<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Gottlieb (2009)
Title Emergence of multiclass drug-resistance in HIV-2 in antiretroviral-treated individuals in Senegal: implications for HIV-2 treatment in resouce-limited West Africa.
Citation Clin Infect Dis
SelectedGene PR
SelectedSpecies HIV2
NumIsolates 67
NumPts 23
Host Human


Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
H2A001 PBR09001 IDV   T43N, T91A, A92T Y14H, D40N, N41D, R70K 
  PBR09002
Consensus 
IDV 16   T43S, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 41 IDV 16   T43N, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 4167 IDV 16   T43S, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 4168 IDV 16   T43N, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 4169 IDV 16   T43S, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 59 IDV 16   T12I, T43S, R72K, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  PBR09003
Consensus 
IDV 30   T43S, R72K, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 4163 IDV 30   T43S, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 4164 IDV 30   L5P, T43S, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 4209 IDV 30   T43S, R72K, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 4210 IDV 30   T43S, R72K, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
  clone: 4212 IDV 30   T43S, R72K, T91A, A92T Y14H, D17G, D40N, N41D, R70K 
H2A002 PBR09004
Consensus 
IDV 18  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 4135 IDV 18   T12L, V20I, T43S, V62T D17G, D40S, T56V, R70K, L99F 
  clone: 4136 IDV 18   T12L, V20I, T43S, V71I D17G, D40S, T56V, V62A, R70K, L99F 
  clone: 72 IDV 18  N83D T12L, V20I, T43S, V71I, T77I Y14H, D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 73 IDV 18  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 74 IDV 18  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 75 IDV 18  N83D T12L, V20I, T43S, V71I, T77I P9S, Y14H, D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 76 IDV 18  N83D T12L, V20I, T43S, V71I, T77I Y14H, D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  PBR09005
Consensus 
IDV 27  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 33 IDV 27   T12L, T43S D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 35 IDV 27  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 36 IDV 27  N83D T12L, V20I, T43S Y14H, D17G, D40S, T56V, V62A, N68G, R70K, T77V, L99F 
  clone: 37 IDV 27  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 4151 IDV 27  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 4152 IDV 27  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  PBR09006
Consensus 
IDV 37  N83ND T12L, V20VI, T43S, V71VI, T77TI D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 104 IDV 37  N83D T12L, V20I, T43S, V71I, T77I D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 4213 IDV 37  N83D T12L, V20I, T43S, V71I, T77I D17G, A34S, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 4216 IDV 37   T12L, T43S D17G, D40S, T56V, V62A, N68G, R70K, L99F 
  clone: 4217 IDV 37   T12L, T43S D17G, D40S, T56V, V62A, N68G, R70K, L99F 
H2A003 PBR09007
Consensus 
IDV   T43S D17G, P19A, D40S, R70K 
  clone: 4141 IDV   T43S D17G, P19A, D40S, R70K 
  clone: 4142 IDV   T43S D17G, P19A, D40S, R70K 
  PBR09008
Consensus 
IDV 18 I82IF  V10VI, T43S D17G, P19A, D40S, R70K, L99LF 
  clone: 4193 IDV 18 I82F  V10I, T43S D17G, P19A, D40S, R70K, L99F 
  clone: 62 IDV 18   T43S D17G, P19A, D40S, R70K 
  PBR9009
Consensus 
IDV 35   T43S D17G, P19A, D40S, R70K 
  clone: 4202 IDV 35  A73T T43S Y14H, D17G, D40S, R70K 
  clone: 4203 IDV 35 I82F  V10I, T43S D17G, P19A, D40S, R70K, G78D, L99F 
  clone: 4249 IDV 35   T43S D17G, P19A, D40S, R70K 
  PBR9010
Consensus 
IDV 52 I82F  V10I, T43S D17G, P19A, D40S, R70K, L99F 
