | MOLECULAR Epidemiology of HIV Type 1 Subtypes in Taiwan: Outbreak of HIV Type 1 CRF07)BC Infection in Intravenous Drug Users | AIDS Res. Hum. Retroviruses 22 (11), 1055-1066 (2006) | 1e-145 | 152 152PR 152RT |
152 128PR 146RT |
100 | HIVDB |
| Chang (2000) | DIFFERENTIAL stability of the mRNA secondary structures in the frameshift site of various HIV type 1 viruses | AIDS Res. Hum. Retroviruses 15 (17), 1591-1596 (1999) | 1e-163 | 5 5PR 5RT 5IN |
5 5PR 5RT 5IN |
100 | HIVDB |
| Chang (2000) | SEQUENCE features downstream of the primer-binding site of HIV type 1 subtype E shared by subtype G and a subset of subtype A | AIDS Res. Hum. Retroviruses 15 (18), 1703-1706 (1999) | 1e-163 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Chantratita (1999) | HIV-1 resistant to antiretroviral drugs in Thailand | Unpublished | 1e-128 | |
722 342PR 469RT |
0 | ARV Rx and/or other data are N/A |
| Charpentier (2009) | Prevalence of HIV-1 drug resistance in HIV-1 infected patients treated in Douala, Cameroon | Unpublished | 0 | |
56 1PR 56RT |
0 | Pending |
| Chen (1996) | GENETIC characterization of new West African simian immunodeficiency virus SIVsm: geographic clustering of household-derived SIV strains with human immunodeficiency virus type 2 subtypes and genetically diverse viruses from a single feral sooty mangabey troop | J. Virol. 70 (6), 3617-3627 (1996) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Cheng (1992) | MOLECULAR characterization of HIV-2 (ROD) protease following PCR cloning from virus infected H9 cells | Adv. Exp. Med. Biol. 312, 83-88 (1992) | 2e-24 | 1 1PR |
1 1PR |
100 | HIVDB |
| Chin (2006) | INVERSE Relationship between Viral Load and Genotypic Resistance Mutations in Korean Patients with Primary HIV Type 1 Infections | AIDS Res. Hum. Retroviruses 22 (11), 1142-1147 (2006) | 1e-147 | 52 52PR 52RT |
52 49PR 52RT |
100 | HIVDB |
| Chin (2007) | EARLY identification of seronegative human immunodeficiency virus type 1 infection with severe presentation | J. Clin. Microbiol. 45 (5), 1659-1662 (2007) | 1e-143 | |
3 3PR 3RT |
0 | Case report(s) / study subset |
| Chin (2007) | FACTORS Associated with Short-term Clinical Parameters after Genotypic Resistance Assay in Korean Patients with HIV-1 Subtype B Virologic Failure | Unpublished | 1e-146 | |
40 23PR 40RT |
0 | Unpublished |
| Cho (2005) | DIRECT Submission | Submitted (26-APR-2005) Microbiology, University of Ulsan Co | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Cho (2005) | FULL-LENGTH sequences of long-term slow progressor | Unpublished | 0 | 6 6PR 6RT 6IN |
6 5PR 6RT 6IN |
100 | HIVDB |
| Cho (2006) | VARIATION of vif gene according to progression rate in Korean patients: association with KRG treatment | Unpublished | 0.02 | |
105 105IN |
0 | Gene fragment(s) |
| Cho (2006) | HIV-1 Vif gene | Unpublished | 0.02 | |
75 75IN |
0 | Gene fragment(s) |
| Cho (2008) | HIGH Frequency of Gross Deletions in the 5' LTR and gag Regions in HIV Type 1-Infected Long-Term Survivors Treated with Korean Red Ginseng | AIDS Res. Hum. Retroviruses 24 (2), 181-193 (2008) | 1e-52 | |
18 17PR 1IN |
0 | Case report(s) / study subset |
| Cho (2001) | LONG-TERM intake of Korean red ginseng in HIV-1-infected patients: development of resistance mutation to zidovudine is delayed | Int. Immunopharmacol. 1 (7), 1295-1305 (2001) | 4e-96 | 16 16RT |
37 37RT |
