Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Raugi (2013)
Title Complex patterns of protease inhibitor resistance among antiretroviral treatment-experienced HIV-2 patients from Senegal: implications for second-line therapy.
Citation Antimicrob Agents Chemother
SelectedGene PR
SelectedSpecies HIV2
SelectedType Clinical
NumIsolates 154
NumPts 43
Host Human

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 154 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
H2A002 13RT005 IDV 27  N83D T12L, V20I, E65K, V71I, T77I N40S, T56V, V62A, N68G, L99F 
  13RT006 IDV 37  N83D T12L, V20I, E65K, V71I, T77I Y14H, N40S, T56V, V62A, N68G, L99F 
H2A003 13RT007 IDV I82F  E65K P19A, N40S, G51R, L99F 
H2A004 13RT015 IDV 35  S43T, I46V, A73T A34R, E65K, K70R, F85L, I89T N40E, N41D, L99F 
H2A005 13RT016 IDV 76   G17E, E21D, K70T N40S, N41D, E65R 
  13RT017
Consensus 
IDV 95   G17E, E21ED, N41X, S43X, E65X, K70KT N40S 
  clone: 133 IDV 95  S43T G17E, E65K N40S, N41D 
  clone: 134 IDV 95   G17E, E21D, K70T N40S, N41D, E65R 
  clone: 140 IDV 95   G17E, E65K, K70T N40S 
H2A006 13RT018 Unknown, IDV 15   I36V, K70R Y14L, N40S, D79E 
  13RT019 Unknown, IDV 32   I36V, K70R Y14L, N40S, D79E 
  13RT020
Consensus 
Unknown, IDV 54   V10X, I15IV, I36X, N40X, E65X, K70X, T74TA, D79X Y14L 
  clone: 135 Unknown, IDV 54   I36V, E65K, K70T Y14L, N40S 
  clone: 136 Unknown, IDV 54   I36V, K70R, T74A Y14L, N40S, D79E 
  clone: 137 Unknown, IDV 54   I36V, E65K, K70T Y14L, N40S, D79E 
  clone: 138 Unknown, IDV 54   V10I, I15V, I36V, E65K, K70T Y14L, N40S 
  clone: 139 Unknown, IDV 54   E65Q, K70R Y14L 
  13RT021
Consensus 
Unknown, IDV 94   I36X, V62X, E65EK, K70X, D79X Y14L, N40S 
  clone: MK21 Unknown, IDV 94   E65K, K70T Y14L, N40S, V62A 
  clone: MK22 Unknown, IDV 94   E65K, K70T Y14L, N40S, V62A 
  clone: MK23 Unknown, IDV 94   E65K, K70T Y14L, N40S, V62A 
  clone: PL26 Unknown, IDV 94   I36V, K70R Y14L, N40S, D79E 
  clone: PL32 Unknown, IDV 94   E65K, K70R Y14L, N40S, D79E 
  clone: PL33 Unknown, IDV 94   I36V, K70R Y14L, N40S, D79E 
  clone: PL34 Unknown, IDV 94   I36V, K70R Y14L, N40S, D79E 
  13RT022
Consensus 
Unknown, IDV 94   E65K, K70R Y14L, N40S, D79E 
  clone: JS24 Unknown, IDV 94   E65K, K70R Y14L, N40S, D79E 
  clone: JS25 Unknown, IDV 94   E65K, K70R Y14L, N40S, D79E 
  13RT023 Unknown, IDV 94   I36V, E65K, K70T Y14L, N40S 
H2A007 13RT024 IDV, LPV 111   K70R E16G, N41D 
  13RT025
Consensus 
IDV, LPV 116   I15IV, K70KR E16G, N40S, N41D 
  clone: MK13 IDV, LPV 116    E16G, N40S, N41D 
  clone: MK14 IDV, LPV 116   K70R E16G, N40S, N41D 
  clone: MK15 IDV, LPV 116   I15V, K70R E16G, N40S, N41D 
