<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Raugi (2013)
Title Complex patterns of protease inhibitor resistance among antiretroviral treatment-experienced HIV-2 patients from Senegal: implications for second-line therapy.
Citation Antimicrob Agents Chemother
SelectedGene PR
SelectedSpecies HIV2
SelectedType Clinical
NumIsolates 154
NumPts 43
Host Human

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 154 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
H2A002 13RT005 IDV 27  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  13RT006 IDV 37  N83D T12L, V20I, T43S, V71I, T77I Y14H, D17G, D40S, T56V, V62A, N68G, R70K, L99F 
H2A003 13RT007 IDV I82F  T43S D17G, P19A, D40S, G51R, R70K, L99F 
H2A004 13RT015 IDV 35  I46V, A73T A34R, F85L, I89T D17G, D40E, N41D, L99F 
H2A005 13RT016 IDV 76   D17E, E21D, T43S, R70T D40S, N41D, K65R 
  13RT017
Consensus 
IDV 95   D17E, T43S, R70T D40S, N41D 
  clone: 133 IDV 95   D17E D40S, N41D, R70K 
  clone: 134 IDV 95   D17E, E21D, T43S, R70T D40S, N41D, K65R 
  clone: 140 IDV 95   D17E, T43S, R70T D40S 
H2A006 13RT018 Unknown, IDV 15   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  13RT019 Unknown, IDV 32   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  13RT020
Consensus 
Unknown, IDV 54   I36V, T43S, R70T Y14L, D17G, D40S 
  clone: 135 Unknown, IDV 54   I36V, T43S, R70T Y14L, D17G, D40S 
  clone: 136 Unknown, IDV 54   I36V, T43S, T74A Y14L, D17G, D40S, K65E, D79E 
  clone: 137 Unknown, IDV 54   I36V, T43S, R70T Y14L, D17G, D40S, D79E 
  clone: 138 Unknown, IDV 54   V10I, I15V, I36V, T43S, R70T Y14L, D17G, D40S 
  clone: 139 Unknown, IDV 54   T43S, K65Q Y14L, D17G, D40N 
  13RT021
Consensus 
Unknown, IDV 94   T43S Y14L, D17G, D40S, D79E 
  clone: MK21 Unknown, IDV 94   T43S, R70T Y14L, D17G, D40S, V62A 
  clone: MK22 Unknown, IDV 94   T43S, R70T Y14L, D17G, D40S, V62A 
  clone: MK23 Unknown, IDV 94   T43S, R70T Y14L, D17G, D40S, V62A 
  clone: PL26 Unknown, IDV 94   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: PL32 Unknown, IDV 94   T43S Y14L, D17G, D40S, D79E 
  clone: PL33 Unknown, IDV 94   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: PL34 Unknown, IDV 94   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  13RT022
Consensus 
Unknown, IDV 94   T43S Y14L, D17G, D40S, D79E 
  clone: JS24 Unknown, IDV 94   T43S Y14L, D17G, D40S, D79E 
  clone: JS25 Unknown, IDV 94   T43S Y14L, D17G, D40S, D79E 
  13RT023 Unknown, IDV 94   I36V, T43S, R70T Y14L, D17G, D40S 
H2A007 13RT024 IDV, LPV 111   T43S E16G, D17G, D40N, N41D, K65E 
  13RT025
Consensus 
IDV, LPV 116   T43S E16G, D17G, D40S, N41D, K65E 
  clone: MK13 IDV, LPV 116   T43S E16G, D17G, D40S, N41D, K65E, R70K 
  clone: MK14 IDV, LPV 116   T43S E16G, D17G, D40S, N41D, K65E 
  clone: MK15 IDV, LPV 116   I15V, T43S E16G, D17G, D40S, N41D, K65E 
  clone: MK16 IDV, LPV 116   T43S E16G, D17G, D40S, N41D, K65E 
  13RT026
Consensus 
IDV, LPV 133   T43S E16G, D17G, D40S, N41D, K65E, L99F 
