<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Neogi (2017)
Title Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden.
Citation Sci Rep
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 83
NumPts 83
Subtype C, B, A, CRF01_AE, D, A + CRF02_AG, CRF02_AG, CRF11_cpx

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
001UG 001UG Unknown    V31I, I72V, T112V, I113V, T124A, T125A, V126F, G134S, I135V, K136Q, D167E, V201I, K211R, K219N, N222K, L234I, S283G  
003SE 003SE Unknown    S39C, L45Q, L101I, S119G, T122I, T125A, T218I, L234V  
004ZM 004ZM Unknown    K14R, D25E, V31I, F100S, L101I, T112V, S119P, T124A, T125A, K136Q, V201I, T206S, T218I, L234I, R269K, D278A, S283G  
005SE 005SE Unknown    M50I, I72V, I113V, T124A, K173R, F181L, V201I, T206S, I208L, A265V  
006CD 006CD Unknown    S17N, V31I, M50T, I72V, L74I, F100Y, T112V, S119P, T124A, T125A, K136Q, V201I, T206S, D207E, K211R, T218I, L234I, N254Q, R269K, D278A, S283G  
007SE 007SE Unknown    S39C, M50I, K211R  
008SE 008SE Unknown    E11D, V31I, M50I, C56Y, A265V  
010BI 010BI Unknown    K14R, S24N, D25E, V31I, M50T, T112V, T124A, T125A, K136Q, D167E, V201I, I208L, K215N, T218L, N222K, L234I, D278T, S283G, R284G  
011BI 011BI Unknown    K14R, S17N, S24D, D25E, V31I, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, I203M, L234I, A265V, R269K, D278A  
012BI 012BI Unknown    K14R, S17N, S24D, D25E, V31I, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, I203M, L234I, A265V, R269K, D278A  
013ET 013ET Unknown    D6E, D25E, V31I, L45I, P90S, F100Y, L101I, T112V, T124N, T125A, D167E, K188R, V201I, K215N, T218L, L234I, A265V, R269K, D278A, S283G  
014ET 014ET Unknown    V31I, M50I, F100Y, L101I, T112V, I113V, T124A, T125A, K136Q, H171Q, F181L, K188R, V201I, L234I, A265V, R269K, D278A, S283G I141A 
016SE 016SE Unknown    D25E, V31I, L101I, T112V, T124A, K136Q, V201I, T218I, L234I, R269K, D278A, S283G  
017BI 017BI Unknown    K14R, S24N, D25E, V31I, F100Y, L101I, T112I, I113L, T124N, T125A, K136Q, V165I, V201I, L234I, D256E, D278A, S283G  
018SE 018SE Unknown    D25E, S39C, M50I, L101I, T112V, T125A, K173R, K188R, V201I, K215N, T218L, L234I, D278A, S283G  
019KE 019KE Unknown    D25E, L45Q, M50T, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, K188R, V201I, T206S, K215N, T218L, Q221R, L234I, A265V, R269K, D278A  
023SE 023SE Unknown    M50I, G193E, T206S, D256E  
026KE 026KE Unknown    E13D, K14R, S24N, D25E, V31I, M50I, F100Y, L101I, T112V, T124S, T125A, K136Q, K160N, K188R, V201I, K219N, N222K, L234I, A265V, D278A  
028SE 028SE Unknown    E11D, A23V, C56S, V201I  
029SE 029SE Unknown    E11D, V31I, I60V, I72V, I84M, L101I, T112V, T124N, T125A, K136Q, G163E, F181L, S195C, V201I, L234I, S283G, D286N  
030SE 030SE Unknown    E11D, K111T, I113V  
031ER 031ER Unknown   V54I D6E, K7R, K14R, S24N, D25E, V31I, I72V, F100Y, L101I, T112V, T124S, T125A, S153A, K173R, V201I, K215N, T218L, L234I, A265V, D278A, S283G G192A 
033ET 033ET Unknown    S24N, D25E, V31I, M50I, I84M, F100Y, L101I, T112V, S119G, T125A, K160N, D167E, K173R, V201I, K215N, L234I, D253E, N254G, D278A  
034SE 034SE Unknown    E10G, A21T, A23V, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I  
035ZA 035ZA Unknown    D6E, K14R, S24D, D25E, V31I, I84L, L101I, T112V, T124A, T125A, I135V, V150A, D167E, V201I, K215N, T218L, L234I, D278A, S283G, R284G  
038US 038US Unknown    E11D, D25E, V31I, L101I, I113V, S119P, V201I, K211Q, T218S, D232E, D256E, S283G  
039KZ 039KZ Unknown    K14R, V31I, T112V, I113V, S119P, T124S, T125A, G134N, K136Q, V201I, T206S, L234I, R269K, S283G, D288N  
040CA 040CA Unknown    E10D, R20K, M50I, I72V, I113V, T124A, K156N, E157Q, T218S, I220L, D253E, D256E  