  clone: MK16 IDV, LPV 116   K70R E16G, N40S, N41D 
  13RT026
Consensus 
IDV, LPV 133   N41X, V62X, K70R, M95X E16EG, N40S, L99LF 
  clone: MK26 IDV, LPV 133   K70R E16G, N40S, N41D, L99F 
  clone: MK27 IDV, LPV 133   K70R E16G, N40S, N41D, L99F 
  clone: MK34 IDV, LPV 133   K70R E16G, N40S, N41D, L99F 
  clone: PL19 IDV, LPV 133   K70R E16G, N40S, M95T 
  clone: PL20 IDV, LPV 133   K70R N40S, N41D, V62A, L99F 
  13RT027
Consensus 
IDV, LPV, Unknown 148 I54M  E21K, N41X, K70R, V71I E16G, N40S, L99F 
  clone: MK67 IDV, LPV, Unknown 148 I54M  E21K, K70R, V71I E16G, N40S, N41D, L99F 
  clone: MK80 IDV, LPV, Unknown 148 I54M  E21K, K70R, V71I E16G, N40S, L99F 
  13RT028
Consensus 
IDV, LPV, Unknown 148 I54IM  V10X, G39X, K70R, V71X, F85X W6W*, E16EG, E21ER, G27GE, N40S, N41D, L99LF 
  clone: MK68 IDV, LPV, Unknown 148   K70R, V71I E16G, N40S, N41D, L99F 
  clone: MK81 IDV, LPV, Unknown 148 I54M  W6*, K70R, V71I, F85L V10E, E21R, G27E, G39R, N40S, N41D, L99F 
  clone: MK82 IDV, LPV, Unknown 148 I54M  K70R E16G, N40S, N41D 
  13RT029
Consensus 
IDV, LPV, Unknown 148 I50IV, I54M, I84IV I89V K7R, E21X, A28X, V33X, I64IV, K70R, V71I, F85L V10E, N40S, G94GD, L99F 
  clone: JS33 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, E21K, A28X, I64V, K70R, V71I, F85L V10E, N40S, L99F 
  clone: JS34 IDV, LPV, Unknown 148 I54M, I84V I89V K7R, E21K, K70R, V71I, F85L V10E, N40S, L99F 
  clone: JS37 IDV, LPV, Unknown 148 I50V, I54M V33I, I89V K7R, E21K, I64V, K70R, V71I, F85L V10E, N40S, L99F 
  clone: JS38 IDV, LPV, Unknown 148 I50V, I54M V33I, I89V K7R, E21K, I64V, K70R, V71I, F85L V10E, N40S, L99F 
  clone: JS39 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, I64V, K70R, V71I, F85L V10E, E21R, N40S, L99F 
  clone: JS40 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, I64V, K70R, V71I, F85L V10E, E21R, N40S, G94D, L99F 
  clone: JS41 IDV, LPV, Unknown 148 I54M, I84V I89V K7R, K70R, V71I, F85L V10E, E21R, N40S, L99F 
  13RT030 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, T12I, E21K, E65K, K70R, V71I, F85L, M95MV V10E, S31T, N40S, N41D, T56V, V62I, I75V, L99F 
  13RT031 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, T12I, E21K, E65K, K70R, V71I, F85L, M95V V10E, V22M, S31T, N40S, N41D, T56V, I75V, L99F 
  13RT032 IDV, LPV, Unknown 148 I50V, I54M I89V K7R, T12I, E21K, E65K, K70R, V71I, F85L V10E, V22M, S31T, N40S, N41D, T56V, I75V, L99F 
H2A009 13RT033
Consensus 
IDV 43   S4P, K7E, G39X, E65K, K70R, T91A, A92T N40S, N68G 
  clone: 122 IDV 43   S4P, K7E, E65K, K70R, T91A, A92T N40S, N68G 
  clone: 4147 IDV 43   S4P, K7E, E65K, K70R, T91A, A92T G39R, N40S, N68G 