  clone: MK26 IDV, LPV 133   T43S E16G, D17G, D40S, N41D, K65E, L99F 
  clone: MK27 IDV, LPV 133   T43S E16G, D17G, D40S, N41D, K65E, L99F 
  clone: MK34 IDV, LPV 133   T43S E16G, D17G, D40S, N41D, K65E, L99F 
  clone: PL19 IDV, LPV 133   T43S E16G, D17G, D40S, K65E, M95T 
  clone: PL20 IDV, LPV 133   T43S D17G, D40S, N41D, V62A, K65E, L99F 
  13RT027
Consensus 
IDV, LPV, Unknown 148 I54M  E21K, T43S, V71I E16G, D17G, D40S, N41ND, K65E, L99F 
  clone: MK67 IDV, LPV, Unknown 148 I54M  E21K, T43S, V71I E16G, D17G, D40S, N41D, K65E, L99F 
  clone: MK80 IDV, LPV, Unknown 148 I54M  E21K, T43S, V71I E16G, D17G, D40S, K65E, L99F 
  13RT028
Consensus 
IDV, LPV, Unknown 148 I54M  T43S, V71I E16G, D17G, D40S, N41D, K65E, L99F 
  clone: MK68 IDV, LPV, Unknown 148   T43S, V71I E16G, D17G, D40S, N41D, K65E, L99F 
  clone: MK81 IDV, LPV, Unknown 148 I54M  W6*, T43S, V71I, F85L V10E, D17G, E21R, G27E, G39R, D40S, N41D, K65E, L99F 
  clone: MK82 IDV, LPV, Unknown 148 I54M  T43S E16G, D17G, D40S, N41D, K65E 
  13RT029
Consensus 
IDV, LPV, Unknown 148 I50V, I54M I89V K7R, E21K, T43S, I64V, V71I, F85L V10E, D17G, D40S, K65E, L99F 
  clone: JS33 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, E21K, G27X, T43S, I64V, V71I, F85L V10E, D17G, D40S, K65E, L99F 
  clone: JS34 IDV, LPV, Unknown 148 I54M, I84V I89V K7R, E21K, T43S, V71I, F85L V10E, D17G, D40S, K65E, L99F 
  clone: JS37 IDV, LPV, Unknown 148 I50V, I54M V33I, I89V K7R, E21K, T43S, I64V, V71I, F85L V10E, D17G, D40S, K65E, L99F 
  clone: JS38 IDV, LPV, Unknown 148 I50V, I54M V33I, I89V K7R, E21K, T43S, I64V, V71I, F85L V10E, D17G, D40S, K65E, L99F 
  clone: JS39 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, T43S, I64V, V71I, F85L V10E, D17G, E21R, D40S, K65E, L99F 
  clone: JS40 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, T43S, I64V, V71I, F85L V10E, D17G, E21R, D40S, K65E, G94D, L99F 
  clone: JS41 IDV, LPV, Unknown 148 I54M, I84V I89V K7R, T43S, V71I, F85L V10E, D17G, E21R, D40S, K65E, L99F 
  13RT030 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, T12I, E21K, T43S, V71I, F85L, M95MV V10E, D17G, S31T, D40S, N41D, T56V, V62I, I75V, L99F 
  13RT031 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, T12I, E21K, T43S, V71I, F85L, M95V V10E, D17G, V22M, S31T, D40S, N41D, T56V, I75V, L99F 
  13RT032 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, T12I, E21K, T43S, V71I, F85L V10E, D17G, V22M, S31T, D40S, N41D, T56V, I75V, L99F 
H2A009 13RT033
Consensus 
IDV 43   S4P, K7E, T43S, T91A, A92T D17G, G39GR, D40S, N68G 
  clone: 122 IDV 43   S4P, K7E, T43S, T91A, A92T D17G, D40S, N68G 
  clone: 4147 IDV 43   S4P, K7E, T43S, T91A, A92T D17G, G39R, D40S, N68G 
  13RT034 IDV, LPV 87   S4P, K7E, T43S, T91A, A92T D17G, D40S, G52R, V62I, N68G 
  13RT035 IDV, LPV 162   S4P, K7E, T43S, T91A, A92T D17G, D40S, N68G 
  13RT036
Consensus 
IDV, LPV 179   S4P, K7E, T43S, T91A, A92T D17G, D40S, N68G 
  clone: MK60 IDV, LPV 179   S4P, K7E, T43S, T91A, A92T D17G, D40S, N68G 