43 | HIVDB |
| Cho (2002) | FREQUENCY of mutations conferring resistance to nucleoside reverse transcriptase inhibitors in human immunodeficiency virus type 1-infected patients in Korea | J. Clin. Microbiol. 40 (4), 1319-1325 (2002) | 1e-118 | 22 22RT |
23 6PR 22RT |
95 | HIVDB |
| Cho (2003) | MOLECULAR epidemiologic study of a human immunodeficiency virus 1 outbreak in haemophiliacs B infected through clotting factor 9 after 1990 | Vox Sang. 92 (2), 113-120 (2007) | 0 | 1 1PR |
186 149PR 161RT |
0 | Evolution/quasispecies study |
| Cho (2005) | FULL sequence of HIV type 1 Korean subtype B in an AIDS case with atypical seroconversion: TAAAA at TATA box | AIDS Res. Hum. Retroviruses 21 (11), 961-964 (2005) | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Cho (2006) | HIGH frequency of grossly deleted nef genes in HIV-1 infected long-term slow progressors treated with Korean red ginseng | Curr. HIV Res. 4 (4), 447-457 (2006) | 0.02 | |
3 3IN |
0 | Gene fragment(s) |
| Choi (1997) | HIV type 1 isolate Z321, the strain used to make a therapeutic HIV type 1 immunogen, is intersubtype recombinant | AIDS Res. Hum. Retroviruses 13 (4), 357-361 (1997) | 1e-164 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Church (2007) | HIV type 1 variants with nevirapine resistance mutations are rarely detected in antiretroviral drug-naive African women with subtypes A, C, and D | AIDS Res. Hum. Retroviruses 23 (6), 764-768 (2007) | 0 | 47 47PR 47RT |
47 7PR 47RT |
100 | HIVDB |
| Church (2009) | Analysis of NVP resistance in Ugandan infants who were HIV-infected despite receiving single dose (SD) nevirapine (NVP) vs. SD NVP plus up to 6-weeks of daily NVP to prevent HIV vertical transmission | Unpublished | 0 | 49 49PR 49RT |
49 15PR 49RT |
100 | HIVDB |
| Ciccozzi (2005) | MOLECULAR Diversity of HIV in Albania | J. Infect. Dis. 192 (3), 475-479 (2005) | 0 | 66 66PR 66RT |
66 63PR 66RT |
100 | HIVDB |
| Ciccozzi (2007) | THE HIV type 1 epidemic in Bulgaria involves multiple subtypes and is sustained by continuous viral inflow from West and East European countries | AIDS Res. Hum. Retroviruses 24 (6), 771-779 (2008) | 1e-143 | 33 33PR 33RT |
33 33RT |
100 | HIVDB |
| Cilla (2001) | MOLECULAR evidence of homosexual transmission of HIV type 2 in Spain | AIDS Res. Hum. Retroviruses 17 (5), 417-422 (2001) | 7e-05 | |
4 4RT |
0 | Case report(s) / study subset |
| Cinque (2001) | EFFECT of genotypic resistance on the virological response to highly active antiretroviral therapy in cerebrospinal fluid | AIDS Res. Hum. Retroviruses 17 (5), 377-383 (2001) | 1e-129 | 33 15PR 18RT |
57 24PR 33RT |
57 | HIVDB |
| Clarke (2005) | REVERSE transcriptase and protease sequences from HIV-1 non-subtype B infected persons in the United Kingdom | Unpublished | 0 | 274 118PR 156RT |
497 334PR 379RT |
55 | HIVDB |
| Clavel (1996) | MOLECULAR cloning and polymorphism of the human immune deficiency virus type 2 | Nature 324 (6098), 691-695 (1986) | 1e-98 | 2 1PR 1RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Cleland (1996) | EVOLUTION of zidovudine resistance-associated genotypes in human immunodeficiency virus type 1-infected patients | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 12 (1), 6-1 | 1e-123 | 356 356RT |
370 370RT |
96 | Evolution/quasispecies study |