  13RT034 IDV, LPV 87   S4P, K7E, E65K, K70R, T91A, A92T N40S, G52R, V62I, N68G 
  13RT035 IDV, LPV 162   S4P, K7E, E65K, K70R, T91A, A92T N40S, N68G 
  13RT036
Consensus 
IDV, LPV 179   S4P, K7E, E65K, K70R, T91A, A92T N40S, N68G 
  clone: MK60 IDV, LPV 179   S4P, K7E, E65K, K70R, T91A, A92T N40S, N68G 
  clone: MK61 IDV, LPV 179   S4P, K7E, E65K, K70R, T91A, A92T N40S, N68G 
  13RT037 IDV, LPV 197   S4P, K7E, E65K, K70R, T91A, A92T V62I, N68G 
H2A010 13RT038
Consensus 
Unknown, IDV 34   V10VI, I15IV, E65EK, F85X R8RK, N41D 
  clone: 4208 Unknown, IDV 34   V10I, I15V, E65K N41D 
  clone: 4290 Unknown, IDV 34   I15V, E65K N41D 
  clone: 4291 Unknown, IDV 34    N41D 
  clone: 4292 Unknown, IDV 34   E65K, F85L N41D 
  clone: 4293 Unknown, IDV 34   I15V, E65K R8K, N41D 
  clone: 4295 Unknown, IDV 34   E65K, F85L N41D 
  13RT039
Consensus 
Unknown, IDV 51 I82IF, L90LM  I15IV, E65K, I89X N41D, L99LF 
  clone: 145 Unknown, IDV 51   E65K, I89M N41D 
  clone: 146 Unknown, IDV 51   E65K N41D 
  clone: 147 Unknown, IDV 51 L90M  E65K N41D 
  clone: 148 Unknown, IDV 51 L90M  E65K N41D 
  clone: 149 Unknown, IDV 51   I15V, E65K N41D 
  clone: 158 Unknown, IDV 51   E65K, I89M N41D 
  clone: 159 Unknown, IDV 51 L90M  E65K N41D, L99F 
  clone: 160 Unknown, IDV 51   E65K N41D 
  clone: 161 Unknown, IDV 51   E65K, I89M N41D, L99F 
  clone: 162 Unknown, IDV 51 I82F I89V E65K N41D 
  13RT040 Unknown, IDV 59 I82F I89V E65K N41D 
  13RT041
Consensus 
Unknown, IDV 67 I82F I89V E65K N41D 
  clone: MK17 Unknown, IDV 67 I82F I89V E65K N41D 
  clone: MK24 Unknown, IDV 67 I82F I89V E65K N41D 
  13RT042
Consensus 
Unknown, IDV 102 L90LM  L5LP, V10VI, E65K, I82X, F85X, I89X N41D, T77TA, L99LF 
  clone: MK35 Unknown, IDV 102 L90M I89V E65K, F85L N41D, L99F 
  clone: MK36 Unknown, IDV 102 I82F I89V E65K N41D 
  clone: MK37 Unknown, IDV 102 I82F I89V V10I, E65K N41D 
  clone: MK38 Unknown, IDV 102 L90M I89V E65K, F85L N41D, T77A, L99F 
  clone: PL35 Unknown, IDV 102 L90M  E65K N41D 
  clone: PL36 Unknown, IDV 102 L90M  L5P, E65K N41D 
  13RT043 Unknown, IDV 113 L90M I89V E65K, F85L N41D, L99F 
  13RT044 Unknown, IDV 113  I46V E65K N40S, N41D, K60R 
  13RT045 Unknown, IDV 113 V47A, L90M V33I, I89V E65K, V71I, F85L N41D, L99F 
H2A014 13RT046 Unknown, IDV  N88D  N40S 
  13RT047
Consensus 
Unknown, IDV 36  A73AV  G35GE, N40S, K60R, M95MT 
  clone: 4254 Unknown, IDV 36    N40S, K60R, M95T 
  clone: 4297 Unknown, IDV 36    N40S, K60R 
  clone: 4298 Unknown, IDV 36   A73V N40S, K60R 
  clone: 4299 Unknown, IDV 36    G35E, N40S, K60R 
  clone: 4300 Unknown, IDV 36    N40S, K60R 
  clone: 4301 Unknown, IDV 36    N40S, K60R 
  clone: 4302 Unknown, IDV 36    N40S, K60R 
  13RT048