  clone: MK61 IDV, LPV 179   S4P, K7E, T43S, T91A, A92T D17G, D40S, N68G 
  13RT037 IDV, LPV 197   S4P, K7E, T43S, T91A, A92T D17G, D40N, V62I, N68G 
H2A010 13RT038
Consensus 
Unknown, IDV 34   I15IV, T43S D17G, D40N, N41D, R70K 
  clone: 4208 Unknown, IDV 34   V10I, I15V, T43S D17G, D40N, N41D, R70K 
  clone: 4290 Unknown, IDV 34   I15V, T43S D17G, D40N, N41D, R70K 
  clone: 4291 Unknown, IDV 34   T43S D17G, D40N, N41D, K65E, R70K 
  clone: 4292 Unknown, IDV 34   T43S, F85L D17G, D40N, N41D, R70K 
  clone: 4293 Unknown, IDV 34   I15V, T43S R8K, D17G, D40N, N41D, R70K 
  clone: 4295 Unknown, IDV 34   T43S, F85L D17G, D40N, N41D, R70K 
  13RT039
Consensus 
Unknown, IDV 51   T43S D17G, D40N, N41D, R70K 
  clone: 145 Unknown, IDV 51   T43S, I89M D17G, D40N, N41D, R70K 
  clone: 146 Unknown, IDV 51   T43S D17G, D40N, N41D, R70K 
  clone: 147 Unknown, IDV 51 L90M  T43S D17G, D40N, N41D, R70K 
  clone: 148 Unknown, IDV 51 L90M  T43S D17G, D40N, N41D, R70K 
  clone: 149 Unknown, IDV 51   I15V, T43S D17G, D40N, N41D, R70K 
  clone: 158 Unknown, IDV 51   T43S, I89M D17G, D40N, N41D, R70K 
  clone: 159 Unknown, IDV 51 L90M  T43S D17G, D40N, N41D, R70K, L99F 
  clone: 160 Unknown, IDV 51   T43S D17G, D40N, N41D, R70K 
  clone: 161 Unknown, IDV 51   T43S, I89M D17G, D40N, N41D, R70K, L99F 
  clone: 162 Unknown, IDV 51 I82F I89V T43S D17G, D40N, N41D, R70K 
  13RT040 Unknown, IDV 59 I82F I89V T43S D17G, D40N, N41D, R70K 
  13RT041
Consensus 
Unknown, IDV 67 I82F I89V T43S D17G, D40N, N41D, R70K 
  clone: MK17 Unknown, IDV 67 I82F I89V T43S D17G, D40N, N41D, R70K 
  clone: MK24 Unknown, IDV 67 I82F I89V T43S D17G, D40N, N41D, R70K 
  13RT042
Consensus 
Unknown, IDV 102 L90M I89V T43S D17G, D40N, N41D, R70K 
  clone: MK35 Unknown, IDV 102 L90M I89V T43S, F85L D17G, D40N, N41D, R70K, L99F 
  clone: MK36 Unknown, IDV 102 I82F I89V T43S D17G, D40N, N41D, R70K 
  clone: MK37 Unknown, IDV 102 I82F I89V V10I, T43S D17G, D40N, N41D, R70K 
  clone: MK38 Unknown, IDV 102 L90M I89V T43S, F85L D17G, D40N, N41D, R70K, T77A, L99F 
  clone: PL35 Unknown, IDV 102 L90M  T43S D17G, D40N, N41D, R70K 
  clone: PL36 Unknown, IDV 102 L90M  L5P, T43S D17G, D40N, N41D, R70K 
  13RT043 Unknown, IDV 113 L90M I89V T43S, F85L D17G, D40N, N41D, R70K, L99F 
  13RT044 Unknown, IDV 113  I46V T43S D17G, D40S, N41D, K60R, R70K 
  13RT045 Unknown, IDV 113 V47A, L90M V33I, I89V T43S, V71I, F85L D17G, D40N, N41D, R70K, L99F 
H2A014 13RT046 Unknown, IDV  N88D T43S D17G, D40S, K65E, R70K 
  13RT047
Consensus 
Unknown, IDV 36   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4254 Unknown, IDV 36   T43S D17G, D40S, K60R, K65E, R70K, M95T 
  clone: 4297 Unknown, IDV 36   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4298 Unknown, IDV 36   T43S, A73V D17G, D40S, K60R, K65E, R70K 
  clone: 4299 Unknown, IDV 36   T43S D17G, G35E, D40S, K60R, K65E, R70K 
  clone: 4300 Unknown, IDV 36   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4301 Unknown, IDV 36   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4302 Unknown, IDV 36   T43S D17G, D40S, K60R, K65E, R70K 
