Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Lopez (2016)
Title The genetic diversity and evolution of HIV-1 subtype B epidemic in Puerto Rico.
Citation Direct Genbank Submission
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 1071
NumPts 1071
Subtype B, A, CRF01_AE, B + F


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Page 1   listing Isolate 1 to Isolate 100 from Total 1071 Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
2007-001 2007-001 NRTI NNRTI M41L, D67N, M184V, L210W, T215F  K43E, V60I, T139K, Q145QE, S162A, R206RS, Q207K, R211E R143RG, Y144Y* 
2007-002 2007-002 NRTI NNRTI   I50V, K104R, K122KE, I135T, D177E, F214L R143RG 
2007-003 2007-003 NRTI NNRTI M41L, L210W, T215Y  E44ED, S68G, K82R, V118VI, K122E, Q197QE, T200K, R211K E42EAD 
2007-004 2007-004 NRTI NNRTI   E40ED, A98S, D121H, K122E, T200TA, R211K K46KIM, I47IDNV 
2007-005 2007-005 NRTI NNRTI   V118I, K122P, I142IT, Q145QH, I159IV, T165TI, I178L, F214L, E224D, E233EG, D237DE R143RI, Y146YF, N147NI 
2007-006 2007-006 NRTI NNRTI   I47IN, I50V, K82KR, R83RK, K122KE, D123DE, I142IN, S162C, G196E, E204Q, R211K R78RG, E89EK, V90VA, I94IFL, H96HL, Y146YFIN 
2007-007 2007-007 NRTI NNRTI M184V, K219E  K101Q, K122E, D123S, I142IL, S162C, Q197K, R211K, P243PL G141GR, W229WR 
2007-008 2007-008 NRTI NNRTI  K103N E40EV, K122KE, D123N, I135T, I142V, Q145QE, T200A, Q207E, T240TA K49KI, P157PHQ, E233EK 
2007-009 2007-009 NRTI NNRTI M41L, L74V, Y115F, M184V, L210W, T215Y Y181C E44D, V118I, K122E, I135T, S162N, R172RG, V179I, E203D, H208Y, R211K, H221C, L228R  
2007-010 2007-010 NRTI NNRTI D67G, K70R, K219Q L100I, K103N, P225H K122KE, E138EQ, A158S, D177E, I178M, T200A, K201R, L228R C38CF, N137NT, R143RST, Y144YS, N147NT, V148VA, Y183YC 
2007-011 2007-011 NRTI NNRTI   C38X, E40ED, K64R, I135IV, I178M, T200A, Q207H, R211K, Q242QL I37V 
2007-012 2007-012 NRTI NNRTI M41ML, M184V, T215TNSY K103KN K43KE, V118VI, I135IV, V148VG, T200A, Q207H, R211K  
2007-013 2007-013 NRTI NNRTI M41L, T215Y Y181YC, K238KN K43Q, K102KR, T200A, R211Q W239WG 
2007-014 2007-014 NRTI NNRTI   R83K, V90I, K122P, S134X, T200TA, Q207QHKN, R211K, P243PS C38C*, K46KN, Y144YC, Y146Y* 
2007-015 2007-015 NRTI NNRTI  K238KN K122KE, D123DE, Q174H, R211K, F214L P157PS, W239WG 
2007-016 2007-016 NRTI NNRTI   V60I, R83K, D121Y, K122E, Q145QH, S162A, P176T, G196E, T200A, R211GV E138E*DY 
2007-018 2007-018 NRTI NNRTI  K103N I135T, V148VG, W153X, K154KE, E194EK, R211K, D218E N57NH, Q145QR, Y146YDFV, L149LR, G152GR 
2007-019 2007-019 NRTI NNRTI M184V K101H, K103N, G190A E40ED, V60I, R83K, K122E, I178IM, T200E  
2007-020 2007-020 NRTI NNRTI M41L, A62V, M184V, L210W, T215Y  E40EG, K43Q, S48SP, A98S, V118I, K122E, I135V, S162SN, E169D, G196E, L228R K46KI, K49KEGR, N147N*KY, V148VGMR 