  clone: 4271 IDV 52 I82F  V10I, T43S D17G, P19A, D40S, R70K, L99F 
  clone: 4272 IDV 52 I82F  V10I, T43S D17G, P19A, D40S, R70K, L99F 
H2A004 PBR9011
Consensus 
IDV 35  I46V, A73T A34K, F85L, I89T D17G, D40E, N41D, L99F 
  clone: 4150 IDV 35  I46V, A73T A34K, F85L, I89T D17G, D40E, N41D, L99F 
  clone: 77 IDV 35  I46V, A73T A34K, F85L, I89T D17G, D40E, N41D, L99F 
  clone: 78 IDV 35  I46V, A73T A34K, F85L, I89T D17G, D40E, N41D, L99F 
  clone: 79 IDV 35  I46V, A73T A34R, F85L, I89T D17G, D40E, N41D, L99F 
  clone: 81 IDV 35  I46V, A73T A34R, F85L, I89T D17G, D40E, N41D, L99F 
H2A005 PBR9012 IDV 32   D17E D40S, N41D, R70K 
  PBR9013
Consensus 
IDV 39   D17E, R70RT D40SN, N41D, K65KR 
  clone: 111 IDV 39   D17E, R70T D40S, N41D, K65R 
  clone: 42 IDV 39   D17E D40N, N41D 
  PBR9014
Consensus 
IDV 55   D17E D40S, N41D 
  clone: 4160 IDV 55   D17E, T43S D40N, N41D 
  clone: 4161 IDV 55   L5P, D17E, R70T D40S, N41D, K65R 
  clone: 4162 IDV 55   D17E D40S, N41D, R70K 
  clone: 4215 IDV 55   D17E D40S, N41D 
  clone: 4218 IDV 55   D17E D40S, N41D, K60R 
  clone: 4219 IDV 55   D17E D40S, N41D, R70K 
H2A006 PBR9015
Consensus 
Unknown    I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 4143 Unknown    T43S Y14L, D17G, D40S, D79E 
  clone: 4144 Unknown    I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 4189 Unknown    I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 55 Unknown    I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 56 Unknown    I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 57 Unknown    I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 58 Unknown    T43S F3S, Y14L, D17G, D40S, D79E 
  PBR9016
Consensus 
Unknown, IDV   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 4190 Unknown, IDV   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 4226 Unknown, IDV   I36V, T43S Y14L, D17G, D40S, D79E 
  clone: 4227 Unknown, IDV   I36V, T43S Y14L, D17G, D40N, K65E, D79E 
  clone: 4228 Unknown, IDV   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 4229 Unknown, IDV   I36V, T43S Y14L, D17G, D40S, T56I, K65E, D79E 
  clone: 60 Unknown, IDV   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  PBR9017
Consensus 
Unknown, IDV 15   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 31 Unknown, IDV 15   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  clone: 32 Unknown, IDV 15   T43S Y14L, D17G, D40S, K65E, D79E, G94D 
  clone: 97 Unknown, IDV 15   I36V, T43S Y14L, D17G, D40S, K65E, D79E 
  PBR9018 Unknown, IDV 32   T43S, N61D Y14L, D17G, D40S, D79E 
  PBR9019 Unknown, IDV 54   I36V, T43S, K69R Y14L, D17G, D40S, K65E, D79E 
H2A009 PBR9020 IDV 49   S4P, K7E, T43S, T91A, A92T D17G, D40S, N68G 
  PBR9021 IDV, LPV 87   S4P, K7E, T43S, T91A, A92T D17G, D40S, N68G 
H2A010 PBR9022
Consensus 
Unknown    I15V, T43S D17G, D40N, N41D, R70K 
  clone: 22 Unknown    I15V, T43S D17G, D40N, N41D, R70K 
  clone: 50 Unknown    I15V, T43S D17G, D40N, N41D, R70K 
  PBR9023
Consensus 
Unknown, IDV   I15V, T43S D17G, D40N, N41D, R70K 
  clone: 28 Unknown, IDV   I15V, T43S D17G, D40N, N41D, R70K 
  clone: 29 Unknown, IDV   I15V, T43S D17G, D40N, N41D, R70K 
  PBR9024
Consensus 
Unknown, IDV 17   T43S D17G, D40N, N41D, R70K 
  clone: 4165 Unknown, IDV 17   T43S D17G, D40N, N41D, R70K 
  clone: 4166 Unknown, IDV 17   T43S D17G, D40N, N41D, R70K 
  PBR9025
Consensus 
Unknown, IDV 38   T43S, F85FL D17G, D40N, N41D, R70K 
  clone: 4252 Unknown, IDV 38   T43S D17G, D40N, N41D, R70K 
  clone: 4253 Unknown, IDV 38   T43S, F85L D17G, D40N, N41D, R70K 
  PBR9026 Unknown, IDV 59 L90M  T43S, F85L D17G, D40N, N41D, R70K 
H2A014 PBR9027
Consensus 