  13RT048
Consensus 
Unknown, IDV 54   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 124 Unknown, IDV 54   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 164 Unknown, IDV 54   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 165 Unknown, IDV 54   T43S D17G, G35E, D40S, K60R, K65E, R70K 
  clone: 166 Unknown, IDV 54   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4319 Unknown, IDV 54   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4320 Unknown, IDV 54   T43S D17G, D40S, K60R, K65E, R70K 
  13RT049
Consensus 
Unknown, IDV 100   T43S D17G, D40S, K60R, K65E, R70K 
  clone: MK39 Unknown, IDV 100   K7R, T43S D17G, D40S, K60R, K65E, R70K 
  clone: MK40 Unknown, IDV 100  I50~ T43S D17G, D40S, G51~, G52~, K60R, K65E, R70K 
  clone: MK41 Unknown, IDV 100   T43S D17G, D40S, K60R, K65E, R70K 
  clone: MK49 Unknown, IDV 100   T43S D17G, D40S, K60R, K65E, R70K 
  clone: PL21 Unknown, IDV 100   T43S D17G, V20A, D40S, K60R, K65E, R70K 
  clone: PL22 Unknown, IDV 100   T43S D17G, V20A, D40S, K60R, K65E, R70K 
  clone: PL23 Unknown, IDV 100   T43S D17G, D40S, K60R, K65E, R70K 
  13RT050 Unknown, IDV 134   T43S D17G, D40S, K60R, K65E, R70K 
  13RT051
Consensus 
Unknown, IDV 152   T43S D17G, D40S, K60R, K65E, R70K 
  clone: AL19 Unknown, IDV 152   T43S D17G, D40S, K60R, K65E, R70K 
  clone: AL20 Unknown, IDV 152   T43S D17G, D40S, K60R, K65E, R70K 
H2A015 13RT052 IDV 49 I54M  K7R, T43S, V71I, A92T Y14H, D17G, D40S, N41D, R70K 
  13RT053 IDV 53 I54M  K7R, T43S, V71I, A92T Y14H, D17G, D40S, N41D, R70K 
  13RT054
Consensus 
IDV 84 I54M, I82F  K7R, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  clone: 4303 IDV 84 I54M, I82F  K7R, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  clone: 4304 IDV 84 I54M, I82F  K7R, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  13RT055
Consensus 
IDV 120   T43S Y14H, D17G, D40S, N41D 
  clone: 4321 IDV 120   T43S Y14H, D17G, D40S, N41D 
  clone: 4322 IDV 120   T43S Y14H, D17G, D40S, N41D 
  clone: 4323 IDV 120   T43S Y14H, D17G, D40S, N41D, R70K 
  clone: 4324 IDV 120   T43S Y14H, D17G, D40S, N41D 
  clone: 4325 IDV 120   T43S Y14H, D17G, D40S, N41D 
  clone: 4326 IDV 120   T43S Y14H, D17G, D40S, N41D, R70K 
  13RT056
Consensus 
IDV 137 I54M, I82F  K7R, V10I, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  clone: 4338 IDV 137 I54M, I82F  K7R, V10I, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  clone: 4346 IDV 137 I54M, I82F  K7R, V10I, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  clone: 4347 IDV 137 I54M, I82F  K7R, V10I, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  clone: 4348 IDV 137 I54M, I82F  K7R, V10I, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  clone: 4349 IDV 137 I54M, I82F  K7R, V10I, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
H2A019 13RT057
Consensus 
IDV, Unknown 52 I82IF I89IV V10VI, T43S, N61ND Y14YH, D17G, D40S, K65R 
