Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Heipertz (2016)
Title Significant contribution of subtype G to HIV-1 genetic complexity in Nigeria identified by a newly developed subtyping assay specific for subtype G and CRF02_AG.
Citation Medicine (Baltimore)
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 42
NumPts 42
Subtype G, CRF02_AG, A, CRF06_cpx, C

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
NG010060 NG010060 None    K14R, V31I, I72V, L101I, T112V, T124A, T125A, G134S, K136T, D167E, G193E, V201I, T206S, T218I, L234I, A265V, R269K, D278G, S283G  
NG010067 NG010067 None    K14R, V31I, L101I, T112V, T124N, T125A, G134S, K136T, G163S, D167E, K188KR, V201I, T206S, L234I, S255N, D256E, I257IL, I267IV, I268IL, R269RK, S283G, D286E  
NG010073 NG010073 None    K14R, V31I, S39C, M50I, L63I, L74I, T112V, T124A, T125A, G134S, K136Q, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
NG010079 NG010079 None    E10G, V31I, S39N, L74I, T112V, T124N, T125A, G134N, K136Q, D167E, V201I, T206S, I208L, T218S, Y227F, L234I, S255N, D256E, S283G  
NG010105 NG010105 None    K7R, K14R, V31I, L101I, T112V, S119PT, T124N, G134N, K136T, L172LF, V201I, T206S, I208L, E212I, T218TS, D229E, S255N, D256E, M275V, S283G  
NG010129 NG010129 None    K14R, S17N, V31I, G106A, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, D207E, L234I, D256E, S283G  
NG010131 NG010131 None   L74M K14R, V31I, K111T, T112V, T124A, T125A, K136Q, D167E, T206S, I208L, L234I, D278G, R284G, D288N  
NG010145 NG010145 None    K14R, D25E, V31I, S39C, M50I, L63I, L74I, T112V, T124A, T125A, G134S, K136Q, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
NG010157 NG010157 None    S17N, V31I, I84M, Y99H, L101I, T112I, T124N, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
NG010170 NG010170 None    K14R, S17SG, S24SN, V31VI, L45I, S57SG, I72V, L74I, L101I, K111R, T112V, S119SG, T124A, T125A, G134N, I135V, K136T, K156N, E157Q, K173R, G197GR, V201I, T206S, T218I, K219N, N222K, L234I, M275V, S283G  
NG010181 NG010181 None    K7R, E11D, S17C, V31I, M50MI, I72V, I84M, L101I, T112V, T124A, T125A, G134N, I135V, K136T, I141V, V201I, T206S, T218I, L234I, S283G  
NG010205 NG010205 None    K14R, S17N, L101I, K103KR, K111Q, T112V, T124N, G134N, K136T, V201I, T206S, K211R, E212AT, L234I, Q252K, S255N, D256E, S283G  
NG010208 NG010208 None    K14R, V31I, M50I, L101I, T112V, T124N, G134D, K136T, V201I, T206S, L234I, D256E, R269K, V281M, S283G, D286N  
NG010261 NG010261 None    K14R, S17N, M50I, L101I, T112I, T124N, T125V, G134N, K136T, V201I, T206S, I208L, Y227F, L234I, D256E, S283G  
NG010315 NG010315 None    E10ED, E11ED, K14R, L74I, Q95S, T112V, T124S, T125A, G134N, K136T, V201I, T206S, I208L, L234I, S255N, D256E, S283G  
NG010325 NG010325 None   L74M, T97A K14R, V31I, M50V, S57G, I60V, L101I, T112I, S119R, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, R269K, D278G, S283G H12HR 
NG010483 NG010483 None    R20K, V31I, M50I, I72V, T112I, T124N, K136T, V165I, G193E, V201I, T206S, I217V, T218S, Y227F, L234V, S255N, D256E, D279G, S283G  
NG010499 NG010499 None    V31I, L101I, G106A, T112V, T124A, T125A, G134D, D167E, V201I, T206S, D207E, I208L, L234I, S283G  
NG020065 NG020065 None    R20K, V31I, L101I, T112V, T124A, T125A, G134D, I135V, K136T, V201I, T206S, L234I, S283G  