Consensus 
Unknown, IDV 54    G35GE, N40S, K60R 
  clone: 124 Unknown, IDV 54    N40S, K60R 
  clone: 164 Unknown, IDV 54    N40S, K60R 
  clone: 165 Unknown, IDV 54    G35E, N40S, K60R 
  clone: 166 Unknown, IDV 54    N40S, K60R 
  clone: 4319 Unknown, IDV 54    N40S, K60R 
  clone: 4320 Unknown, IDV 54    N40S, K60R 
  13RT049
Consensus 
Unknown, IDV 100   K7KR, V20X, I50X, G51X, G52X N40S, K60R 
  clone: MK39 Unknown, IDV 100   K7R N40S, K60R 
  clone: MK40 Unknown, IDV 100   I50X, G51X, G52X N40S, K60R 
  clone: MK41 Unknown, IDV 100    N40S, K60R 
  clone: MK49 Unknown, IDV 100    N40S, K60R 
  clone: PL21 Unknown, IDV 100    V20A, N40S, K60R 
  clone: PL22 Unknown, IDV 100    V20A, N40S, K60R 
  clone: PL23 Unknown, IDV 100    N40S, K60R 
  13RT050 Unknown, IDV 134    N40S, K60R 
  13RT051
Consensus 
Unknown, IDV 152    N40S, K60R 
  clone: AL19 Unknown, IDV 152    N40S, K60R 
  clone: AL20 Unknown, IDV 152    N40S, K60R 
H2A015 13RT052 IDV 49 I54M  K7R, E65K, V71I, A92T Y14H, N40S, N41D 
  13RT053 IDV 53 I54M  K7R, E65K, V71I, A92T Y14H, N40S, N41D 
  13RT054
Consensus 
IDV 84 I54M, I82F  K7R, E65K, V71I Y14H, N40S, N41D 
  clone: 4303 IDV 84 I54M, I82F  K7R, E65K, V71I Y14H, N40S, N41D 
  clone: 4304 IDV 84 I54M, I82F  K7R, E65K, V71I Y14H, N40S, N41D 
  13RT055
Consensus 
IDV 120   E65K, K70KR Y14H, N40S, N41D 
  clone: 4321 IDV 120   E65K, K70R Y14H, N40S, N41D 
  clone: 4322 IDV 120   E65K, K70R Y14H, N40S, N41D 
  clone: 4323 IDV 120   E65K Y14H, N40S, N41D 
  clone: 4324 IDV 120   E65K, K70R Y14H, N40S, N41D 
  clone: 4325 IDV 120   E65K, K70R Y14H, N40S, N41D 
  clone: 4326 IDV 120   E65K Y14H, N40S, N41D 
  13RT056
Consensus 
IDV 137 I54M, I82F  K7R, V10I, E65K, V71I Y14H, N40S, N41D 
  clone: 4338 IDV 137 I54M, I82F  K7R, V10I, E65K, V71I Y14H, N40S, N41D 
  clone: 4346 IDV 137 I54M, I82F  K7R, V10I, E65K, V71I Y14H, N40S, N41D 
  clone: 4347 IDV 137 I54M, I82F  K7R, V10I, E65K, V71I Y14H, N40S, N41D 
  clone: 4348 IDV 137 I54M, I82F  K7R, V10I, E65K, V71I Y14H, N40S, N41D 
  clone: 4349 IDV 137 I54M, I82F  K7R, V10I, E65K, V71I Y14H, N40S, N41D 
H2A019 13RT057
Consensus 
IDV, Unknown 52   V10X, Y14X, N61X, K70R, I82X, I89X N40S, E65R 
  clone: 4247 IDV, Unknown 52 I82F I89V V10I, K70R N40S, E65R 
  clone: 4258 IDV, Unknown 52   N61D, K70R Y14H, N40S, E65R 
  13RT058 IDV, Unknown 52 I82F I89V V10I, K70R K7N, N40S, E65R 
H2A020 13RT059
Consensus 
IDV 55 I50IV, I54M I89V E65K, K70R, V71X, F85L K7N, N41D 
  clone: 4206 IDV 55 I54M I89V E65K, K70R, F85L K7N, N41D 
  clone: 4207 IDV 55 I50V, I54M I89V E65K, K70R, F85L K7N, N41D 
  clone: 4237 IDV 55 I54M I89V E65K, K70R, V71I, F85L K7N, N41D 