| Clevenbergh (2002) | LONG-TERM virologic outcome in patients infected with multi-nucleoside analogue resistant HIV-1 | Antivir. Ther. (Lond.) (2002) In press | 1e-121 | 24 12PR 12RT |
24 12PR 12RT |
100 | HIVDB |
| Clewley (1998) | A novel simian immunodeficiency virus (SIVdrl) pol sequence from the drill monkey, Mandrillus leucophaeus | J. Virol. 72 (12), 10305-10309 (1998) | 1.1 | 1 1PR 1RT |
1 1RT |
100 | HIVDB |
| Clewley (2001) | DIRECT Submission | Unpublished | 0 | 1 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Cloyd (1990) | SPECTRUM of biological properties of human immunodeficiency virus (HIV-1) isolates | Virology 174 (1), 103-116 (1990) | 1e-164 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Collman (2000) | V3-INDEPENDENT determinants of macrophage tropism in a primary human immunodeficiency virus type 1 isolate | Unpublished | 1e-163 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Colonno (2004) | IDENTIFICATION of I50L as the Signature Atazanavir (ATV)Resistance Mutation in Treatment-Naive HIV-1Infected Patients Receiving ATV-Containing Regimens | J. Infect. Dis. 189 (10), 1802-1810 (2004) | 3e-51 | 11 11PR |
11 11PR |
100 | HIVDB |
| Condra (1996) | GENETIC correlates of in vivo viral resistance to indinavir, a human immunodeficiency virus type 1 protease inhibitor | J. Virol. 70 (12), 8270-8276 (1996) | 1e-130 | 421 421PR |
421 421PR |
100 | HIVDB |
| Cong (2006) | THE Fitness Cost of Mutations Associated with Human Immunodeficiency Virus Type 1 Drug Resistance Is Modulated by Mutational Interactions | J. Virol. 81 (6), 3037-3041 (2007) | 1e-172 | |
4 4RT |
0 | Laboratory/experimental isolate |
| Coovadia (2008) | PERSISTENT Minority K103N Mutations among Women Exposed to Single-Dose Nevirapine and Virologic Response to Nonnucleoside Reverse-Transcriptase Inhibitor-Based Therapy | Clin. Infect. Dis. (2009) In press | 1e-168 | |
15 15RT |
0 | Unpublished |
| Corbet (1999) | ENV sequences of simian immunodeficiency viruses from chimpanzees in Cameroon are strongly related to those of human immunodeficiency virus group N from the same geographic area | J. Virol. 74 (1), 529-534 (2000) | 1e-147 | 1 1PR 1RT 1IN |
2 1PR 1RT 2IN |
50 | HIVDB |
| Cornelissen (1997) | POL gene diversity of five human immunodeficiency virus type 1 subtypes: evidence for naturally occurring mutations that contribute to drug resistance, limited recombination patterns, and common ancestry for subtypes B and D | J. Virol. 71 (9), 6348-6358 (1997) | 1e-126 | 42 42PR 42RT |
42 42PR 42RT |
100 | HIVDB |
| Cornelissen (2000) | SPREAD of distinct human immunodeficiency virus type 1 AG recombinant lineages in Africa | J. Gen. Virol. 81 (Pt 2), 515-523 (2000) | 2e-86 | 20 20PR 20RT |
21 21PR 21RT |
95 | HIVDB |
| Courgnaud (1992) | GENETIC differences accounting for evolution and pathogenicity of simian immunodeficiency virus from a sooty mangabey monkey after cross-species transmission to a pig-tailed macaque | J. Virol. 66 (1), 414-419 (1992) | 4.2 | 1 1PR 1RT 1IN |
2 2RT |
50 | HIVDB |
| Courgnaud (2001) | CHARACTERIZATION of a novel simian immunodeficiency virus from guereza colobus monkeys (Colobus guereza) in Cameroon: a new lineage in the nonhuman primate lentivirus family | J. Virol. 75 (2), 857-866 (2001) | 1e-76 | 3 1PR 1RT 3IN |
3 1PR 3RT 3IN |
100 | HIVDB |