  clone: 4247 IDV, Unknown 52 I82F I89V V10I, T43S D17G, D40S, K65R 
  clone: 4258 IDV, Unknown 52   T43S, N61D Y14H, D17G, D40S, K65R 
  13RT058 IDV, Unknown 52 I82F I89V V10I, T43S K7N, D17G, D40S, K65R 
H2A020 13RT059
Consensus 
IDV 55 I54M I89V T43S, F85L K7N, D17G, D40N, N41D 
  clone: 4206 IDV 55 I54M I89V T43S, F85L K7N, D17G, D40N, N41D 
  clone: 4207 IDV 55 I50V, I54M I89V T43S, F85L K7N, D17G, D40N, N41D 
  clone: 4237 IDV 55 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  13RT060 IDV 64 I54M G48R, I89V E37K, T43S, V71I, F85L K7N, D17G, G27E, G39R, D40N, N41D, G49R, G51R, G52R 
  13RT061
Consensus 
IDV 91 I54M, I82F I89V T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4259 IDV 91 I54M, I82F I89V V10I, T43S, V71I K7N, P9S, D17G, D40N, N41D 
  clone: 4260 IDV 91 I54M I89V T43S, V71I, F85L K7N, D17G, I36M, D40N, N41D 
  clone: 4309 IDV 91 I54M, I82F I89V T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4310 IDV 91 I54M, I82F I89V T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4311 IDV 91 I54M, I82F I89V T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4312 IDV 91 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4313 IDV 91 I54M, I82F I89V T43S, V71I K7N, D17G, D40N, N41D 
  13RT062
Consensus 
IDV 108 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: 125 IDV 108 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4335 IDV 108 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  13RT063
Consensus 
IDV 125 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4350 IDV 125 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4351 IDV 125 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D, R70K 
  clone: 4352 IDV 125 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4353 IDV 125 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D, R70K 
  clone: 4354 IDV 125 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4355 IDV 125 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: 4356 IDV 125 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  13RT064
Consensus 
IDV, LPV, Unknown 141 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: MK42 IDV, LPV, Unknown 141 I54M, I82F I89V V10I, K45R, V71I K7N, D17G, D40N, N41D 
  clone: MK43 IDV, LPV, Unknown 141 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: MK44 IDV, LPV, Unknown 141 I54M, I82F V33I, I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: MK45 IDV, LPV, Unknown 141 I54M, I82F I89V V10I, T43S, V71I K7N, D17G, D40N, N41D 
  clone: MK46 IDV, LPV, Unknown 141 I54M, I82F I89V V10I, A34T, T43S, K69*, V71I, F85L K7N, D17G, D40N, N41D, N68K, S96T 
  clone: PL24 IDV, LPV, Unknown 141 I54M, I82F I89V W6*, V10I, T43S, V71I K7N, D17G, G35E, G39R, D40N, N41D, G51E, G52R 
  13RT065 IDV, LPV, Unknown 141 I50V, I54M, I82F I89V V10I, I64V, V71I, F85L K7N, D17G, V20A, D40N, N41D, S96T 
  13RT066
Consensus 
IDV, LPV, Unknown 141 I50V, I54M, I82F I89V V10I, I64V, V71I, F85L K7N, D17G, D40N, N41D, S96T 