  13RT060 IDV 64 I54M G48R, I89V E37K, E65K, K70R, V71I, F85L K7N, G27E, G39R, N41D, G49R, G51R, G52R 
  13RT061
Consensus 
IDV 91 I54M, I82IF I89V V10X, E65K, K70R, V71I, F85FL K7N, P9PS, I36IM, N41D 
  clone: 4259 IDV 91 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, P9S, N41D 
  clone: 4260 IDV 91 I54M I89V E65K, K70R, V71I, F85L K7N, I36M, N41D 
  clone: 4309 IDV 91 I54M, I82F I89V E65K, K70R, V71I K7N, N41D 
  clone: 4310 IDV 91 I54M, I82F I89V E65K, K70R, V71I K7N, N41D 
  clone: 4311 IDV 91 I54M, I82F I89V E65K, K70R, V71I K7N, N41D 
  clone: 4312 IDV 91 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: 4313 IDV 91 I54M, I82F I89V E65K, K70R, V71I K7N, N41D 
  13RT062
Consensus 
IDV 108 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: 125 IDV 108 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: 4335 IDV 108 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  13RT063
Consensus 
IDV 125 I54M, I82F I89V V10I, E65K, K70KR, V71I K7N, N41D 
  clone: 4350 IDV 125 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: 4351 IDV 125 I54M, I82F I89V V10I, E65K, V71I K7N, N41D 
  clone: 4352 IDV 125 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: 4353 IDV 125 I54M, I82F I89V V10I, E65K, V71I K7N, N41D 
  clone: 4354 IDV 125 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: 4355 IDV 125 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: 4356 IDV 125 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  13RT064
Consensus 
IDV, LPV, Unknown 141 I54M, I82F V33VI, S43ST, I89V V10I, A34AT, K45KR, E65K, K70R, V71I, F85FL W6W*, K7N, G35GE, G39GR, N41D, G51GE, G52GR, N68NK, K69K*, S96ST 
  clone: MK42 IDV, LPV, Unknown 141 I54M, I82F S43T, I89V V10I, K45R, E65K, K70R, V71I K7N, N41D 
  clone: MK43 IDV, LPV, Unknown 141 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: MK44 IDV, LPV, Unknown 141 I54M, I82F V33I, I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: MK45 IDV, LPV, Unknown 141 I54M, I82F I89V V10I, E65K, K70R, V71I K7N, N41D 
  clone: MK46 IDV, LPV, Unknown 141 I54M, I82F I89V V10I, A34T, E65K, K69*, K70R, V71I, F85L K7N, N41D, N68K, S96T 
  clone: PL24 IDV, LPV, Unknown 141 I54M, I82F I89V W6*, V10I, E65K, K70R, V71I K7N, G35E, G39R, N41D, G51E, G52R 
  13RT065 IDV, LPV, Unknown 141 I50V, I54M, I82F S43T, I89V V10I, I64V, E65K, K70R, V71I, F85L K7N, V20A, N41D, S96T 
  13RT066
Consensus 
IDV, LPV, Unknown 141 I50V, I54M, I82F S43T, I89V V10I, I64V, E65K, K70R, V71I, T74TA, F85L K7N, N41D, S96TA 
  clone: JS35 IDV, LPV, Unknown 141 I50V, I54M, I82F S43T, I89V V10I, I64V, E65K, K70R, V71I, T74A, F85L K7N, N41D, S96T 