| Courgnaud (2002) | CHARACTERIZATION of a Novel Simian Immunodeficiency Virus with a vpu Gene from Greater Spot-Nosed Monkeys (Cercopithecus nictitans) Provides New Insights into Simian/Human Immunodeficiency Virus Phylogeny | J. Virol. 76 (16), 8298-8309 (2002) | 4e-97 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Courgnaud (2003) | PARTIAL Molecular Characterization of Two Simian Immunodeficiency Viruses (SIV) from African Colobids: SIVwrc from Western Red Colobus (Piliocolobus badius) and SIVolc from Olive Colobus (Procolobus verus) | J. Virol. 77 (1), 744-748 (2003) | 1e-149 | 1 1PR 1RT |
5 5RT 5IN |
20 | HIVDB |
| Courgnaud (2003) | IDENTIFICATION of a New Simian Immunodeficiency Virus Lineage with a vpu Gene Present among Different Cercopithecus Monkeys (C. mona, C. cephus, and C. nictitans) from Cameroon | J. Virol. 77 (23), 12523-12534 (2003) | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Couto-Fernandez (2006) | PHYLOGENETIC Analysis of Brazilian HIV Type 1 Subtype D Strains: Tracing the Origin of This Subtype in Brazil | AIDS Res. Hum. Retroviruses 22 (2), 207-211 (2006) | 0 | 5 5IN |
10 3PR 5RT 5IN |
50 | HIVDB |
| Crandall (1999) | PARALLEL evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection | Mol. Biol. Evol. 16 (3), 372-382 (1999) | 1e-121 | 41 41PR |
41 41PR |
100 | HIVDB |
| Crandall (1999) | ADVANCES in understanding the evolution of HIV | AIDS 13, S39-S47 (1999) | 1e-102 | |
49 49PR |
0 | Evolution/quasispecies study |
| Crowell (2003) | OPTIMIZATION of Oligonucleotide Ligation Assay for Detection of Drug Resistance Mutations in Non-Subtype B HIV-1 | Unpublished | 1e-133 | |
18 17PR 18RT |
0 | ARV Rx and/or other data are N/A |
| Cunningham (2002) | DEVELOPMENT of resistance mutations in women receiving standard antiretroviral therapy who received intrapartum nevirapine to prevent perinatal human immunodeficiency virus type 1 transmission: A substudy of pediatric AIDS clinical trials group protocol 316 | J. Infect. Dis. 186 (2), 181-188 (2002) | 5e-92 | |
79 79RT |
0 | ARV Rx and/or other data are N/A |
| D'Arrigo (2007) | GP41 Sequence Variability in HIV Type 1 Non-B Subtypes Infected Patients Undergoing Enfuvirtide Pressure | AIDS Res. Hum. Retroviruses 23 (10), 1296-1302 (2007) | 0 | |
3 3RT |
0 | Case report(s) / study subset |
| Damond (2004) | POLYMORPHISM of HIV-2 protease gene and selection of drug resistance mutations in HIV-2 infected patients treated with protease inhibitors | J. Clin. Microbiol. (2004) In press | 5e-25 | |
94 94PR |
0 | Pending |
| Damond (2006) | IDENTIFICATION of a highly divergent HIV type 2 and proposal for a change in HIV type 2 classification | AIDS Res. Hum. Retroviruses 20 (6), 666-672 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Daniel (1993) | SIMIAN immunodeficiency virus from African green monkeys | J. Virol. 62 (11), 4123-4128 (1988) | 1e-33 | |
1 1RT |
0 | Gene fragment(s) |
| Dash (2007) | EXCEPTIONAL molecular and coreceptor-requirement properties of molecular clones isolated from an Human Immunodeficiency Virus Type-1 subtype-C infection | Retrovirology 5 (1), 25 (2008) | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Dazza (2003) | CHARACTERIZATION of a novel vpu-harboring simian immunodeficiency virus from a Dent's Mona monkey (Cercopithecus mona denti) | J. Virol. 79 (13), 8560-8571 (2005) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| De Arellano (2007) | IMPACT of Ethnicity and HIV Type 1 Subtype on Response to First-Line Antiretroviral Therapy | AIDS Res. Hum. Retroviruses 23 (7), 891-894 (2007) | 1e-134 | |