2007-021 2007-021 NRTI NNRTI   S48SL, K104KN, D123E, I135M, S162C, E169ED, T200DE N54NI, R72R*, Y144YS, Q145QHL, V148VA, K201K*, W239WL 
2008-026 2008-026 NRTI NNRTI   I37X, C38X, T39X, E40X, S48ST, K49KR, I50IV, E53ED, V60VI, R83K, K122E, D123E, S134SR, G196E, R211RK E36*HQY, K46K*, G51GW, F124FI, A129AE, F130FY, Y144Y*KN, Q145QK, V148VE 
2008-027 2008-027 NRTI NNRTI   R83K, D123E, I178V, I202IV I37IFLV, P157PQ, W229WG 
2008-028 2008-028 NRTI NNRTI  K103N, V106VAIT, Y188YC K102KEGR, K122KE, K154KE, K173E, T200A, R211K I132IR, W153WGLV 
2008-029 2008-029 NRTI NNRTI  K103N V60I, K102KR, I135T, R211K I142DV 
2008-030 2008-030 NRTI NNRTI A62V, K70R, M184V, K219Q P225PH K64R, T69N, D123E, I135T, V179VI, G196E, L210F, F214L, L228R, Q242QL R143RI, Q145QKR, W153WR, K154KT, P157PS 
2008-031 2008-031 NRTI NNRTI   K43KDEN, D123E, Q197K, R211K G155GE 
2008-032 2008-032 NRTI NNRTI K65R, V75M K103N, Y181C, Y188H T39TI, E40EQ, S68SR, T69X, K122E, I135T, R172RK, T200I, E204A, R211S, F214L, H221Y I37IFLV 
2008-033 2008-033 NRTI NNRTI M184V, K219R  T39TA, K102Q, K103R, V118I, K122KE, I135K, T200A, I202IV, R211K, F214L, L228H V148VL 
2008-034 2008-034 NRTI NNRTI   R83RK, D123E, I135T, T139TR, D177DN, T200AE, I202IV, R211K I37IFLV, C38C* 
2008-035 2008-035 NRTI NNRTI M41ML, L210LW, T215TNSY  E40EV, V60VI, D123E, I135IT, E138EA, I142IN, K166R, K173E, V179VI, G196E, R211RK P140PQ, Y144YD 
2008-036 2008-036 NRTI NNRTI   R83K, K122E, D123E, I142ILM, G196E I37IFLV, R143RT, Y144YHPS 
2008-037 2008-037 NRTI NNRTI D67N, K70R, L74V, M184V, K219E L100I, K103N T39TA, V60I, T69N, K122E, I142IF, Y144X, G196E, T200A, Q207QK, R211Q  
2008-038 2008-038 NRTI NNRTI M184MV  T39TI, V90VI, A98S, I135MV, I142IKN, N147NK, Q174QR, T200IV I37IFLV, V148VALS 
2008-039 2008-039 NRTI NNRTI   I50V, R83RK, V118I, K122E, D123N, Q174QEGR, I195IT, T200TIM, E203EG, Q207QE, F214L, V241VG A129AT, R143RG, Y144YH, Q145QR, N147ND, K154KPQT, P157PS, L193L*, Q222QE 
2009-002 2009-002 NRTI NNRTI   K122E, I142IL, R211KQ I37IFLV, N147NT 
2009-003 2009-003 NRTI NNRTI   D123E, I135V, T139I, F171FL, D177DE, I178L, V179VI, V241VA I37IFLV, E40E*DY, E42EV, K46K*, G51GW, K66KI, G141GR, K154KT, Q174Q*, D186DE, S191ST, R199RS, K201K*NY, Y232YD 
2009-005 2009-005 NRTI NNRTI   T39TS, E40ED, S48X, K122KE, I142IV, S162C, Q174QR, D177E, I178M, T200TI, R211KM, Q242QLR, P243PA, I244IL I37IFLV, Y144Y*KN, Q145QKR, V148VL, K154KT, L168LS 
2009-007 2009-007 NRTI NNRTI M41L, D67N, M184V, L210W, T215Y, K219N K103N, V108VI, M230L T39TS, E44D, S48ST, K49R, V60I, V106I, V118VI, K122E, S162C, E169D, T200A, E203D, Q207E, R211K I37IFLV, G45GR, V111VGLW, A129AS, P140PQ, Y146YF 
2009-008 2009-008 NRTI NNRTI  K103KN V60I, R83K, D121DY, K122E, T139TA, I142IM, R211K I37IFLV, K46KIR, G51GW, E53E*, L120LF 
2009-009 2009-009 NRTI NNRTI   E53ED, D86DG, D123E, T200TI, I202IV, Q207AE, R211RK I37IFLV, C38CY, K46KI, E89EG, L149LI 