041SE 041SE Unknown    S24N, D25E, N27H, M50I, F100Y, L101I, K111R, T112V, T124A, T125A, K127R, S153A, D167E, K188R, T206S, K215N, T218L, L234I, R269K, D278A, S283G  
042SE 042SE Unknown    K14R, R20K, V31I, V32I, M50T, I60M, I72V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, S283G  
043SE 043SE Unknown    S24N, D25E, Q53H, F100Y, L101I, T112V, T124A, T125A, V165I, D167E, V201I, K215N, T218L, L234I, R269K, D278A, V281M, S283G  
052SE 052SE Unknown    K7R, F100Y, L101I, G106A, T112V, T124A, T125A, V201I, A205S, T206S, D207E, T218I, L234I, R269K, D278A, S283G  
053SE 053SE Unknown    S17N, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G, D288N K188G 
054ET 054ET Unknown    K14R, L28I, V31I, S39C, L45V, I60V, I72V, F100Y, L101I, T112V, I113V, T124A, T125A, K136Q, V201I, K215N, L234I, D278A P30V 
055ER 055ER Unknown    L45V, A49S, M50I, F100Y, L101I, K111R, T112V, T124A, T125A, K136Q, V201I, K215N, T218I, L234I, R269K, D278A, S283G  
056IT 056IT Unknown    D25E, V31I, I72V, I84M, L101I, T112V, T124A, T125A, D167E, K188R, V201I, K215N, T218L, Q221R, N222K, L234I, A265V, R269K, D278A, S283G, R284G  
057SE 057SE Unknown    K14R, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, G193D, S195C, V201I, L234I, S283G A8D 
058SE 058SE Unknown   T97A E10D, E11D, A23T, V31I, V32I, S39R, M50I, K71Q, K111T, V201I  
059SE 059SE Unknown   E138D E10D, E11D, S24H, L28I, S39N, I72V, T112I, T125A, V126L, I135V, V201I, N222K, R284G  
060SE 060SE Unknown    D25E, V31I, M50T, L101I, T112V, I113V, T124S, T125A, G134D, K136Q, V201I, K211R, T218I, Q221H, L234I, A265V, R269K, D278A, S283G  
061SO 061SO Unknown    K14R, D25E, V32I, L45I, F100Y, L101I, T124A, T125A, K136Q, G193E, V201I, L234I, D256E, D278A, S283G  
062ZA 062ZA Unknown    D25E, V31I, M50I, I72V, L74I, I84M, E96D, L101I, G106A, T112V, T124A, I135V, K136Q, V201I, L234I, R269K, D278A, S283G  
063BI 063BI Unknown    K14R, V31I, L101I, T112V, T124Q, T125A, V126A, I135V, K136R, K173R, G193E, S195T, V201I, T206S, L234I, A265V, R269K, D270H  
064GR 064GR Unknown    E11D, D25E, V31I, I60M, K111R, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
065SE 065SE Unknown    E11D, E13D, I72V, G106A, T112I, I113V, S119P, T122I, T124A, T125A, V126F, G134S, K136Q, D167E, R187K, V201I, N222K, L234I, S283D  
066SE 066SE Unknown    K14R, L28I, V31I, L101I, T112V, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, S283G A23C 
067SE 067SE Unknown    K14R, V31I, S39C, L101I, T112V, T124S, T125A, K136N, D167E, V201I, K215N, T218L, L234I, R269K, D278A, S283G  
068SE 068SE Unknown    K14R, S39C, I60L, L101I, T112V, T124S, V201I, K215N, T218L, L234I, R269K, D278A, S283G  
069SE 069SE Unknown    E11D, K14R, A21T, V31I, I72V, L101V, T112V, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
070SE 070SE Unknown    E11D, A21T, V31I, S39N, D41N, I72V, T112V, S119P, T125A, G134N, I135V, K136Q, D167E, V201I, I208L, L234I, V260I  
071EG 071EG Unknown    E11D, R20K, L101I, T112V, S119P, G134D, G193E, V201I, A205S, S230N, D232E, D256E, D288N  
072SO 072SO Unknown    D6E, S24G, D25E, S39C, L45V, I72V, L101I, T112V, T124N, D167E, K173R, V201I, K215N, T218L, L234I, D278A, S283G G192A 
073NP 073NP Unknown    E10A, K14R, S17N, V31I, K42Q, L101I, T112V, T124A, T125A, K136R, T218I, I220L, L234I, I268L, D278A, S283G  
074SE 074SE Unknown    E11D, S24N, D25E, V31I, L101I, T112V, S119P, T122I, T124N, T125A, V126A, G163E, D167E, V201I, K215N, T218L, L234I, D278A, S283G  
075ZA 075ZA Unknown    D25E, V31I, M50I, I72V, L74I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, Y227F, L234I, A265V, R269K, D278A, S283G  