  clone: JS36 IDV, LPV, Unknown 141 I50V, I54M, I82F S43T, I89V V10I, I64V, E65K, K70R, V71I, F85L, S96A K7N, N41D 
  clone: JS42 IDV, LPV, Unknown 141 I50V, I54M, I82F S43T, I89V V10I, I64V, E65K, K70R, V71I, F85L K7N, N41D, S96T 
  clone: JS43 IDV, LPV, Unknown 141 I50V, I54M, I82F S43T, I89V V10I, I64V, E65K, K70R, V71I, F85L K7N, N41D, S96T 
  clone: JS44 IDV, LPV, Unknown 141 I50V, I54M, I82F S43T, I89V V10I, I64V, E65K, K70R, V71I, F85L K7N, N41D, S96T 
  clone: JS45 IDV, LPV, Unknown 141 I50V, I54M, I82F S43T, I89V V10I, I64V, E65K, K70R, V71I, F85L K7N, N41D, S96T 
  clone: JS46 IDV, LPV, Unknown 141 I50V, I54M, I82F S43T, I89V V10I, I64V, E65K, K70R, V71I, F85L K7N, N41D, S96T 
H2A021 13RT067
Consensus 
IDV 51   G17D, G35X, G39X, N40X, N41X, E65K, R72X  
  clone: 4170 IDV 51   G17D, G39X, E65K N41D, R72G 
  clone: 4171 IDV 51   G17D, E65K G35R, N40D 
  13RT068
Consensus 
IDV 87   G17GD, E37X, N40X, N41X, I46X, E65K  
  clone: 4314 IDV 87   E65K N40D 
  clone: 4315 IDV 87   E65K N41D 
  clone: 4316 IDV 87   E37K, E65K N40S, N41D 
  clone: 4317 IDV 87   G17D, E65K N40D 
  clone: 4318 IDV 87   G17D, I46X, E65K N40D 
  13RT069
Consensus 
IDV 110   V62X, I82X N40S, L99LF 
  clone: 4333 IDV 110    N40S, V62A, L99F 
  clone: 4334 IDV 110 I82F   N40S 
  13RT070
Consensus 
IDV 127   E37X, N40X, N41X, V62X, E65EK L99LF 
  clone: 4336 IDV 127   E65K N40D 
  clone: 4337 IDV 127   E65K N40D 
  clone: 4339 IDV 127   E37K, E65K N40S, N41D 
  clone: 4340 IDV 127   E37K, E65K N40S, N41D 
  clone: 4341 IDV 127   E37K, E65K N40S, N41D 
  clone: 4342 IDV 127    N40S, V62A, L99F 
  clone: 4343 IDV 127    N40S, V62A, L99F 
  clone: 4344 IDV 127   E37K, E65K N40S, N41D 
  13RT071
Consensus 
IDV 145   K60X, V62X, I82X N40S, L99LF 
  clone: MK28 IDV 145 I82F   N40S, K60R 
  clone: MK54 IDV 145    N40S, V62A, L99F 
  13RT072
Consensus 
IDV 161 I82F  K60X, R72X N40S, L99F 
  clone: MK78 IDV 161 I82F   N40S, K60R, L99F 
  clone: MK79 IDV 161 I82F   N40S, R72G, L99F 
  13RT073 IDV, Unknown 203 V47A, I82F I89V V10I N40S 
H2A022 13RT074
Consensus 
IDV 83   G17D, E65K N40S 
  clone: 4281 IDV 83   G17D, E65K N40S 
  clone: 4282 IDV 83   G17D, E65K N40S 
  13RT075 IDV 101   G17D, E65K N40S 
  13RT076 IDV 156   G17D, E65K  
H2A024 13RT077
Consensus 
None    V20X, E21ED, A34X, G39X, N40X, E65K, K70R, T91A Y14L, G51GR 
  clone: 4198 None    V20I, E65K, K70R, T91A Y14L 
  clone: 4199 None    V20I, A34V, E65K, K70R, T91A Y14L 
  clone: 65 None    E21D, E65K, K70R, T91A Y14L, G39R, N40S, G51R 
  13RT078
Consensus 
IDV 18   V20X, E21ED, E65K, K70R, T91A, L93X Y14L, N40S, N88NH 
  clone: 4278 IDV 18   E21D, E65K, K70R, T91A Y14L, N40S 