2009-010 2009-010 NRTI NNRTI   I47IN, S48SFL, K103R, R211K, F214L I37IFLV, K43K*, R72RI, K102K*NY, T107TI 
2009-011 2009-011 NRTI NNRTI  V179D E40EQ, R83K, D86DE, D121DE, K122KDEN, R211K I37IFLV, K46KN, Y56YH, K82KQ, T84TS, L92LF, H96HD, D123DV, F124FHLY, I135IEKV, A158AE 
2009-012 2009-012 NRTI NNRTI M184V  T39TILP, E42ED, I50V, R83K, D123E, I142IV, K166R, I178M, R211K I37IFLV, K43KHNQ, Y144YHPS 
2009-013 2009-013 NRTI NNRTI  V179DE E40ED, I50IM, K122E, D123E, Q145QE, G196E, I202IV, F214L I37IFLV, L149LF 
2009-014 2009-014 NRTI NNRTI   E40ED, I178M, T200A, E204Q, Q207D, R211K I37IFLV, W153W*R, K154KT, F160FC, F171FLPS, Q182QH 
2009-015 2009-015 NRTI NNRTI M41L, M184V, T215F A98G, K238KN K43KN, Q145QE, V179VI, I202IV, R211K, F214FL W239WG 
2009-016 2009-016 NRTI NNRTI  P236PL S162SN, S163SAGT, K166KR, I167IF, N175H, V179I, L187LF, T200AV, Q242QH I37IFLV, K46K*, Y146YD, P157PLR, F160FC, I180IT, D185DA, I195IRS, E204E*, G213G*R, Q222QH, W229WG 
2009-017 2009-017 NRTI NNRTI  K103N, V108I, P236PL T39TI, V60I, R83K, D123E, F124FL, R125RG, I135T, Q145QE, K173R, I178IM, V179VI, L187LF, W212WG I37IFLV, G51GEKR, R143RK, P150PT, K154KT, F160FCLW, Q174*IKL, Q182QH, D186DH, Q222QH 
2009-018 2009-018 NRTI NNRTI   E40ED, V60I, D123DE, I135T, I142V, T165IM, Q174QR, D177DE, T200TR, E204K, R211RS, W212WR, K220X I37IFLV, G141GW, R143RI, N147NI, L168L*, N175NS, I178IR, R199RS 
2009-019 2009-019 NRTI NNRTI   R83RK, K102KN, S134SC, T165I, K166KR, F171FL, K173KE, R211K, F214L, D237DH I37IFLV, C38CY, S48S*, D76DN, P150PL, I167IS, L168L*, I180IMV, Q182QE, Y183YCDG, D185DG, D186DE, L187LV, S191SA 
2009-020 2009-020 NRTI NNRTI   V35X, E36X, I37X, I50IM, R83K, D123E, Q145QH, L168X, F171X, K173KQ, P176PS, T200N, I202V, R211K, F214FV K82KQ, Y144YS, L149LR, G152GE, K154KT, A158AV, F160FC, R172RS 
2009-022 2009-022 NRTI NNRTI  K103N R83K, K101KQ, V106VI, S162C, I178L I37IFLV, K46KI, L149LR 
2009-023 2009-023 NRTI NNRTI  V179D K46KR, I47IL, K49KR, V60VI, K122E, D123EG, G196E, F214L I37IFLV, Y146YF, N147NT 
2009-024 2009-024 NRTI NNRTI   K122E, I135V, I159V, Q174R, I202V, R211E, Q242QH I37IFLV, C38CNSY, N147NT, L193L* 
2009-025 2009-025 NRTI NNRTI M184V, K219R K103N E40ED, K122E, D123K, I135T, T165I, E169D, F171FL, T200A, F214L, D218E, L228R, Q242QR I37IFLV, K66KI, S117SFL, V118N, R206RIS, H235HL 
2009-026 2009-026 NRTI NNRTI   I37X, E40ED, R83RK, K102KN, K103R, D123E, S162C, T165TI, P176X, G196GV, Q197X, T200X, I202IT, R211RK, W212WG, F214FL K82KQ, T131TS, F171FS, N175NK, D192DY, L193LV 
2009-027 2009-027 NRTI NNRTI  K103N E40ED, K46KE, I47IN, S48SL, R83RK, Q145QE, R211K I37IFLV, A129AV 
2009-028 2009-028 NRTI NNRTI   S48T, K49R, V60I, N147NK, E169D, Q174EK, T200A, Q207E, R211RKM I37IFLV, G112GV, T131TS, G141GW, F160FC 