076SO 076SO Unknown    S24N, D25E, V31I, F100Y, L101I, T112V, T124N, T125A, K136Q, V165I, K173R, V201I, K215N, T218L, L234I, D278A  
077UG 077UG Unknown    I72V, T112V, I113V, S119P, T124A, V201I, T206S, I208L, T210S, Q216R, K219Q, Y227F, L234I, N254R, D256E, S283G  
078SE 078SE Unknown    K14R, A21T, V31I, M50T, I72V, I84M, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, N222K, L234V, S283G  
079KE 079KE Unknown   T97A E11D, K14R, A21T, V31I, I72V, K111I, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, V165I, D167E, V201I, T218S, L234I, S255R, R262L, I268T W235G, L241V, K266N 
081ER 081ER Unknown    N27Q, V31I, F100Y, L101I, G106A, T112V, T125A, K136Q, G193E, V201I, K215N, T218L, I220V, L234I, I251L, D278A  
082SO 082SO Unknown    E11D, S24N, D25E, V31I, L101I, T112V, S119P, T122I, T124N, T125A, V126A, G163E, D167E, V201I, K215N, T218L, L234I, D278A, S283G  
083ET 083ET Unknown    K14R, D25E, V32I, I72V, T124A, T125A, V126L, K136N, V201I, S230N G193N 
084TH 084TH Unknown    E11D, R20K, S39C, M50I, V201I, K215N, S230G, D232E  
085BI 085BI Unknown    K14R, V31I, L101I, T112V, T124N, K136Q, V201I, R224W, L234I, D256E, R269K, D278A, R284G, D286N  
086SE 086SE Unknown    K14R, D25E, L28I, V31I, L45Q, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, R269K, D278A, V281M, R284G, D286N  
087SE 087SE Unknown   T97A E11D, P90Q, L101I, T112V, S119R, T124N, L172F, V201I, T206S, I208L, L234I, R269K, D278A, S283G  
088SE 088SE Unknown    K14R, V31I, M50T, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, V201I, S283G  
089SE 089SE Unknown  Y143R L68V, L74M, E138D, G163R E11D, S17T, A23V, V37I, L101I, K111T, T122I, T206S, T218S, S255R  
090ET 090ET Unknown    D25E, V31I, Q53K, I84M, L101V, T112V, T125A, V201I, K215N, T218L, L234I, I251L, A265V, D278A  
091SE 091SE Unknown    V31I, K42Q, M50I, I84M, P90S, F100Y, L101I, T112V, T122I, T124A, T125A, V201I, I203M, L234I, D278A, S283G  
092SE 092SE Unknown    K14R, S24N, D25E, V31I, V88I, L101I, T112V, T124N, T125A, K136S, V165I, V201I, I203M, E212A, K215N, T218L, N222K, L234I, S283G  
093ER 093ER Unknown    D6E, E10D, D25E, V31I, F100Y, L101I, T112V, T124N, T125A, D167E, V201I, K215N, T218L, L234I, A265V, R269K, D278A, V281M, S283G  
094SE 094SE Unknown    K14R, R20K, V31I, M50T, I60M, I72V, I113V, T122I, T124A, T125A, V126F, G134N, I135V, K136Q, V201I, S283G  
095CD 095CD Unknown    S17N, V31I, I72V, I84M, L101I, T112V, T124A, T125A, I135L, K136Q, K188R, V201I, K211R, Y227F, L234I, A265V, D278A, V281M, S283G, R284G, D286N  
096SE 096SE Unknown    S24N, D25E, P30A, I60V, I72V, L101I, T112V, I113L, T124N, V165I, K188R, V201I, T206S, K215N, T218L, L234I, M275V, D278A, S283D  
097SO 097SO Unknown    V31I, L45Q, L101I, T112V, G163E, V165I, H171L, V201I, T218I, L234I, D278A, S283G  
098GN 098GN Unknown    K14R, V31I, L45Q, L68*, I72V, L101I, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, R269K, D288N N27Y, E48K, E69K 
099US 099US Unknown   L74M K14R, V31I, L45V, M50I, Y99F, L101V, S119P, T125A, V126T, G163E, H171Q, G193E, V201I, T218S, S230N, D256E, D279G  
100ET 100ET Unknown   E138D, V151I S17N, S24D, D25E, N27G, L28I, P30S, Q44H, I72V, V77A, L101I, T112V, T124A, K136Q, K173R, V201I, L234I, A265V, M275V, D278A, S283G  
101SE 101SE Unknown    E11D, K14R, V31I, V32I, L45Q, L101I, I113V, S119P, T125A, V201I, T218I, L234I, D256E  
102SE 102SE Unknown    L45Q, L101I, I113V, S119P, T125A, T218I, L234I, D256E  
103MK 103MK Unknown    S17N, L28I, S39C, I72V, K111T, T124N, I203M, T210I, L234I  
104CM 104CM Unknown    K14R, V31I, S57G, L101I, T112V, T124A, T125A, G134N, K136Q, D167E, V201I, I208L, T218I, L234I