  clone: JS35 IDV, LPV, Unknown 141 I50V, I54M, I82F I89V V10I, I64V, V71I, T74A, F85L K7N, D17G, D40N, N41D, S96T 
  clone: JS36 IDV, LPV, Unknown 141 I50V, I54M, I82F I89V V10I, I64V, V71I, F85L, S96A K7N, D17G, D40N, N41D 
  clone: JS42 IDV, LPV, Unknown 141 I50V, I54M, I82F I89V V10I, I64V, V71I, F85L K7N, D17G, D40N, N41D, S96T 
  clone: JS43 IDV, LPV, Unknown 141 I50V, I54M, I82F I89V V10I, I64V, V71I, F85L K7N, D17G, D40N, N41D, S96T 
  clone: JS44 IDV, LPV, Unknown 141 I50V, I54M, I82F I89V V10I, I64V, V71I, F85L K7N, D17G, D40N, N41D, S96T 
  clone: JS45 IDV, LPV, Unknown 141 I50V, I54M, I82F I89V V10I, I64V, V71I, F85L K7N, D17G, D40N, N41D, S96T 
  clone: JS46 IDV, LPV, Unknown 141 I50V, I54M, I82F I89V V10I, I64V, V71I, F85L K7N, D17G, D40N, N41D, S96T 
H2A021 13RT067
Consensus 
IDV 51   G39X, T43S G35GR, D40DN, N41ND, R70K, R72RG 
  clone: 4170 IDV 51   G39X, T43S D40N, N41D, R70K, R72G 
  clone: 4171 IDV 51   T43S G35R, R70K 
  13RT068
Consensus 
IDV 87   T43S D17G, R70K 
  clone: 4314 IDV 87   T43S D17G, R70K 
  clone: 4315 IDV 87   T43S D17G, D40N, N41D, R70K 
  clone: 4316 IDV 87   E37K, T43S D17G, D40S, N41D, R70K 
  clone: 4317 IDV 87   T43S R70K 
  clone: 4318 IDV 87   T43S, P44X R70K 
  13RT069
Consensus 
IDV 110 I82IF  T43S D17G, D40S, V62VA, K65E, R70K, L99LF 
  clone: 4333 IDV 110   T43S D17G, D40S, V62A, K65E, R70K, L99F 
  clone: 4334 IDV 110 I82F  T43S D17G, D40S, K65E, R70K 
  13RT070
Consensus 
IDV 127   E37EK, T43S D17G, D40S, N41ND, R70K 
  clone: 4336 IDV 127   T43S D17G, R70K 
  clone: 4337 IDV 127   T43S D17G, R70K 
  clone: 4339 IDV 127   E37K, T43S D17G, D40S, N41D, R70K 
  clone: 4340 IDV 127   E37K, T43S D17G, D40S, N41D, R70K 
  clone: 4341 IDV 127   E37K, T43S D17G, D40S, N41D, R70K 
  clone: 4342 IDV 127   T43S D17G, D40S, V62A, K65E, R70K, L99F 
  clone: 4343 IDV 127   T43S D17G, D40S, V62A, K65E, R70K, L99F 
  clone: 4344 IDV 127   E37K, T43S D17G, D40S, N41D, R70K 
  13RT071
Consensus 
IDV 145 I82IF  T43S D17G, D40S, K60KR, V62VA, K65E, R70K, L99LF 
  clone: MK28 IDV 145 I82F  T43S D17G, D40S, K60R, K65E, R70K 
  clone: MK54 IDV 145   T43S D17G, D40S, V62A, K65E, R70K, L99F 
  13RT072
Consensus 
IDV 161 I82F  T43S D17G, D40S, K60KR, K65E, R70K, R72RG, L99F 
  clone: MK78 IDV 161 I82F  T43S D17G, D40S, K60R, K65E, R70K, L99F 
  clone: MK79 IDV 161 I82F  T43S D17G, D40S, K65E, R70K, R72G, L99F 
  13RT073 IDV, Unknown 203 V47A, I82F I89V V10I, T43S D17G, D40S, K65E, R70K 
H2A022 13RT074
Consensus 
IDV 83   T43S D40S, R70K 
  clone: 4281 IDV 83   T43S D40S, R70K 
  clone: 4282 IDV 83   T43S D40S, R70K 
  13RT075 IDV 101   T43S D40S, R70K 
  13RT076 IDV 156   T43S D40N, R70K 
H2A024 13RT077
Consensus 
None    V20I, T43S, T91A Y14L, D17G, D40N 
  clone: 4198 None    V20I, T43S, T91A Y14L, D17G, D40N 
  clone: 4199 None    V20I, A34V, T43S, T91A Y14L, D17G, D40N 
  clone: 65 None    E21D, T43S, T91A Y14L, D17G, G39R, D40S, G51R 
  13RT078
Consensus 
IDV 18   V20VI, E21ED, T43S, T91A Y14L, D17G, D40S, N88NH, L93L* 