2009-029 2009-029 NRTI NNRTI  K238KN T39E, D123E, I132IV, I142T, F171FL, K173KT, Q174QH, D192DE, R211K I37IFLV, K64K*, D86DAE, L120L*, F130FL, H235HR, D237DG 
2009-030 2009-030 NRTI NNRTI   T39A, E40ED, K49KR, R83K, V118VI, K122KE, S162SDGN, T165I, K166KT, E169D, I178IL, T200A, E204EK, Q207AE, R211K, F214L, D237DN, K238KI I37IFLV, Y144Y*, Q145QK, F160FS, P170PA, R172RI, D186DH, L187LS 
2010-001 2010-001 NRTI NNRTI M41L, L210LW, T215Y  R83K, K173N, Q174K, I178L, T200X, K201X, E203D, E204EQ, R206X, Q207X, R211K Q145QK 
2010-002 2010-002 NRTI NNRTI   T39A, E40D, D121H, K122E, D123S, S162A, Q174K, D177E, T200N, Q207E, F214L V148VE, G155GV 
2010-003 2010-003 NRTI NNRTI T215C K103N A98S, D123E, I135T, K154X, I195L, T200E, Q207E, R211K W153W* 
2010-004 2010-004 NRTI NNRTI D67DG, M184MV, T215TS  V60VI, S68X, T69TN, K122KE, A158AS, S162X, K166KR, N175NH, V179VI, T200X, E204EQ, Q207QE, R211RK, P243PS N54ND, N57ND 
2010-005 2010-005 NRTI NNRTI   I135T, T200A, R211K, F214L, Q242QL L149LF 
2010-006 2010-006 NRTI NNRTI   I50IM, D123E, I135T, I142IF, V148VG, A158X, S163ST, M164X, T165X, E169ED, F171FL, N175H, T200X, K201KQ, Q207QE, F214L W71WC, K73KE, L92I, G93GR, P150PL, L168L*, P170PA, K220KR 
2010-007 2010-007 NRTI NNRTI   F214L, Q242QL H235HL 
2010-008 2010-008 NRTI NNRTI   T39TK, S48E, K64KR, R211RK D76DN, A114AE 
2010-009 2010-009 NRTI NNRTI  K103KN T39TA, S48X, I50IV, V60VI, K101KQ, V106X, K122KE, D123DE, I135IV, I142IV, K173X, D177DE, L193LF, T200TA, I202IV, R211X, I244IV I47IT, E89EG, P140PQ, G141GE, R143RK, V148VA, L149LR, P157PR, T165TR, L187LS, L209LV, G231GV 
2010-010 2010-010 NRTI NNRTI   R83K, K103R, V118I, K122E, I135T, T139V, T200TA, R211K, F214L V148VL 
2010-011 2010-011 NRTI NNRTI   K122E, D123E, Q197E, R211K D76DN, V148VL, G152GE 
2010-012 2010-012 NRTI NNRTI  K103N, V108I V60VI, V90VI, I135V, I159IV, E169D, K173KT, D177DE, L187LF, E194EQ, I195X, L210I, R211RK, F214L, D218DE, L228LR, K238X K154KN, S156SA, P170PA, D185DA, D186DH, L193LS, T216TR, H221HD, Q222QH, W229W*, W239W* 
2010-013 2010-013 NRTI NNRTI V75VL  T39X, T69TP, F77FS, K82KR, K102KR, V106VI, K122E, D123DN, I135T, S162X, F171X, Q174X, I178M, L187LF, T200TA, I202X, Q207E, R211RK, F214L N54NT, E89EK, Q91QK, L92LF, P95PQ, H96HN, F130FL, A158AG, Q182QH, D185DA, R199RS 
2010-014 2010-014 NRTI NNRTI   T39X, K49R, I50V, V60I, R83K, K122E, D123K, Q145QH, F171FL, E194EQ, I195IT, Q207A P140PQ, V148VL, L149LV, K154KI, F160FC 
2010-015 2010-015 NRTI NNRTI   T69TA, V118VI, K122E, D123E, D177N, G196E, R211X, I244V P157PS, R206RI 
2010-016 2010-016 NRTI NNRTI   K122E, D123E, I135T, T165I, D192DN, G196E, F214FL P157PS, L193L* 
2010-017 2010-017 NRTI NNRTI V75L  T39A, T69X, F87FL, K103R, K122E, I135T, S156X, S163SC, Q174K, I180V, D192DE, E194EG, G196E, Q197QP, T200A, Q207E, F214L L168LF, N175NK, D185DG, D186DY 