Unknown, IDV   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 27 Unknown, IDV   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 52 Unknown, IDV   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 53 Unknown, IDV   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 54 Unknown, IDV   T43S D17G, D40S, K60R, K65E, R70K 
  PBR9028
Consensus 
Unknown, IDV   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4145 Unknown, IDV   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4146 Unknown, IDV   T43S D17G, D40S, K60R, K65E, R70K 
  PBR9029
Consensus 
Unknown, IDV 19   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 25 Unknown, IDV 19   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 26 Unknown, IDV 19   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4230 Unknown, IDV 19   T43S D17G, D40S, K60R, K65E, R70K 
  PBR9030 Unknown, IDV 36   T43S D17G, D40S, K60R, K65E, R70K 
H2A015 PBR9031 IDV 49 I54M  S4P, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  PBR9032
Consensus 
IDV 53 I54M  K7R, T43S, V71I, A92T Y14H, D17G, D40S, N41D, R70K 
  clone: 39 IDV 53 I54M  K7R, T43S, V71I, A92T Y14H, D17G, D40S, N41D, R70K 
  clone: 40 IDV 53 I54M  K7R, T43S, V71I, A92T Y14H, D17G, D40S, N41D, R70K 
  clone: 63 IDV 53 I54M  T43S, V71I K7G, Y14H, D17G, D40S, N41D, R70K 
  PBR9033
Consensus 
IDV 68 I54M  K7R, T43S, V71I Y14H, D17G, D40S, N41D 
  clone: 4158 IDV 68 I54M  K7R, T43S, V71I Y14H, D17G, D40S, N41D 
  clone: 4159 IDV 68 I54M  K7R, T43S, V71I, A92T Y14H, D17G, D40S, N41D 
  clone: 4246 IDV 68 I54M, I82F  K7R, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  PBR9034 IDV 79 I54M, I82F  K7R, V10I, T43S, V71I Y14H, D17G, D40S, N41D, R70K 
  PBR9035 IDV 84 I54M, I82F I32L T43S, V71I Y14H, D17G, D40S, N41D, R70K 
H2A017 PBR9036
Consensus 
Unknown    K7R, T12R, V71I, T91N Y14D, D17G, D40S, K65E, L67V, N68G, I75L, A92S, S96T, L99F 
  PBR9037 Unknown    K7R, T12R, V71I, T91N Y14D, D17G, D40S, K65E, L67V, N68G, I75L, A92S, S96T, L99F 
  PBR9036
clone: 4232 
Unknown    K7R, T12R, V71I, T91N Y14D, D17G, D40S, K65E, L67V, N68G, I75L, A92S, S96T, L99F 
  clone: 4233 Unknown    K7R, T12R, V71I, T91N Y14D, D17G, D40S, K65E, L67V, N68G, I75L, A92S, S96T, L99F 
H2A019 PBR9037
Consensus 
IDV, Unknown 52 I82F I89IV V10VI, T43S K7KN, D17G, D40S, K65R 
  clone: 30 IDV, Unknown 52 I82F  T43S K7N, D17G, D40S, K65R 
  clone: 4234 IDV, Unknown 52 I82F I89V V10I, T43S D17G, D40S, K65R 
  PBR9038
Consensus 
IDV, Unknown 52 I82F I89V V10I, T43S D17G, D40S, K65R 
  clone: 4148 IDV, Unknown 52 I82F  T43S K7N, D17G, D40S, K65R 
  clone: 4149 IDV, Unknown 52 I82F I89V V10I, T43S D17G, D40S, K65R 
  clone: 4257 IDV, Unknown 52 I82F I89V V10I, T43S D17G, D40S, K65R 
  PBR9039
Consensus 
IDV, Unknown 52 I82F I89V V10I, T43S D17G, D40S, K65R 
  clone: 24 IDV, Unknown 52   T43S, N61D Y14H, D17G, D40S, K65R 
  clone: 82 IDV, Unknown 52 I82F I89V V10I, T43S D17G, D40S, K65R 
  clone: 83 IDV, Unknown 52 I82F I89V V10I, T43S D17G, D40S, K65R 
  clone: 84 IDV, Unknown 52 I82F I89V V10I, T43S K7N, D17G, D40S, K65R 
H2A020 PBR9040
Consensus 
IDV 55 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 4204 IDV 55 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 4205 IDV 55 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 4235 IDV 55 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 4236 IDV 55 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 4238 IDV 55 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  PBR9041
Consensus 
IDV 64 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 4139 IDV 64 I54M I89V T43S, F85L K7N, D17G, D40N, N41D 
  clone: 4244 IDV 64 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 85 IDV 64 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 86 IDV 64 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 87 IDV 64 I54M I89V S31P, T43S, V71I, F85L K7N, D17G, D40N, N41D 
  PBR9042
Consensus 