  clone: 4278 IDV 18   E21D, T43S, T91A Y14L, D17G, D40S 
  clone: 4279 IDV 18   V20I, T43S, T91A, L93* Y14L, D17G, D40S, N88H 
  13RT079
Consensus 
IDV 38   V20VI, E21ED, T43S, T91A Y14H, D17G, D40SN 
  clone: 150 IDV 38   E21D, T43S, T91A Y14H, D17G, D40N 
  clone: 151 IDV 38   V20I, T43S, T91A Y14H, D17G, D40S 
  13RT080
Consensus 
IDV 78   E21D, T43S Y14L, D17G, D40S, L99F 
  clone: MK29 IDV 78   E21D, T43S Y14L, D17G, D40S, L99F 
  clone: MK30 IDV 78   E21D, T43S Y14L, D17G, D40S, L99F 
  clone: MK31 IDV 78   E21D, T43S Y14L, D17G, D40S, L99F 
  clone: MK32 IDV 78   E21D, T43S Y14L, D17G, D40S, L99F 
  clone: MK33 IDV 78   E21D, T43S, L99S Y14L, D17G, D40S 
  clone: MK55 IDV 78   T43S, T91A Y14H, D17G, D40N 
  clone: MK56 IDV 78   W6*, E21D, T43S, V71I, T91A Y14L, D17G, G27E, G39R, D40S, I46M 
  13RT081 IDV 98   T43S, T91A Y14L, D17G, D40S 
  13RT082
Consensus 
IDV 117   E21ED, T43S, T91TA Y14L, D17G, D40S, L99LF 
  clone: MK72 IDV 117 I54M  E21D, T43S Y14L, D17G, D40S, K45E, L99F 
  clone: MK73 IDV 117   T43S, T91A Y14L, D17G, D40S 
  clone: MK76 IDV 117   E21D, T43S, I89M Y14L, D17G, D40S, L99F 
  clone: MK77 IDV 117   W6*, V20I, T43S, T91A Y14H, D17S, G39R, D40N, G51R, G52R, R70K 
  13RT083 IDV, Unknown 130 I54M  W6*, E21D, T43S, V71I Y14L, D17G, D40S, L99F 
H2A025 13RT084
Consensus 
Unknown, IDV 24  I89V T43S D17G, D40S, K60R, E63K, K65E, R70K 
  clone: MK1 Unknown, IDV 24  I89V T43S D17G, D40S, K60R, E63K, K65E, R70K 
  clone: MK2 Unknown, IDV 24  I89V T43S D17G, D40S, K60R, E63K, K65E, R70K 
  clone: MK3 Unknown, IDV 24   T43S D17G, D40S, K60R, K65E, R70K 
  13RT085
Consensus 
Unknown, IDV 41   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 153 Unknown, IDV 41   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 154 Unknown, IDV 41   T43S D17G, G35R, D40S, K60R, K65E, R70K 
  clone: 155 Unknown, IDV 41   T43S D17G, D40S, K60R, K65E, R70K 
  13RT086 Unknown, IDV 56   T43S D17G, D40S, K60R, K65E, R70K 
  13RT087
Consensus 
Unknown, IDV 85  I89IV T43S D17G, D40S, K60R, K65E, R70K 
  clone: MK47 Unknown, IDV 85   T43S D17G, D40S, K60R, K65E, R70K 
  clone: MK48 Unknown, IDV 85  I89V T43S, F85L D17G, D40S, K60R, K65E, R70K 
  clone: MK57 Unknown, IDV 85  I89V T43S D17G, G27R, G39R, D40S, K60R, E63K, K65E, R70K, I75V 
  clone: MK58 Unknown, IDV 85   T43S D17G, D40S, K60R, K65E, R70K 
H2A026 13RT088 IDV 67  I89V E21K, T43S Y14H, D17G, D40C, K65E, N68G 
  13RT089 IDV 97  I89V T43S Y14H, D17G, D40C, N41D, I46M, K65E, N68G 
  13RT090 IDV, Unknown 115  I89V T43S Y14H, D17G, D40C, I46M, K65E, N68G 
H2A030 13RT091 IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K 
  13RT092
Consensus 
IDV, Unknown 52   T43S D17G, P19A, A28AV, D40S, N41D, R70K 
  clone: AL22 IDV, Unknown 52   T43S D17G, P19A, A28V, D40S, N41D, R70K 
  clone: AL23 IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K 
H2A031 13RT093
Consensus 
Unknown    T43S D17DG, D40DN, R70TK 
  clone: 4240 Unknown    T43S, R70T D17G, D40N 