2010-019 2010-019 NRTI NNRTI   S48ST, E53ED, R83RK, K122KE, D123DN, K166KR, K173KQ, R211RK, Q242QL P140PQ, V148VM, L149LM, L193L*, Y232YN 
2010-020 2010-020 NRTI NNRTI   T39N, V60I, K122E, D123N, I135T, D177E, I178M, G196E, T200TA, E204A, R211K P150PS 
2010-021 2010-021 NRTI NNRTI  V179D D121Y, K122E, D123E, I135L, S162C, K166KN, E169D, D177E, T200A, R211S L120L*, R143RT, P157PS, F160FC, L209LR, L234LR 
2010-022 2010-022 NRTI NNRTI  K103N R83RG, D86DN, K102KE, S105ST E53E*, T84TP, Q85QK, Q91QK, I94IN, P95PT, L120L*, A129AE 
2010-023 2010-023 NRTI NNRTI   K122E, D123E, T200TA, R211K, V241VL V148VL, S162SI, D185DV 
2010-025 2010-025 NRTI NNRTI   D123E, I135V, I142T, S162C, I178L, R211K  
2010-026 2010-026 NRTI NNRTI   E53ED, V60X, R72X, F77X, R78X, E79ED, L80X, K82X, R83RG, D86DN, V90I, Q91X, I94IL, K104X, D121DE, D123DE, I135T, R211RK, F214L D76DY, N81NK, Q85Q*, L92LF, P95PS, S105S*, D113DN, P119PH, L120L*, F124FI, R143RI, K223KI 
2010-027 2010-027 NRTI NNRTI   T200A, R211Q, I244V  
2010-028 2010-028 NRTI NNRTI   S68SR, A98S, K102KR, D123E, V148X, E194EG, G196X, T200A, R211A D76DN, Y144YD, Y183YS, H198HD 
2010-029 2010-029 NRTI NNRTI   K122P, D123DE, K166R, F171FL, D177E, G196E, T200X, K223KT, Q242QL K154KT, P157PS, F160FC, W229W*, Y232YS 
2010-030 2010-030 NRTI NNRTI   R83RK, V118I, D123E, I135T, T165I, F171FL, K173KT, T200X, R211K, F214L K154KN, F160FC, R172RS, D185DA, R199RS 
2010-031 2010-031 NRTI NNRTI   I135T, G196E, T200A D76DN, G99GR, V148VE 
2010-032 2010-032 NRTI NNRTI   T39X, K103R, K122E, R211K, F214L V148VL 
2010-033 2010-033 NRTI NNRTI   K43KR, V60VI, R83K, D123E, Y144X, Q145QE, W153X, K173KT, Q174QK, V179VI, R199RK, T200X, R211K P140PL, V148VE, L168L*, Q182QH, K201K*, Y232Y* 
2010-034 2010-034 NRTI NNRTI   V60I, R83K, D123E, I135V, G196E, R211RK  
2010-035 2010-035 NRTI NNRTI K219KE Y181YC D123E, K166KR, I178M, V189VA, G196E, T200A, R211K D76DN 
2010-036 2010-036 NRTI NNRTI   A98S, K102Q, T139TI, Q145QH, S162A, F171FL, R172X, E194X, I195IR, T200TA, Q207X, H235HN F160FC, L209LR 
2010-037 2010-037 NRTI NNRTI  K101E, E138K K82R, K103R, K122E, K126KR, T139E, I142T, I178M  
2010-038 2010-038 NRTI NNRTI M184MV  K122E, I135T, I142IM, T165TI, K166KT, L168X, F214L F171FS, R172RS 
2010-039 2010-039 NRTI NNRTI M184V K103N, P225PH, K238KT V60VI, V118I, D123E, I142T, A158AS, T165L, Q174R, G196GE, F214L, L228H N137NT 
2010-040 2010-040 NRTI NNRTI  K103N, P225PH A98S, I135T, W153X, K154X, P170PT, K173X, Q174X, D177DE, L187LF, I195IT, I202IV, R211K P140PQ, G152GV, Q182QH, L193LS, P226PL 
2010-041 2010-041 NRTI NNRTI   D123E, I135V, I142T, S162C, I178L, R211K, Q242QL D76DN, Y127YF, V148VE 
2010-042 2010-042 NRTI NNRTI   Q145QH, F160X, F171FL, Q174K, E194EQ, Q197P, R199RT, T200E, R211K Y144YS, V148VL, L168L*, R172RS, D186DH, K220KE