10 10PR 1RT |
0 | Pending |
| de Baar (2001) | NATURAL residues versus antiretroviral drug-selected mutations in HIV type 1 group O reverse transcriptase and protease related to virological drug failure in vivo | AIDS Res. Hum. Retroviruses 16 (14), 1385-1394 (2000) | 2e-17 | 5 5PR 5RT |
5 5PR 5RT |
100 | HIVDB |
| De Maio (2008) | MOLECULAR characterization of the vif accessory gene of HIV-1 from perinatally infected children with different rates of disease progression | Unpublished | 0.032 | |
6 6IN |
0 | Gene fragment(s) |
| de Mendoza (2005) | RESISTANCE to non-nucleoside reverse transcriptase inhibitors and non-B subtypes are on the rise among recent HIV-1 infections in Spain | Unpublished | 0 | |
20 19PR 20RT |
0 | Case report(s) / study subset |
| de Oliveira (2008) | HIGH frequency of BF mosaic genomes among HIV-1-infected children from Sao Paulo, Brazil | Arch. Virol. 153 (10), 1799-1806 (2008) | 0 | |
113 51PR 65RT |
0 | Pending |
| De Pasquale (2004) | DIFFERENCES in HIV-1 pol sequences from female genital tract and blood during antiretroviral therapy | Unpublished | 0 | |
39 39PR 39RT |
0 | ARV Rx and/or other data are N/A |
| de Ronde (2001) | ESTABLISHMENT of new transmissible and drug-sensitive human immunodeficiency virus type 1 wild types due to transmission of nucleoside analogue-resistant virus | J. Virol. 75 (2), 595-602 (2001) | 2e-91 | |
8 8RT |
0 | Case report(s) / study subset |
| De Sa-Filho (2008) | HIV Type 1 pol Gene Diversity and Antiretroviral Drug Resistance Mutations in Santos, Brazil | AIDS Res. Hum. Retroviruses (2008) In press | 1e-154 | 83 83PR 83RT |
83 31PR 83RT |
100 | HIVDB |
| Deacon (1995) | GENOMIC structure of an attenuated quasi species of HIV-1 from a blood transfusion donor and recipients | Science 270 (5238), 988-991 (1995) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Deeks (1999) | NOVEL four-drug salvage treatment regimens after failure of a human immunodeficiency virus type 1 protease inhibitor-containing regimen: antiviral activity and correlation of baseline phenotypic drug susceptibility with virologic outcome | J. Infect. Dis. 179 (6), 1375-1381 (1999) | 1e-127 | 15 15PR 15RT |
16 16PR 16RT |
93 | HIVDB |
| Dehghani (2003) | UNIQUE Pattern of Convergent Envelope Evolution in Simian Immunodeficiency Virus-Infected Rapid Progressor Macaques: Association with CD4-Independent Usage of CCR5 | J. Virol. 77 (11), 6405-6418 (2003) | 1e-101 | |
2 2RT 2IN |
0 | Laboratory/experimental isolate |
| Deho (2008) | SUBTYPE assignment and phylogenetic analysis of HIV-1 strains in patients of Swaziland | AIDS Res. Hum. Retroviruses (2008) In press | 5e-50 | |
7 7PR |
0 | Case report(s) / study subset |
| Delaugerre (2003) | SELECTION of a rare resistance profile in an HIV-1-infected patient exhibiting a failure to an antiretroviral regimen including tenofovir DF | J. Clin. Virol. 32 (3), 241-244 (2005) | 1e-142 | 1 1RT |
1 1RT |
100 | HIVDB |
| Delgado (2001) | ANALYSIS of HIV type 1 protease and reverse transcriptase sequences from Venezuela for drug resistance-associated mutations and subtype classification: a UNAIDS study | AIDS Res. Hum. Retroviruses 17 (8), 753-758 (2001) | 1e-130 | 199 100PR 100RT 1IN |
199 100PR 100RT |
100 | HIVDB |