IDV 73 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 4197 IDV 73 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
  clone: 64 IDV 73 I54M I89V T43S, V71I, F85L K7N, D17G, D40N, N41D 
H2A021 PBR9043
Consensus 
IDV 51   T43S D40N, N41D, R70K 
  clone: 4172 IDV 51   T43S D40N, N41D, R70K 
  clone: 4179 IDV 51   T43S D40N, N41D, R70K 
  clone: 4196 IDV 51   T43S D40N, N41D, R70K 
  PBR9044
Consensus 
IDV 56   T43S, R72RK D40N, N41ND, R70K 
  clone: 4155 IDV 56   T43S D40N, N41D, R70K 
  clone: 4156 IDV 56   T43S, R72K D40N, R70K 
  PBR9045 IDV 87   P1L, T43S D17G, D40S, N41D, R70K 
H2A022 PBR9046 IDV 49   T43S D40S, R70K 
H2A024 PBR9047
Consensus 
None    T43S, T91A Y14L, D17G, D40SN 
  clone: 4173 None    V20I, T43S, T91A Y14L, D17G, D25G, D40N 
  clone: 4174 None    T43S, T91A Y14H, D17G, D40N 
  clone: 4175 None    T43S, T91A Y14L, D17G, D40S 
  clone: 4176 None    E21D, T43S, T91A Y14L, D17G, D40S 
  clone: 4177 None    N41S, T43S, T91A Y14H, D17G, D40S, V62I 
  clone: 4178 None    V20I, T43S, T91A Y14L, D40N 
  PBR9048 None    V20I, T43S, T91A Y14L, D17G, D40N 
  PBR9049
Consensus 
None    V20I, T43S, T91A Y14L, D17G, D25DG, D40SN, R70RK 
  clone: 4137 None    V20I, T43S, T91A Y14L, D17G, D40N 
  clone: 4245 None    V20I, T43S, T91A Y14L, D17G, D25G, D40S, R70K 
  PBR9050 IDV 18   T43S, T91A, A92T Y14L, D17G, D40S 
H2A025 PBR9051 Unknown    T43S D17G, D40S, K60R, K65E, R70K 
  PBR9052
Consensus 
Unknown   I89V T43S D17DG, D40S, K60R, E63EK, K65E, R70K 
  clone: 90 Unknown   I89V T43S D40S, K60R, E63K, K65E, R70K 
  clone: 99 Unknown   I89V T43S D17G, D40S, K60R, K65E, R70K 
  PBR9053
Consensus 
Unknown, IDV 24   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4267 Unknown, IDV 24   T43S D17G, D40S, K60R, K65E, R70K 
  clone: 4268 Unknown, IDV 24   T43S D17G, D40S, K60R, K65E, R70K 
H2A026 PBR9054
Consensus 
IDV 67  I89V T43S Y14H, D17G, D40C, K65E, N68G 
  clone: 67 IDV 67  I89V T43S Y14H, D17G, A28T, D40C, K65E, N68G 
  clone: 69 IDV 67  I89V T43S, T74A Y14H, D17G, D40C, I46M, K65E, N68G 
  clone: 70 IDV 67  I89V E21D, T43S Y14H, D17G, D40C, K65E, N68G 
  clone: 95 IDV 67  I89V T43S Y14H, D17G, D40C, K65E, N68G 
  PBR9055 IDV 80  I89V T43S Y14H, D17G, D40C, K65E, N68G 
H2A030 PBR9056
Consensus 
IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K 
  clone: 4188 IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K 
  clone: 4248 IDV, Unknown 52   P19E, T43S D17G, D40N, N41D, R70K 
  clone: 43 IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, G52E, R70K 
  clone: 91 IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K 
  clone: 92 IDV, Unknown 52   T43S D17G, P19A, A28T, D40S, N41D, R70K 
  clone: 93 IDV, Unknown 52   P19E, T43S D17G, D40S, R70K 
  PBR9057 IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K 
  PBR9058
Consensus 
IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K 
  clone: 45 IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K 
  clone: 46 IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K 
  clone: 47 IDV, Unknown 52   T43S D17G, P19A, D40S, N41D, R70K, G94D 
H2A031 PBR9059 Unknown    T43S, R70T  
  PBR9060 Unknown, IDV   T43S R70K 
H2A033 PBR9061 IDV, Unknown 71   T43S Y14H, D17G, D40S, N41D 
H2A034 PBR9062
Consensus 
IDV 83   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  clone: 4200 IDV 83   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  clone: 4243 IDV 83   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  clone: 66 IDV 83   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  PBR9063 IDV 88   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
  PBR9064 IDV 101   T43S, V71I, R72K Y14H, D17G, D40S, E63K, K65E, T77V 
H2A037 PBR9065 None    E37D, T43S, T91A Y14H, D17G, D40S, N41D 
  PBR9066 None    E37D, T43S, T91A Y14H, D17G, D40S