  clone: 4279 IDV 18   V20I, E65K, K70R, T91A, L93* Y14L, N40S, N88H 
  13RT079
Consensus 
IDV 38   V20X, E21ED, N40X, E65K, K70R, T91A Y14H 
  clone: 150 IDV 38   E21D, E65K, K70R, T91A Y14H 
  clone: 151 IDV 38   V20I, E65K, K70R, T91A Y14H, N40S 
  13RT080
Consensus 
IDV 78 I46IM  E21ED, E65K, K70R, V71VI, T91TA W6W*, Y14LH, G27GE, G39GR, N40NS, L99LFS 
  clone: MK29 IDV 78   E21D, E65K, K70R Y14L, N40S, L99F 
  clone: MK30 IDV 78   E21D, E65K, K70R Y14L, N40S, L99F 
  clone: MK31 IDV 78   E21D, E65K, K70R Y14L, N40S, L99F 
  clone: MK32 IDV 78   E21D, E65K, K70R Y14L, N40S, L99F 
  clone: MK33 IDV 78   E21D, E65K, K70R, L99S Y14L, N40S 
  clone: MK55 IDV 78   E65K, K70R, T91A Y14H 
  clone: MK56 IDV 78   W6*, E21D, E65K, K70R, V71I, T91A Y14L, G27E, G39R, N40S, I46M 
  13RT081 IDV 98   E65K, K70R, T91A Y14L, N40S 
  13RT082
Consensus 
IDV 117 I54IM  Y14X, V20X, E21ED, G39X, N40X, E65K, K70KR, I89X, T91TA W6W*, G17GS, K45KE, G51GR, G52GR, L99LF 
  clone: MK72 IDV 117 I54M  E21D, E65K, K70R Y14L, N40S, K45E, L99F 
  clone: MK73 IDV 117   E65K, K70R, T91A Y14L, N40S 
  clone: MK76 IDV 117   E21D, E65K, K70R, I89M Y14L, N40S, L99F 
  clone: MK77 IDV 117   W6*, V20I, E65K, T91A Y14H, G17S, G39R, G51R, G52R 
  13RT083 IDV, Unknown 130 I54M  W6*, E21D, E65K, K70R, V71I Y14L, N40S, L99F 
H2A025 13RT084
Consensus 
Unknown, IDV 24   E63X, I89X N40S, K60R 
  clone: MK1 Unknown, IDV 24  I89V  N40S, K60R, E63K 
  clone: MK2 Unknown, IDV 24  I89V  N40S, K60R, E63K 
  clone: MK3 Unknown, IDV 24    N40S, K60R 
  13RT085
Consensus 
Unknown, IDV 41   G35X N40S, K60R 
  clone: 153 Unknown, IDV 41    N40S, K60R 
  clone: 154 Unknown, IDV 41    G35R, N40S, K60R 
  clone: 155 Unknown, IDV 41    N40S, K60R 
  13RT086 Unknown, IDV 56    N40S, K60R 
  13RT087
Consensus 
Unknown, IDV 85   G39X, E63X, F85X, I89X G27GR, N40S, K60R, I75IV 
  clone: MK47 Unknown, IDV 85    N40S, K60R 
  clone: MK48 Unknown, IDV 85  I89V F85L N40S, K60R 
  clone: MK57 Unknown, IDV 85  I89V  G27R, G39R, N40S, K60R, E63K, I75V 
  clone: MK58 Unknown, IDV 85    N40S, K60R 
H2A026 13RT088 IDV 67  I89V E21K, K70R Y14H, N40C, N68G 
  13RT089 IDV 97  I89V K70R Y14H, N40C, N41D, I46M, N68G 
  13RT090 IDV, Unknown 115  I89V K70R Y14H, N40C, I46M, N68G 
H2A030 13RT091 IDV, Unknown 52   E65K P19A, N40S, N41D 
  13RT092
Consensus 
IDV, Unknown 52   E65K P19A, A28AV, N40S, N41D 
  clone: AL22 IDV, Unknown 52   E65K P19A, A28V, N40S, N41D 
  clone: AL23 IDV, Unknown 52   E65K P19A, N40S, N41D 
H2A031 13RT093
Consensus 
Unknown    G17GD, N40X, E65K, K70KT  
  clone: 4240 Unknown    E65K, K70T  
  clone: 4241 Unknown    G17D, E65K N40D 
H2A033 13RT094
Consensus 