NG020133 NG020133 None    S17N, N27G, V31I, I72V, L101I, T112V, S119P, T124N, G134N, K136T, D167E, V201I, T206S, I208L, K211R, L234I, S255N, D256E, S283G  
NG020134 NG020134 None    E11D, E13D, R20K, M50I, K71R, L101I, K111T, T112V, T124A, T125A, G134N, K136T, V201I, T206S, L234I, S255N, D256E, R269K, D278G, S283G  
NG020303 NG020303 None    K14R, S17N, V31I, M50I, Q53K, I72V, L101I, T112V, T124N, G134N, K136T, V165I, V201I, T206S, D229E, S255N, D256E, S283G, R284G  
NG020307 NG020307 None    E11D, E13ED, K14KR, S17SI, S24SN, V31I, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136I, V201I, T206S, L234I, R269K, S283G  
NG020382 NG020382 None    E11D, D25E, V31I, I72V, L74I, T112V, T124A, T125A, V126M, G134D, I135V, K136H, F181L, V201I, T206S, L234I, S283G H16HR 
NG020420 NG020420 None    K14R, R20K, V31I, M50T, L101I, T112V, T124N, G134N, K136T, A196AV, V201I, T206S, L234I, S255SN, D256E, S283G  
NG020437 NG020437 None    E11D, K14R, S24N, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, A265V, S283G A38AV 
NG020468 NG020468 None    K14R, V31I, S57G, L101I, T112V, T124S, T125A, G134N, I135V, K136T, V201I, T206S, K211N, T218N, L234I, S283G E212K 
NG020523 NG020523 None    D6E, E11D, S17N, D25E, V31I, M50I, L74I, A91T, F100Y, L101I, T112V, T124A, T125A, K136Q, G163E, D167E, V201I, L234I, D278A, S283G  
NG020545 NG020545 None    E11D, K14R, S17T, V31I, V32I, S39C, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, Q221T, L234I, I268L, S283G  
NG030161 NG030161 None    K14R, D25E, V31I, L74I, T112V, T124A, T125A, G134N, I135V, K136T, K173R, K188R, V201I, T206S, Q216N, L234I, D256E, A265V, S283G, D288N  
NG030498 NG030498 None    K14R, S24N, A91S, L101I, T112V, S119R, T125A, G134N, K136T, D167E, V201I, T206S, I208M, T218S, L234I, D256E, V281M, S283G  
NG040248 NG040248 None    K14R, A21T, Q95P, L101I, T112V, T124A, T125A, G134N, K136T, D167E, V201I, L234I, S283G  
NG050135 NG050135 None    K14R, S17T, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, D167E, K173R, V201I, T206S, T218I, K219Q, L234I, D256E, R269K, D278A, S283G  
NG050158 NG050158 None   E138D E11D, K14R, S24N, V31I, A91T, L101I, T112V, T124N, T125A, G134N, K136T, G163A, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
NG050272 NG050272 None    K14R, R20K, L101I, K111R, T124N, G134N, K136T, V201I, T206S, L234I, S255N, D256E, R269K, S283G, D286DG  
NG050356 NG050356 None    K14R, S24N, V31I, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, G163E, Q177L, V201I, T206S, L234I, D253E, S283G, D286N  
NG050366 NG050366 None    K7R, E11D, K14R, V31I, L101I, T112V, T124A, T125P, G134N, I135V, K136T, V201I, T206S, I208L, L234I, R269K, S283G  
NG050489 NG050489 None    K14R, K42R, S57G, T112M, T124G, T125A, G134D, Q137H, V201I, T206S, D207E, L234I, S255N, D256E, S283G  
NG060248 NG060248 None    V31I, L101I, T112V, T124N, T125A, G134N, K136T, V201I, T206S, K219Q, L234I, S255N, D256E, S283G  
NG060304 NG060304 None    E11D, K14R, Y15F, D25E, V31I, I72V, T112V, S119P, T124A, T125A, G134N, I135V, K136T, K173R, V201I, T206S, L234I, S283G  
NG060409 NG060409 None    K14R, R20K, M50I, L101I, T112V, T124N, T125A, G134S, K136T, V201I, T206S, I208M, I217V, T218S, L234I, S255N, D256E, I268L, S283G  
NG060418 NG060418 None    K14R, S24N, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, E157H, K160Q, V201I, T206S, L234I, S283G