| Delgado (2002) | IDENTIFICATION of a newly characterized HIV-1 BG intersubtype circulating recombinant form in Galicia, Spain, which exhibits a pseudotype-like virion structure | J. Acquir. Immune Defic. Syndr. 29 (5), 536-543 (2002) | 2e-71 | 9 9PR 9RT 9IN |
9 9PR 9RT |
100 | HIVDB |
| Delgado (2008) | HIGH prevalence of unique recombinant forms of HIV-1 in Ghana: Molecular epidemiology from an antiretroviral resistance study | Unpublished | 0 | |
190 2PR 190RT |
0 | Pending |
| Delobel (2004) | EVIDENCE for compartmentalization of human immunodeficiency virus type 1 in different blood cell types during prolonged suppressive antiretroviral therapy | Unpublished | 1e-129 | |
212 212RT |
0 | Evolution/quasispecies study |
| Demarest (2009) | Virologic failure in first-line human immunodeficiency virus therapy with a CCR5 entry inhibitor, aplaviroc, plus a fixed-dose combination of lamivudine-zidovudine: nucleoside reverse transcriptase inhibitor resistance regardless of envelope tropism | Antimicrob. Agents Chemother. 53 (3), 1116-1123 (2 | 1e-171 | |
14 10PR 13RT |
0 | Pending |
| Demeter (2000) | DELAVIRDINE susceptibilities and associated reverse transcriptase mutations in human immunodeficiency virus type 1 isolates from patients in a phase I/II trial of delavirdine monotherapy (ACTG 260) | Antimicrob. Agents Chemother. 44 (3), 794-797 (2000) | 4e-96 | 67 67RT |
67 67RT |
100 | HIVDB |
| Demeter (2001) | IMPACT of Clinical Reverse Transcriptase Sequences on the Replication Capacity of HIV-1 Drug-Resistant Mutants | Unpublished | 4e-96 | 15 15RT |
15 15RT |
100 | HIVDB |
| Derache (2006) | GENETIC Diversity and Drug Resistance Mutations in Human Immunodeficiency Virus Type 1 from Untreated Patients in Bamako, Mali | Antivir. Ther. (Lond.) (2007) In press | 1e-140 | 94 93PR 94RT |
94 18PR 93RT |
100 | HIVDB |
| Derache (2008) | EVOLUTION of genetic diversity and drug resistance mutations in HIV-1 among untreated patients from Mali between 2005 and 2006 | J. Antimicrob. Chemother. 62 (3), 456-463 (2008) | 1e-145 | 105 105PR 105RT |
105 2PR 105RT |
100 | HIVDB |
| Deroo (2002) | HIV-1 subtypes in Luxembourg, 1983-2000 | AIDS 16 (18), 2461-2467 (2002) | 1e-133 | |
568 284PR 284RT |
0 | ARV Rx and/or other data are N/A |
| Desai (2008) | DIRECT Submission | Submitted (05-AUG-2008) Department of Neurovirology, Nationa | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Desai (2009) | HIV-2 isolate NNVB-HIV-2 from India, partial genome | Unpublished | 1e-24 | |
1 1IN |
0 | Pending |
| Desai (2000) | MOLECULAR cloning and primary nucleotide sequence analysis of a distinct human immunodeficiency virus isolate reveal significant divergence in its genomic sequences | Proc. Natl. Acad. Sci. U.S.A. 83 (21), 8380-8384 (1986) | 6e-74 | |
1 1PR |
0 | Gene fragment(s) |
| Descamps (1997) | SUSCEPTIBILITY of human immunodeficiency virus type 1 group O isolates to antiretroviral agents: in vitro phenotypic and genotypic analyses | J. Virol. 71 (11), 8893-8898 (1997) | 3e-19 | 10 10PR 10RT |
10 10PR 10RT |
100 | HIVDB |
| Deshpande (2004) | MOLECULAR characterization of HIV type 1 isolates from untreated patients of Mumbai (Bombay), India, and detection of rare resistance mutations | AIDS Res. Hum. Retroviruses 20 (9), 1032-1035 (2004) | 1e-146 | 248 122PR 126RT |
248 122PR 126RT |
100 | HIVDB |
| Desire (2001) | QUANTIFICATION o |