IDV, Unknown 71   E65K, K70R Y14H, N40S, N41D 
  clone: PL27 IDV, Unknown 71   E65K, K70R Y14H, N40S, N41D 
  clone: PL28 IDV, Unknown 71   E65K, K70R Y14H, N40S, N41D 
  13RT095 IDV, Unknown 71   G39E, S43N, E65K, R72K R8G, Y14H, N41D, G51R 
H2A034 13RT096 IDV 83   K70R, V71I, R72K Y14H, N40S, E63K, T77V 
  13RT097 IDV 118   V20I, K70R, V71I, R72K Y14H, N40S, E63K, T77V 
  13RT098
Consensus 
IDV 153   K70R, V71I, R72K, N98NS Y14H, N40S, E63K, T77V 
  clone: MK50 IDV 153   K70R, V71I, R72K Y14H, N40S, E63K, T77V 
  clone: MK51 IDV 153   K70R, V71I, R72K Y14H, N40S, E63K, T77V 
  clone: MK53 IDV 153   K70R, V71I, R72K, N98S Y14H, N40S, E63K, T77V 
  13RT099 IDV, Unknown 159   K70R, V71I, R72K, A92T Y14H, N40S, E63K, T77V 
H2A037 13RT100
Consensus 
None  I54IV  E37D, N41X, E65K, K70KR, T91A Y14H, N40S, V62VI 
  clone: MK4 None    E37D, E65K, T91A Y14H, N40S, V62I 
  clone: MK5 None  I54V  E37D, E65K, T91A Y14H, N40S 
  clone: MK6 None    E37D, E65K, K70R, T91A Y14H, N40S, N41D 
  clone: MK7 None    E37D, E65K, T91A Y14H, N40S 
  clone: MK8 None    E37D, E65K, K70R, T91A Y14H, N40S, N41D 
  13RT101
Consensus 
IDV 17   E37D, E65K, K70R Y14H, N40S, V62A 
  clone: 4305 IDV 17   E37D, E65K, K70R Y14H, N40S, V62A 
  clone: 4306 IDV 17   E37D, E65K, K70R Y14H, N40S, V62A 
  clone: 4307 IDV 17   E37D, E65K, K70R Y14H, N40S, V62A 
  13RT102
Consensus 
IDV 49 I54IM, I82F  E37D, E65K, K70R, V71X, I89X Y14H, N40S 
  clone: PL10 IDV 49 I82F I89V E37D, E65K, K70R Y14H, N40S 
  clone: PL11 IDV 49 I54M, I82F  E37D, E65K, K70R, V71I Y14H, N40S 
  clone: PL12 IDV 49 I82F  E37D, E65K, K70R, V71I Y14H, N40S 
  clone: PL13 IDV 49 I54M, I82F  E37D, E65K, K70R, V71I Y14H, N40S 
  clone: PL9 IDV 49 I54M, I82F  E37D, E65K, K70R, V71I Y14H, N40S 
  13RT103 IDV 72 I54M, I82F  E37D, E65K, V71I Y14H, N40S 
  13RT104 IDV, LPV 107 I54M, I82F I89V V10I, E37D, E65K, K70R, V71I Y14H, N40S 
  13RT105 IDV, LPV 240 I54M, I82F  V10I, A34T, E37D, E65K, K70R, V71I, F85L, T91TA, A92AT, M95MV N40S, A73G 
H2A052 13RT106 IDV 46 I54M, L90M I89V E21K, E37D, V71I, F85L N40S 
  13RT107
Consensus 
IDV, LPV 64 I54M, L90M I89V E21K, E37D, T56X, N61D, V71I, F85L N40S 
  clone: AL28 IDV, LPV 64 I54M, L90M I89V E21K, E37D, N61D, V71I, F85L N40S 
  clone: AL29 IDV, LPV 64 I54M, L90M I89V E21K, E37D, T56A, N61D, V71I, F85L N40S 
  13RT108 IDV, LPV 123 V47A, L90M A73AG, I89V V10VI, E37D, V62X, E65K, V71I, F85L N40C, N68G, L99F 
  13RT109 IDV, LPV 148 V47A, L90M V33VI, I89V E37D, E65K, V71I, F85L N40C, N68G, A73G, L99F 
  13RT110 IDV, LPV 189 V47A, L90M V33I, I89V E37D, E65K, V71I, F85L N40C, N68G, A73G, L99F 
H2A057 13RT111 None   I89V K70R Y14H, N40C, N68G