  clone: 4241 Unknown    T43S R70K 
H2A033 13RT094
Consensus 
IDV, Unknown 71   T43S Y14H, D17G, D40S, N41D 
  clone: PL27 IDV, Unknown 71   T43S Y14H, D17G, D40S, N41D 
  clone: PL28 IDV, Unknown 71   T43S Y14H, D17G, D40S, N41D 
  13RT095 IDV, Unknown 71   G39E, T43N, R72K R8G, Y14H, D17G, D40N, N41D, G51R, R70K 
H2A034 13RT096 IDV 83   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  13RT097 IDV 118   V20I, T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  13RT098
Consensus 
IDV 153   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  clone: MK50 IDV 153   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  clone: MK51 IDV 153   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  clone: MK53 IDV 153   T43S, V71I, R72K, N98S Y14H, D17G, D40S, E63K, K65E, T77V 
  13RT099 IDV, Unknown 159   T43S, V71I, R72K, A92T Y14H, D17G, D40S, E63K, K65E, T77V 
H2A037 13RT100
Consensus 
None    E37D, T43S, T91A Y14H, D17G, D40S, R70K 
  clone: MK4 None    E37D, T43S, T91A Y14H, D17G, D40S, V62I, R70K 
  clone: MK5 None  I54V  E37D, T43S, T91A Y14H, D17G, D40S, R70K 
  clone: MK6 None    E37D, T43S, T91A Y14H, D17G, D40S, N41D 
  clone: MK7 None    E37D, T43S, T91A Y14H, D17G, D40S, R70K 
  clone: MK8 None    E37D, T43S, T91A Y14H, D17G, D40S, N41D 
  13RT101
Consensus 
None    E37D, T43S Y14H, D17G, D40S, V62A 
  clone: 4305 None    E37D, T43S Y14H, D17G, D40S, V62A 
  clone: 4306 None    E37D, T43S Y14H, D17G, D40S, V62A 
  clone: 4307 None    E37D, T43S Y14H, D17G, D40S, V62A 
  13RT102
Consensus 
None  I54M, I82F  E37D, T43S, V71I Y14H, D17G, D40S 
  clone: PL10 None  I82F I89V E37D, T43S Y14H, D17G, D40S 
  clone: PL11 None  I54M, I82F  E37D, T43S, V71I Y14H, D17G, D40S 
  clone: PL12 None  I82F  E37D, T43S, V71I Y14H, D17G, D40S 
  clone: PL13 None  I54M, I82F  E37D, T43S, V71I Y14H, D17G, D40S 
  clone: PL9 None  I54M, I82F  E37D, T43S, V71I Y14H, D17G, D40S 
  13RT103 IDV 12 I54M, I82F  E37D, T43S, V71I Y14H, D17G, D40S, R70K 
  13RT104 IDV, LPV 48 I54M, I82F I89V V10I, E37D, T43S, V71I Y14H, D17G, D40S 
  13RT105 IDV, LPV, Unknown 52 I54M, I82F  V10I, A34T, E37D, T43S, V71I, F85L, T91TA, A92AT, M95MV D17G, D40S, A73G 
H2A052 13RT106 IDV 46 I54M, L90M I89V E21K, E37D, T43S, V71I, F85L D17G, D40S, K65E, R70K 
  13RT107
Consensus 
IDV, LPV 64 I54M, L90M I89V E21K, E37D, T43S, T56TA, N61D, V71I, F85L D17G, D40S, K65E, R70K 
  clone: AL28 IDV, LPV 64 I54M, L90M I89V E21K, E37D, T43S, N61D, V71I, F85L D17G, D40S, K65E, R70K 
  clone: AL29 IDV, LPV 64 I54M, L90M I89V E21K, E37D, T43S, T56A, N61D, V71I, F85L D17G, D40S, K65E, R70K 
  13RT108 IDV, LPV 123 V47A, L90M A73AG, I89V V10VI, E37D, T43S, V71I, F85L D17G, D40C, V62VAIT, N68G, R70K, L99F 
  13RT109 IDV, LPV 148 V47A, L90M V33VI, I89V E37D, T43S, V71I, F85L D17G, D40C, N68G, R70K, A73G, L99F 
  13RT110 IDV, LPV 189 V47A, L90M V33I, I89V E37D, T43S, V71I, F85L D17G, D40C, N68G, R70K, A73G, L99F 
H2A057 13RT111 None   I89V T43S Y14H, D17G, D40C, K65E, N68G